Wall clock time and date at job start Sat Apr 11 2020 05:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.52995 * 109.47106 * 239.99326 * 2 1 3 5 5 N 1.46497 * 109.47154 * 65.00244 * 4 2 1 6 6 C 1.36936 * 120.00244 * 179.97438 * 5 4 2 7 7 H 1.08007 * 119.99969 * 0.02562 * 6 5 4 8 8 C 1.38807 * 120.00198 * 179.97438 * 6 5 4 9 9 N 1.31620 * 119.99891 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00034 * 179.97438 * 8 6 5 11 11 H 1.48510 * 109.46947 * 90.00658 * 10 8 6 12 12 H 1.48499 * 109.47264 * 210.00036 * 10 8 6 13 13 H 1.48495 * 109.47341 * 330.00799 * 10 8 6 14 14 C 1.53005 * 109.46539 * 119.99535 * 2 1 3 15 15 N 1.46496 * 109.47401 * 294.99496 * 14 2 1 16 16 C 1.34777 * 120.00344 * 179.97438 * 15 14 2 17 17 O 1.21638 * 119.99530 * 359.73133 * 16 15 14 18 18 C 1.47266 * 120.00328 * 180.02562 * 16 15 14 19 19 C 1.35208 * 123.14244 * 179.75170 * 18 16 15 20 20 S 1.70939 * 108.82748 * 180.02562 * 19 18 16 21 21 C 1.70777 * 91.12753 * 359.97438 * 20 19 18 22 22 C 1.50704 * 124.71733 * 180.02562 * 21 20 19 23 23 H 1.09002 * 109.86752 * 164.27819 * 22 21 20 24 24 C 1.54104 * 109.87701 * 285.27983 * 22 21 20 25 25 C 1.54808 * 104.18505 * 121.45520 * 24 22 21 26 26 C 1.55001 * 102.09446 * 20.87994 * 25 24 22 27 27 O 1.43740 * 109.87983 * 43.27024 * 22 21 20 28 28 N 1.28646 * 110.55841 * 359.73000 * 21 20 19 29 29 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 30 30 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 31 31 H 1.08996 * 109.47533 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47396 * 185.00608 * 4 2 1 33 33 H 1.09006 * 109.47365 * 305.00280 * 4 2 1 34 34 H 0.97004 * 120.00013 * 0.02562 * 5 4 2 35 35 H 0.97001 * 119.99970 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.46761 * 174.99596 * 14 2 1 37 37 H 1.08993 * 109.47232 * 54.99955 * 14 2 1 38 38 H 0.97004 * 120.00009 * 0.02562 * 15 14 2 39 39 H 1.07994 * 125.58383 * 0.03537 * 19 18 16 40 40 H 1.08995 * 110.48754 * 240.13207 * 24 22 21 41 41 H 1.08999 * 110.48841 * 2.78140 * 24 22 21 42 42 H 1.09006 * 110.90518 * 139.07779 * 25 24 22 43 43 H 1.08997 * 110.90915 * 262.64623 * 25 24 22 44 44 H 1.09004 * 110.61644 * 81.47709 * 26 25 24 45 45 H 1.08997 * 110.61711 * 204.47288 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 1.6525 0.0351 -2.4423 6 6 2.0020 -0.4206 -3.6854 7 1 2.5630 -1.3380 -3.7862 8 6 1.6344 0.2959 -4.8160 9 7 0.9502 1.4136 -4.6932 10 14 2.1118 -0.3254 -6.5117 11 1 1.0426 -1.2152 -7.0320 12 1 2.2863 0.8280 -7.4305 13 1 3.3856 -1.0831 -6.4208 14 6 2.0399 -0.7212 1.2494 15 7 1.6524 0.0355 2.4424 16 6 1.9954 -0.4133 3.6661 17 8 2.6225 -1.4494 3.7801 18 6 1.6054 0.3471 4.8654 19 6 1.9112 -0.0467 6.1222 20 16 1.2847 1.0977 7.2267 21 6 0.6516 2.0356 5.9477 22 6 -0.1112 3.3234 6.1237 23 1 -0.1598 3.8578 5.1749 24 6 -1.5356 3.0237 6.6297 25 6 -1.6332 3.7959 7.9679 26 6 -0.5111 4.8542 7.8147 27 8 0.5337 4.1422 7.1135 28 7 0.9217 1.4932 4.8129 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1263 -0.7997 -1.2054 33 1 1.6053 -1.7200 -1.2950 34 1 1.1489 0.8593 -2.3518 35 1 0.6936 1.9145 -5.4832 36 1 3.1263 -0.7995 1.2057 37 1 1.6052 -1.7197 1.2954 38 1 1.1483 0.8593 2.3518 39 1 2.4614 -0.9381 6.3851 40 1 -2.2776 3.3924 5.9215 41 1 -1.6642 1.9542 6.7962 42 1 -2.6074 4.2740 8.0709 43 1 -1.4342 3.1368 8.8128 44 1 -0.8599 5.7005 7.2228 45 1 -0.1607 5.1863 8.7919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714390708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:26 Heat of formation + Delta-G solvation = -33.706532 kcal Electronic energy + Delta-G solvation = -26074.323195 eV Core-core repulsion = 22218.704656 eV Total energy + Delta-G solvation = -3855.618540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.84187 -39.92400 -38.72970 -36.77351 -34.35226 -32.85732 -32.46478 -31.96121 -30.03104 -29.15792 -27.06831 -25.88973 -24.95695 -23.61307 -22.56791 -22.11941 -21.22457 -20.30317 -19.78892 -18.88705 -17.19449 -17.08591 -16.73172 -16.56987 -15.83423 -15.71899 -15.62607 -14.93314 -14.64345 -14.37649 -14.24408 -14.00257 -13.82366 -13.53391 -13.48926 -13.01050 -12.60135 -12.37582 -12.33960 -12.28326 -12.14188 -11.99880 -11.85566 -11.39441 -11.03223 -10.88818 -10.68146 -10.58637 -10.55123 -10.39981 -10.20341 -10.15152 -10.00504 -9.95663 -9.65091 -9.31100 -8.95172 -8.85065 -6.89422 -5.74440 -3.02700 0.15717 0.85311 1.29278 1.64853 2.95379 3.20329 3.28577 3.45703 3.50846 3.52626 3.72097 3.92990 4.27735 4.30297 4.46926 4.61636 4.67050 4.79572 4.87528 4.97987 5.09707 5.11573 5.19138 5.22795 5.25926 5.35433 5.44269 5.44810 5.50295 5.60332 5.85689 6.00356 6.01803 6.14664 6.18964 6.29670 6.42834 6.49320 6.69245 6.81255 6.90455 7.01926 7.53898 7.72889 8.13279 8.44743 9.55896 10.13613 10.48501 11.48608 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017682 B = 0.001958 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.125375 B =14296.158731 C =15514.897842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.016 4.016 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.125 3.875 15 N -0.704 5.704 16 C 0.591 3.409 17 O -0.538 6.538 18 C 0.013 3.987 19 C -0.230 4.230 20 S 0.242 5.758 21 C 0.019 3.981 22 C 0.154 3.846 23 H 0.105 0.895 24 C -0.147 4.147 25 C -0.156 4.156 26 C 0.045 3.955 27 O -0.367 6.367 28 N -0.433 5.433 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.021 0.979 33 H 0.023 0.977 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.410 0.590 39 H 0.191 0.809 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.897 5.312 32.704 33.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.002 3.998 15 N -0.355 5.355 16 C 0.374 3.626 17 O -0.415 6.415 18 C -0.122 4.122 19 C -0.372 4.372 20 S 0.500 5.500 21 C -0.260 4.260 22 C 0.093 3.907 23 H 0.123 0.877 24 C -0.186 4.186 25 C -0.194 4.194 26 C -0.031 4.031 27 O -0.285 6.285 28 N -0.150 5.150 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.246 0.754 39 H 0.209 0.791 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.306 4.846 33.223 33.992 hybrid contribution -0.072 -0.172 -1.938 1.947 sum -5.378 4.674 31.285 32.086 Atomic orbital electron populations 1.21791 0.94619 1.01902 1.01587 1.21551 0.96799 1.00573 0.94027 0.90440 1.20573 0.96619 0.94193 0.85352 1.42341 1.66937 1.27678 1.00571 1.19243 1.28571 1.05400 0.83662 0.91147 1.24741 1.01100 0.97437 0.97860 1.69660 1.43634 1.16602 1.28443 0.86173 0.78016 0.77489 0.84424 1.21755 1.21805 1.20763 1.21499 1.00311 0.95289 0.82726 1.45896 1.56385 1.27958 1.05261 1.17021 0.79494 0.84022 0.82093 1.90822 1.40785 1.23514 1.86403 1.20430 1.03087 0.94105 0.94623 1.26748 1.07079 1.06806 0.96593 1.82868 1.45034 1.11553 1.10574 1.26884 1.04861 1.02275 0.92022 1.21053 0.89339 0.85704 0.94588 0.87716 1.23053 0.95436 1.02428 0.97729 1.23184 1.00282 0.98232 0.97715 1.23695 0.87294 0.94641 0.97519 1.88991 1.30529 1.58709 1.50286 1.66807 1.12692 1.08151 1.27328 0.93801 0.91121 0.92848 0.96094 0.95961 0.78185 0.93554 0.91082 0.91074 0.75413 0.79143 0.89049 0.89951 0.89426 0.90111 0.91313 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.94 37.16 0.33 -1.89 16 2 C -0.11 -1.80 2.46 -90.62 -0.22 -2.02 16 3 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 4 C 0.16 3.28 5.65 -4.05 -0.02 3.26 16 5 N -0.73 -18.67 5.33 -59.91 -0.32 -18.99 16 6 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 7 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 8 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 9 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 10 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.13 1.86 5.06 -4.04 -0.02 1.84 16 15 N -0.70 -9.79 5.28 -61.43 -0.32 -10.11 16 16 C 0.59 8.75 7.80 -12.59 -0.10 8.65 16 17 O -0.54 -9.35 16.71 5.24 0.09 -9.26 16 18 C 0.01 0.16 6.70 -84.53 -0.57 -0.40 16 19 C -0.23 -2.35 10.62 29.65 0.31 -2.04 16 20 S 0.24 1.89 22.72 -107.50 -2.44 -0.55 16 21 C 0.02 0.18 6.10 -13.61 -0.08 0.10 16 22 C 0.15 1.16 3.94 -27.30 -0.11 1.06 16 23 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 24 C -0.15 -0.74 6.63 -25.20 -0.17 -0.91 16 25 C -0.16 -0.54 7.16 -24.72 -0.18 -0.71 16 26 C 0.04 0.20 7.72 38.21 0.30 0.49 16 27 O -0.37 -2.87 11.01 -35.23 -0.39 -3.26 16 28 N -0.43 -5.10 10.12 -8.51 -0.09 -5.18 16 29 H 0.04 0.59 7.18 -51.93 -0.37 0.21 16 30 H 0.07 1.27 7.18 -51.93 -0.37 0.90 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.38 10.21 6.85 -40.82 -0.28 9.93 16 35 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.41 5.26 7.17 -40.82 -0.29 4.97 16 39 H 0.19 1.73 8.03 -52.49 -0.42 1.30 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.44 7.69 -51.93 -0.40 0.04 16 42 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 387.33 15.07 5.84 5.84 Total: -1.00 -34.07 387.33 -9.46 -43.53 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.76 Total: 8.07 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -0.77 Total: -0.04 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -0.01 Total: -62.03 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.30 Total: -12.52 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.44 Total: -0.55 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.07 -9.46 -43.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714390708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.825 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds