Wall clock time and date at job start Sat Apr 11 2020 05:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.52995 * 109.47106 * 239.99326 * 2 1 3 5 5 N 1.46497 * 109.47154 * 65.00244 * 4 2 1 6 6 C 1.36936 * 120.00244 * 179.97438 * 5 4 2 7 7 H 1.08007 * 119.99969 * 0.02562 * 6 5 4 8 8 C 1.38807 * 120.00198 * 179.97438 * 6 5 4 9 9 N 1.31620 * 119.99891 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00034 * 179.97438 * 8 6 5 11 11 H 1.48510 * 109.46947 * 90.00658 * 10 8 6 12 12 H 1.48499 * 109.47264 * 210.00036 * 10 8 6 13 13 H 1.48495 * 109.47341 * 330.00799 * 10 8 6 14 14 C 1.53005 * 109.46539 * 119.99535 * 2 1 3 15 15 N 1.46496 * 109.47401 * 294.99496 * 14 2 1 16 16 C 1.34777 * 120.00344 * 179.97438 * 15 14 2 17 17 O 1.21638 * 119.99530 * 359.73133 * 16 15 14 18 18 C 1.47266 * 120.00328 * 180.02562 * 16 15 14 19 19 C 1.35208 * 123.14244 * 179.75170 * 18 16 15 20 20 S 1.70939 * 108.82748 * 180.02562 * 19 18 16 21 21 C 1.70777 * 91.12753 * 359.97438 * 20 19 18 22 22 C 1.50704 * 124.71733 * 180.02562 * 21 20 19 23 23 H 1.09002 * 109.86752 * 164.27819 * 22 21 20 24 24 C 1.54104 * 109.87701 * 285.27983 * 22 21 20 25 25 C 1.54808 * 104.18505 * 121.45520 * 24 22 21 26 26 C 1.55001 * 102.09446 * 20.87994 * 25 24 22 27 27 O 1.43740 * 109.87983 * 43.27024 * 22 21 20 28 28 N 1.28646 * 110.55841 * 359.73000 * 21 20 19 29 29 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 30 30 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 31 31 H 1.08996 * 109.47533 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47396 * 185.00608 * 4 2 1 33 33 H 1.09006 * 109.47365 * 305.00280 * 4 2 1 34 34 H 0.97004 * 120.00013 * 0.02562 * 5 4 2 35 35 H 0.97001 * 119.99970 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.46761 * 174.99596 * 14 2 1 37 37 H 1.08993 * 109.47232 * 54.99955 * 14 2 1 38 38 H 0.97004 * 120.00009 * 0.02562 * 15 14 2 39 39 H 1.07994 * 125.58383 * 0.03537 * 19 18 16 40 40 H 1.08995 * 110.48754 * 240.13207 * 24 22 21 41 41 H 1.08999 * 110.48841 * 2.78140 * 24 22 21 42 42 H 1.09006 * 110.90518 * 139.07779 * 25 24 22 43 43 H 1.08997 * 110.90915 * 262.64623 * 25 24 22 44 44 H 1.09004 * 110.61644 * 81.47709 * 26 25 24 45 45 H 1.08997 * 110.61711 * 204.47288 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 1.6525 0.0351 -2.4423 6 6 2.0020 -0.4206 -3.6854 7 1 2.5630 -1.3380 -3.7862 8 6 1.6344 0.2959 -4.8160 9 7 0.9502 1.4136 -4.6932 10 14 2.1118 -0.3254 -6.5117 11 1 1.0426 -1.2152 -7.0320 12 1 2.2863 0.8280 -7.4305 13 1 3.3856 -1.0831 -6.4208 14 6 2.0399 -0.7212 1.2494 15 7 1.6524 0.0355 2.4424 16 6 1.9954 -0.4133 3.6661 17 8 2.6225 -1.4494 3.7801 18 6 1.6054 0.3471 4.8654 19 6 1.9112 -0.0467 6.1222 20 16 1.2847 1.0977 7.2267 21 6 0.6516 2.0356 5.9477 22 6 -0.1112 3.3234 6.1237 23 1 -0.1598 3.8578 5.1749 24 6 -1.5356 3.0237 6.6297 25 6 -1.6332 3.7959 7.9679 26 6 -0.5111 4.8542 7.8147 27 8 0.5337 4.1422 7.1135 28 7 0.9217 1.4932 4.8129 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1263 -0.7997 -1.2054 33 1 1.6053 -1.7200 -1.2950 34 1 1.1489 0.8593 -2.3518 35 1 0.6936 1.9145 -5.4832 36 1 3.1263 -0.7995 1.2057 37 1 1.6052 -1.7197 1.2954 38 1 1.1483 0.8593 2.3518 39 1 2.4614 -0.9381 6.3851 40 1 -2.2776 3.3924 5.9215 41 1 -1.6642 1.9542 6.7962 42 1 -2.6074 4.2740 8.0709 43 1 -1.4342 3.1368 8.8128 44 1 -0.8599 5.7005 7.2228 45 1 -0.1607 5.1863 8.7919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714390708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:26 Heat of formation + Delta-G solvation = -58.184475 kcal Electronic energy + Delta-G solvation = -26075.384638 eV Core-core repulsion = 22218.704656 eV Total energy + Delta-G solvation = -3856.679983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.71078 -40.57214 -39.65127 -38.23444 -36.02115 -34.14872 -33.33031 -32.58992 -31.89521 -29.76199 -28.21686 -27.46502 -26.09921 -24.71311 -23.76104 -22.86037 -21.94871 -21.51295 -20.85850 -19.87176 -19.09194 -17.81323 -17.60119 -17.22455 -16.97462 -16.76630 -16.45615 -16.22599 -15.96228 -15.52708 -15.44736 -15.10087 -14.85862 -14.60924 -14.56265 -14.13780 -14.07116 -13.65123 -13.60165 -13.04575 -12.97449 -12.80500 -12.77430 -12.64906 -12.22388 -12.18734 -12.16277 -12.02194 -11.78895 -11.72112 -11.68525 -11.34125 -11.09738 -10.94890 -10.81693 -10.71391 -10.29353 -9.90132 -9.00145 -7.95627 -5.24240 -0.61588 0.15411 0.54203 0.74596 1.47203 1.48962 1.57530 2.06858 2.17502 2.47595 2.56766 3.17893 3.37854 3.48672 3.64077 3.68461 3.89821 3.92509 4.00318 4.03503 4.08199 4.16798 4.32389 4.37304 4.45098 4.50911 4.61899 4.66654 4.74418 4.80206 4.85661 4.90907 4.96246 5.00985 5.05092 5.10593 5.17477 5.25008 5.34406 5.43254 5.49480 5.76794 6.16433 6.26923 6.49686 7.01719 7.33433 8.08341 8.32779 9.27940 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017682 B = 0.001958 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.125375 B =14296.158731 C =15514.897842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 H 0.075 0.925 4 C 0.158 3.842 5 N -0.742 5.742 6 C -0.246 4.246 7 H 0.075 0.925 8 C -0.076 4.076 9 N -0.969 5.969 10 Si 0.975 3.025 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.271 1.271 14 C 0.136 3.864 15 N -0.699 5.699 16 C 0.590 3.410 17 O -0.570 6.570 18 C -0.014 4.014 19 C -0.237 4.237 20 S 0.319 5.681 21 C 0.004 3.996 22 C 0.152 3.848 23 H 0.097 0.903 24 C -0.146 4.146 25 C -0.149 4.149 26 C 0.037 3.963 27 O -0.388 6.388 28 N -0.455 5.455 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.021 0.979 33 H 0.025 0.975 34 H 0.376 0.624 35 H 0.252 0.748 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.415 0.585 39 H 0.199 0.801 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.391 5.423 34.702 35.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 H 0.093 0.907 4 C 0.031 3.969 5 N -0.385 5.385 6 C -0.378 4.378 7 H 0.093 0.907 8 C -0.268 4.268 9 N -0.619 5.619 10 Si 0.804 3.196 11 H -0.213 1.213 12 H -0.221 1.221 13 H -0.196 1.196 14 C 0.012 3.988 15 N -0.350 5.350 16 C 0.374 3.626 17 O -0.451 6.451 18 C -0.150 4.150 19 C -0.380 4.380 20 S 0.578 5.422 21 C -0.275 4.275 22 C 0.090 3.910 23 H 0.115 0.885 24 C -0.185 4.185 25 C -0.187 4.187 26 C -0.038 4.038 27 O -0.307 6.307 28 N -0.172 5.172 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.043 0.957 34 H 0.209 0.791 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.253 0.747 39 H 0.216 0.784 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.124 0.876 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.804 4.956 35.260 36.077 hybrid contribution 0.088 -0.174 -2.394 2.402 sum -5.716 4.782 32.867 33.701 Atomic orbital electron populations 1.21707 0.93919 1.02014 1.01517 1.21329 0.97184 0.99966 0.92874 0.90699 1.20711 0.96623 0.94173 0.85383 1.42516 1.66830 1.27799 1.01364 1.19640 1.27844 1.05338 0.84984 0.90728 1.25576 1.01740 0.97913 1.01621 1.69813 1.45109 1.17881 1.29126 0.85121 0.78041 0.76798 0.79678 1.21334 1.22091 1.19557 1.21267 0.99940 0.95132 0.82419 1.45796 1.56284 1.27982 1.04889 1.17336 0.78757 0.83735 0.82741 1.90791 1.42345 1.24973 1.86942 1.20180 1.05305 0.95129 0.94343 1.27029 1.06483 1.07631 0.96813 1.82585 1.42692 1.08955 1.08017 1.27322 1.04688 1.03097 0.92412 1.21131 0.90347 0.84868 0.94618 0.88520 1.23073 0.93954 1.02611 0.98845 1.23191 1.00845 0.97816 0.96813 1.23934 0.87017 0.94862 0.97992 1.88960 1.32157 1.59062 1.50531 1.66773 1.13471 1.08192 1.28726 0.91317 0.93642 0.92633 0.96064 0.95716 0.79139 0.93958 0.91520 0.91010 0.74741 0.78364 0.88197 0.90157 0.87618 0.89547 0.90661 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 8.94 71.98 0.64 -3.52 16 2 C -0.09 -3.06 2.46 -10.79 -0.03 -3.09 16 3 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 4 C 0.16 6.46 5.65 86.38 0.49 6.95 16 5 N -0.74 -38.34 5.33 -343.46 -1.83 -40.17 16 6 C -0.25 -14.05 9.99 84.03 0.84 -13.21 16 7 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 8 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 9 N -0.97 -59.84 13.06 21.65 0.28 -59.56 16 10 Si 0.97 46.87 29.55 68.60 2.03 48.90 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 12 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 13 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 14 C 0.14 4.01 5.06 86.38 0.44 4.44 16 15 N -0.70 -19.24 5.28 -466.51 -2.46 -21.71 16 16 C 0.59 17.47 7.80 86.62 0.68 18.14 16 17 O -0.57 -19.96 16.71 -4.15 -0.07 -20.03 16 18 C -0.01 -0.35 6.70 40.56 0.27 -0.08 16 19 C -0.24 -4.60 10.62 67.12 0.71 -3.88 16 20 S 0.32 4.35 22.72 -56.49 -1.28 3.07 16 21 C 0.00 0.07 6.10 88.58 0.54 0.61 16 22 C 0.15 2.11 3.94 30.22 0.12 2.23 16 23 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 24 C -0.15 -1.20 6.63 31.59 0.21 -0.99 16 25 C -0.15 -0.63 7.16 31.90 0.23 -0.41 16 26 C 0.04 0.25 7.72 72.67 0.56 0.81 16 27 O -0.39 -5.49 11.01 -148.98 -1.64 -7.13 16 28 N -0.45 -10.46 10.12 -180.83 -1.83 -12.29 16 29 H 0.07 1.77 7.18 -2.39 -0.02 1.75 16 30 H 0.04 1.65 7.18 -2.39 -0.02 1.63 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.38 20.42 6.85 -92.71 -0.64 19.79 16 35 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.07 2.03 8.14 -2.38 -0.02 2.02 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.42 10.50 7.17 -92.71 -0.67 9.83 16 39 H 0.20 3.40 8.03 -2.91 -0.02 3.38 16 40 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.08 0.70 7.69 -2.39 -0.02 0.68 16 42 H 0.11 0.10 8.14 -2.38 -0.02 0.08 16 43 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -73.21 387.33 -0.92 -74.13 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: -0.28 Total: 30.76 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 6.17 Total: 4.02 kcal Atomic # 7 Polarization: -127.89 SS G_CDS: -5.84 Total: -133.73 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -1.71 Total: -27.16 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.28 Total: 3.07 kcal Total: -73.21 -0.92 -74.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714390708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.949 kcal (2) G-P(sol) polarization free energy of solvation -73.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds