Wall clock time and date at job start Sat Apr 11 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46899 * 2 1 4 4 N 1.46495 * 109.47333 * 120.00261 * 2 1 3 5 5 C 1.34783 * 119.99680 * 275.00110 * 4 2 1 6 6 O 1.21279 * 120.00132 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99626 * 180.02562 * 5 4 2 8 8 C 1.50703 * 109.46884 * 179.97438 * 7 5 4 9 9 C 1.33387 * 125.19868 * 90.00235 * 8 7 5 10 10 C 1.38423 * 114.91927 * 179.97438 * 9 8 7 11 11 C 1.33388 * 114.92142 * 0.02562 * 10 9 8 12 12 S 1.75877 * 125.20307 * 269.69344 * 8 7 5 13 13 C 1.53000 * 109.46963 * 240.00408 * 2 1 3 14 14 H 1.09003 * 109.46980 * 299.99542 * 13 2 1 15 15 C 1.52995 * 109.47134 * 179.97438 * 13 2 1 16 16 N 1.46906 * 109.47281 * 59.99745 * 13 2 1 17 17 C 1.46901 * 110.99793 * 205.00148 * 16 13 2 18 18 C 1.50701 * 109.46921 * 179.97438 * 17 16 13 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00273 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47117 * 59.99412 * 25 23 21 27 27 H 1.48498 * 109.47600 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47088 * 299.99811 * 25 23 21 29 29 H 1.08994 * 109.46932 * 299.99653 * 1 2 3 30 30 H 1.09001 * 109.47440 * 59.99832 * 1 2 3 31 31 H 1.09003 * 109.46899 * 180.02562 * 1 2 3 32 32 H 0.97002 * 120.00446 * 95.00048 * 4 2 1 33 33 H 1.08995 * 109.47348 * 300.00041 * 7 5 4 34 34 H 1.09006 * 109.47241 * 60.00381 * 7 5 4 35 35 H 1.07997 * 122.54513 * 359.95576 * 9 8 7 36 36 H 1.07994 * 122.54144 * 180.02562 * 10 9 8 37 37 H 1.08000 * 125.20475 * 180.02562 * 11 10 9 38 38 H 1.09001 * 109.47056 * 59.99890 * 15 13 2 39 39 H 1.09000 * 109.47395 * 179.97438 * 15 13 2 40 40 H 1.09003 * 109.47112 * 299.99827 * 15 13 2 41 41 H 1.00898 * 110.99995 * 328.95225 * 16 13 2 42 42 H 1.09002 * 109.47401 * 59.99808 * 17 16 13 43 43 H 1.09001 * 109.46874 * 299.99821 * 17 16 13 44 44 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 45 45 H 0.97000 * 119.99884 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3571 6 8 1.8591 1.1586 2.4115 7 6 2.6501 -0.7286 3.5874 8 6 2.7012 0.2399 4.7409 9 6 1.7037 0.4707 5.5959 10 6 1.9821 1.4052 6.5783 11 6 3.2055 1.9337 6.5209 12 16 4.0878 1.2330 5.1702 13 6 2.0400 -0.7212 -1.2493 14 1 1.6767 -1.7489 -1.2493 15 6 3.5700 -0.7206 -1.2497 16 7 1.5503 -0.0286 -2.4487 17 6 1.4875 -0.9437 -3.5962 18 6 0.9813 -0.1996 -4.8050 19 8 0.7011 0.9774 -4.7191 20 7 0.8412 -0.8417 -5.9817 21 6 0.3812 -0.1646 -7.0815 22 1 0.1309 0.8832 -7.0048 23 6 0.2362 -0.8266 -8.2944 24 7 0.5404 -2.1017 -8.3876 25 14 -0.3898 0.0961 -9.7932 26 1 0.5321 1.2178 -10.1046 27 1 -0.4529 -0.8288 -10.9533 28 1 -1.7457 0.6330 -9.5132 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.2492 -1.6318 1.1525 33 1 1.9780 -1.5509 3.8324 34 1 3.6495 -1.1203 3.3977 35 1 0.7510 -0.0331 5.5267 36 1 1.2633 1.6852 7.3341 37 1 3.5963 2.6746 7.2026 38 1 3.9337 -1.2343 -0.3597 39 1 3.9333 -1.2348 -2.1395 40 1 3.9329 0.3072 -1.2499 41 1 0.6526 0.3993 -2.2780 42 1 0.8111 -1.7674 -3.3675 43 1 2.4829 -1.3374 -3.8018 44 1 1.0657 -1.7828 -6.0504 45 1 0.4395 -2.5637 -9.2345 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725103218.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:35 Heat of formation + Delta-G solvation = -40.726950 kcal Electronic energy + Delta-G solvation = -26017.187271 eV Core-core repulsion = 22161.264303 eV Total energy + Delta-G solvation = -3855.922968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.24809 -38.56948 -37.99986 -37.16878 -34.46347 -33.80198 -32.68755 -31.27235 -30.62376 -29.85664 -27.43339 -26.37177 -24.33533 -23.95052 -22.99336 -20.75634 -20.52849 -19.53461 -19.30799 -17.96978 -17.61844 -17.38385 -16.38957 -16.06073 -15.88861 -15.42688 -15.27296 -14.61795 -14.41694 -14.02383 -14.00424 -13.80402 -13.54800 -13.36746 -13.16912 -12.99311 -12.85013 -12.67974 -12.45300 -12.36588 -11.94668 -11.89769 -11.69817 -11.57739 -11.44560 -11.33475 -11.02730 -11.02505 -10.63689 -10.44346 -10.21833 -10.12604 -9.50454 -9.29360 -8.95131 -8.70408 -8.46656 -8.11409 -7.96629 -6.42130 -3.82975 0.69453 1.35778 1.72593 2.40922 2.43646 2.95589 3.20213 3.25848 3.30552 3.89960 4.10215 4.22527 4.33036 4.48324 4.67201 4.71672 4.79350 4.84189 4.97286 5.10234 5.14372 5.24564 5.26979 5.29356 5.34952 5.48382 5.62502 5.65637 5.76796 5.80661 5.86432 5.94976 5.95432 5.99151 6.11875 6.18945 6.21161 6.28302 6.34338 7.16987 7.25643 7.54801 7.62268 8.00554 8.05645 8.60705 9.17405 9.53514 10.05057 10.75470 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.037903 B = 0.001633 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.558314 B =17138.255418 C =17271.402102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 H 0.099 0.901 4 N -0.722 5.722 5 C 0.513 3.487 6 O -0.523 6.523 7 C -0.071 4.071 8 C -0.159 4.159 9 C -0.128 4.128 10 C -0.133 4.133 11 C -0.214 4.214 12 S 0.109 5.891 13 C 0.078 3.922 14 H 0.046 0.954 15 C -0.139 4.139 16 N -0.661 5.661 17 C 0.052 3.948 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.399 0.601 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.163 0.837 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.352 0.648 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.887 -3.500 28.695 29.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.037 3.963 3 H 0.117 0.883 4 N -0.375 5.375 5 C 0.298 3.702 6 O -0.398 6.398 7 C -0.113 4.113 8 C -0.277 4.277 9 C -0.159 4.159 10 C -0.164 4.164 11 C -0.350 4.350 12 S 0.373 5.627 13 C -0.033 4.033 14 H 0.064 0.936 15 C -0.197 4.197 16 N -0.297 5.297 17 C -0.081 4.081 18 C 0.225 3.775 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.233 0.767 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.180 0.820 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.174 0.826 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.542 -1.505 27.860 28.901 hybrid contribution -2.269 -1.411 -0.115 2.675 sum 5.273 -2.916 27.744 28.391 Atomic orbital electron populations 1.22255 0.95241 1.02156 1.03177 1.21074 0.93903 0.98274 0.83088 0.88268 1.45986 1.67911 1.13952 1.09603 1.20433 0.78068 0.87550 0.84149 1.90760 1.48746 1.15678 1.84618 1.20162 1.04213 0.96961 0.89957 1.23764 0.98224 1.04245 1.01429 1.20057 0.99547 1.00420 0.95832 1.20123 0.96941 0.98596 1.00752 1.25608 0.98966 1.07128 1.03306 1.84252 1.15879 1.37112 1.25463 1.21736 0.96521 0.95815 0.89219 0.93590 1.21804 0.94172 1.02794 1.00964 1.60177 1.35373 1.31866 1.02287 1.21721 1.01325 0.93826 0.91217 1.19793 0.85014 0.88214 0.84439 1.90532 1.55261 1.16101 1.84730 1.41849 1.57765 1.12423 1.07944 1.19663 1.40007 0.96456 0.86830 0.87951 1.25256 0.97637 0.95781 0.99227 1.69605 1.48629 1.08858 1.27256 0.85912 0.79426 0.78843 0.80010 1.19877 1.20984 1.19923 0.91723 0.90812 0.92526 0.76697 0.86989 0.87744 0.84512 0.84350 0.81959 0.92970 0.92292 0.91733 0.82566 0.93849 0.89533 0.77478 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 9.25 37.16 0.34 -1.54 16 2 C 0.14 1.56 2.29 -67.93 -0.16 1.41 16 3 H 0.10 1.38 7.58 -51.93 -0.39 0.98 16 4 N -0.72 -6.05 4.38 -53.80 -0.24 -6.29 16 5 C 0.51 5.12 7.79 -10.98 -0.09 5.03 16 6 O -0.52 -7.62 15.70 5.56 0.09 -7.54 16 7 C -0.07 -0.47 6.19 -29.03 -0.18 -0.65 16 8 C -0.16 -1.41 5.00 -36.00 -0.18 -1.59 16 9 C -0.13 -1.11 10.05 -41.21 -0.41 -1.52 16 10 C -0.13 -1.08 10.18 -41.21 -0.42 -1.50 16 11 C -0.21 -1.72 11.23 29.04 0.33 -1.40 16 12 S 0.11 0.96 23.33 -107.50 -2.51 -1.55 16 13 C 0.08 0.90 2.28 -67.71 -0.15 0.74 16 14 H 0.05 0.48 7.80 -51.93 -0.40 0.07 16 15 C -0.14 -1.52 9.26 37.16 0.34 -1.18 16 16 N -0.66 -10.43 5.93 -107.99 -0.64 -11.07 16 17 C 0.05 0.89 5.97 -4.97 -0.03 0.86 16 18 C 0.44 10.33 7.82 -10.98 -0.09 10.25 16 19 O -0.58 -15.84 15.78 5.55 0.09 -15.75 16 20 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 21 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 25 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.89 6.21 -51.93 -0.32 0.57 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.40 2.15 8.39 -40.82 -0.34 1.81 16 33 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.05 0.43 7.45 -51.93 -0.39 0.05 16 39 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.35 5.78 5.86 -39.29 -0.23 5.55 16 42 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 43 H 0.09 1.38 7.44 -51.93 -0.39 0.99 16 44 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -34.24 391.29 -9.09 -43.33 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -6.49 Total: 13.95 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -0.93 Total: 0.91 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.21 Total: -55.29 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.17 Total: -23.29 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.51 Total: -1.55 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.24 -9.09 -43.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725103218.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.605 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds