Wall clock time and date at job start Sat Apr 11 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47464 * 2 1 4 4 C 1.53004 * 109.47092 * 240.00501 * 2 1 3 5 5 N 1.46500 * 109.46993 * 64.99565 * 4 2 1 6 6 C 1.36943 * 119.99707 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99970 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99489 * 180.02562 * 6 5 4 9 9 N 1.31615 * 119.99728 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00414 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47116 * 89.99729 * 10 8 6 12 12 H 1.48496 * 109.47285 * 209.99962 * 10 8 6 13 13 H 1.48504 * 109.46943 * 330.00116 * 10 8 6 14 14 C 1.53005 * 109.47239 * 120.00733 * 2 1 3 15 15 N 1.46499 * 109.46836 * 294.99614 * 14 2 1 16 16 C 1.34771 * 120.00120 * 179.97438 * 15 14 2 17 17 O 1.21633 * 119.99829 * 0.02562 * 16 15 14 18 18 C 1.47269 * 120.00496 * 179.97438 * 16 15 14 19 19 C 1.35197 * 123.14450 * 179.97438 * 18 16 15 20 20 S 1.70942 * 108.83137 * 180.02562 * 19 18 16 21 21 C 1.70774 * 91.12263 * 0.02562 * 20 19 18 22 22 C 1.50700 * 124.71705 * 179.97438 * 21 20 19 23 23 H 1.09003 * 110.55428 * 197.90208 * 22 21 20 24 24 C 1.54994 * 110.62228 * 75.02065 * 22 21 20 25 25 C 1.54807 * 102.09860 * 204.47433 * 24 22 21 26 26 C 1.54105 * 104.18504 * 20.88235 * 25 24 22 27 27 O 1.43746 * 107.42259 * 1.95340 * 26 25 24 28 28 N 1.28639 * 110.56356 * 0.24374 * 21 20 19 29 29 H 1.08994 * 109.47348 * 59.99486 * 1 2 3 30 30 H 1.09005 * 109.46897 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46875 * 299.99731 * 1 2 3 32 32 H 1.08992 * 109.47255 * 185.00350 * 4 2 1 33 33 H 1.09002 * 109.46891 * 305.00226 * 4 2 1 34 34 H 0.97002 * 120.00059 * 0.02562 * 5 4 2 35 35 H 0.97002 * 120.00171 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.46761 * 175.00181 * 14 2 1 37 37 H 1.08998 * 109.47131 * 54.99696 * 14 2 1 38 38 H 0.97003 * 119.99777 * 0.02562 * 15 14 2 39 39 H 1.08007 * 125.58523 * 0.02562 * 19 18 16 40 40 H 1.09007 * 110.90973 * 86.27291 * 24 22 21 41 41 H 1.08999 * 110.90910 * 322.67689 * 24 22 21 42 42 H 1.08996 * 110.48875 * 262.20504 * 25 24 22 43 43 H 1.09000 * 110.48902 * 139.55378 * 25 24 22 44 44 H 1.09002 * 109.88076 * 121.45430 * 26 25 24 45 45 H 1.08996 * 109.87584 * 242.45546 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6523 0.0355 -2.4424 6 6 2.0019 -0.4200 -3.6856 7 1 2.5629 -1.3373 -3.7866 8 6 1.6350 0.2972 -4.8160 9 7 1.9705 -0.1408 -6.0109 10 14 0.6652 1.8842 -4.6413 11 1 1.6048 3.0282 -4.5243 12 1 -0.1967 2.0717 -5.8360 13 1 -0.1835 1.8142 -3.4247 14 6 2.0401 -0.7214 1.2492 15 7 1.6526 0.0351 2.4424 16 6 1.9957 -0.4139 3.6659 17 8 2.6275 -1.4470 3.7794 18 6 1.6066 0.3468 4.8654 19 6 1.9164 -0.0448 6.1217 20 16 1.2897 1.0992 7.2266 21 6 0.6500 2.0335 5.9482 22 6 -0.1171 3.3186 6.1246 23 1 -0.6801 3.5553 5.2217 24 6 0.8412 4.4805 6.4905 25 6 -0.1041 5.4613 7.2260 26 6 -1.2876 4.5814 7.6732 27 8 -0.9989 3.2330 7.2672 28 7 0.9092 1.4847 4.8139 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1262 -0.7994 -1.2057 33 1 1.6053 -1.7197 -1.2953 34 1 1.1487 0.8596 -2.3517 35 1 1.7144 0.3606 -6.8009 36 1 3.1264 -0.7996 1.2054 37 1 1.6054 -1.7199 1.2950 38 1 1.1484 0.8589 2.3518 39 1 2.4693 -0.9346 6.3844 40 1 1.2564 4.9396 5.5933 41 1 1.6356 4.1358 7.1525 42 1 -0.4451 6.2434 6.5478 43 1 0.3959 5.8966 8.0913 44 1 -1.3948 4.6272 8.7570 45 1 -2.2053 4.9239 7.1953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714390706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:24 Heat of formation + Delta-G solvation = -29.603005 kcal Electronic energy + Delta-G solvation = -26128.545620 eV Core-core repulsion = 22273.105023 eV Total energy + Delta-G solvation = -3855.440597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.88658 -39.95810 -38.81727 -36.93693 -34.50062 -32.87461 -32.50906 -32.05784 -30.52138 -29.23170 -27.18250 -26.16883 -25.13186 -23.65161 -22.23216 -21.92312 -21.37450 -20.43158 -19.94992 -18.99914 -17.54606 -17.10894 -16.85882 -16.66835 -15.92239 -15.86899 -15.53126 -15.01259 -14.90864 -14.47404 -14.21314 -14.09003 -13.91204 -13.65297 -13.43381 -13.15573 -12.62163 -12.46601 -12.42437 -12.31538 -12.24056 -12.18560 -12.03001 -11.42687 -11.40798 -11.02832 -10.74636 -10.63228 -10.59631 -10.50336 -10.27352 -10.21164 -10.06168 -10.04594 -9.56944 -9.37598 -9.03257 -8.88758 -7.21779 -5.75414 -3.10876 0.09484 0.79239 1.23585 1.57254 2.83942 3.13574 3.19735 3.37194 3.39701 3.45340 3.71473 3.89892 4.22722 4.28739 4.47534 4.59802 4.60927 4.65234 4.80983 4.88262 4.93502 5.07864 5.12096 5.13834 5.22239 5.28341 5.31542 5.42474 5.43684 5.55286 5.69468 5.76803 5.89045 5.90773 6.13625 6.14064 6.26193 6.38764 6.49330 6.67780 6.77337 6.94233 7.45520 8.01129 8.06036 8.43549 9.22536 9.94714 10.14622 11.43052 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.002191 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.082662 B =12777.809614 C =14382.372780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 H 0.076 0.924 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.243 4.243 7 H 0.091 0.909 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.126 3.874 15 N -0.706 5.706 16 C 0.592 3.408 17 O -0.535 6.535 18 C 0.012 3.988 19 C -0.230 4.230 20 S 0.251 5.749 21 C 0.021 3.979 22 C 0.154 3.846 23 H 0.106 0.894 24 C -0.145 4.145 25 C -0.155 4.155 26 C 0.047 3.953 27 O -0.369 6.369 28 N -0.433 5.433 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.030 0.970 33 H 0.031 0.969 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.409 0.591 39 H 0.192 0.808 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.776 10.848 35.083 37.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.193 4.193 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.002 3.998 15 N -0.357 5.357 16 C 0.374 3.626 17 O -0.413 6.413 18 C -0.123 4.123 19 C -0.372 4.372 20 S 0.508 5.492 21 C -0.259 4.259 22 C 0.093 3.907 23 H 0.124 0.876 24 C -0.184 4.184 25 C -0.193 4.193 26 C -0.030 4.030 27 O -0.288 6.288 28 N -0.150 5.150 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.245 0.755 39 H 0.209 0.791 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.505 10.106 35.625 37.304 hybrid contribution -0.647 1.209 -1.056 1.731 sum -5.152 11.315 34.569 36.737 Atomic orbital electron populations 1.21823 0.94704 1.02284 1.01361 1.21605 0.96728 1.00588 0.94432 0.90518 1.20553 0.97214 0.94237 0.84265 1.42689 1.67672 1.27310 1.02347 1.19070 1.29281 1.07152 0.81753 0.89164 1.24679 1.00828 0.98674 0.95111 1.69702 1.51395 1.40232 0.96918 0.86541 0.80247 0.84839 0.76841 1.21113 1.21745 1.20345 1.21477 1.00467 0.95346 0.82501 1.45883 1.56550 1.27958 1.05287 1.17008 0.79496 0.84008 0.82052 1.90830 1.40435 1.23637 1.86363 1.20407 1.03143 0.94122 0.94642 1.26784 1.06761 1.07089 0.96568 1.82939 1.43782 1.12193 1.10245 1.26537 1.04806 1.02272 0.92238 1.21395 0.89650 0.87815 0.91811 0.87630 1.23211 0.98221 0.95021 1.01938 1.22957 0.96231 0.98711 1.01396 1.23215 0.97552 0.81311 1.00916 1.88960 1.66680 1.26554 1.46616 1.66783 1.12934 1.07887 1.27397 0.91756 0.92379 0.93521 0.95179 0.95102 0.80620 0.93079 0.90852 0.90869 0.75498 0.79057 0.88877 0.90012 0.89955 0.89832 0.89214 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.94 37.16 0.33 -1.76 16 2 C -0.11 -1.72 2.46 -90.61 -0.22 -1.94 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.17 3.18 5.65 -4.04 -0.02 3.16 16 5 N -0.75 -17.96 5.13 -59.91 -0.31 -18.27 16 6 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 7 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 8 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 9 N -0.93 -29.65 13.97 55.49 0.78 -28.87 16 10 Si 0.88 22.20 27.74 -169.99 -4.71 17.48 16 11 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 14 C 0.13 1.74 5.06 -4.04 -0.02 1.72 16 15 N -0.71 -9.16 5.28 -61.43 -0.32 -9.49 16 16 C 0.59 8.33 7.80 -12.59 -0.10 8.23 16 17 O -0.54 -8.97 16.71 5.25 0.09 -8.88 16 18 C 0.01 0.15 6.70 -84.53 -0.57 -0.42 16 19 C -0.23 -2.23 10.62 29.65 0.31 -1.91 16 20 S 0.25 1.86 22.68 -107.50 -2.44 -0.58 16 21 C 0.02 0.19 6.41 -13.62 -0.09 0.10 16 22 C 0.15 1.09 3.87 -26.83 -0.10 0.99 16 23 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 24 C -0.14 -0.70 6.58 -24.73 -0.16 -0.87 16 25 C -0.16 -0.51 7.01 -25.20 -0.18 -0.69 16 26 C 0.05 0.20 7.69 37.73 0.29 0.49 16 27 O -0.37 -2.75 11.02 -35.23 -0.39 -3.14 16 28 N -0.43 -4.79 10.12 -8.51 -0.09 -4.88 16 29 H 0.06 1.05 7.18 -51.93 -0.37 0.67 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.57 7.18 -51.93 -0.37 0.20 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.36 8.32 4.71 -40.82 -0.19 8.13 16 35 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.41 4.83 7.17 -40.82 -0.29 4.53 16 39 H 0.19 1.63 8.03 -52.48 -0.42 1.21 16 40 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.38 8.05 -51.93 -0.42 -0.03 16 42 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 44 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -34.72 384.55 -9.11 -43.83 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.73 Total: 7.02 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -0.78 Total: -0.02 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 0.06 Total: -61.51 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.30 Total: -12.02 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.48 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.44 Total: -0.58 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.72 -9.11 -43.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714390706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.231 kcal (2) G-P(sol) polarization free energy of solvation -34.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds