Wall clock time and date at job start Sat Apr 11 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47154 * 2 1 4 4 C 1.47196 * 109.47105 * 239.99765 * 2 1 3 5 5 N 2.60793 * 109.47250 * 239.99829 * 2 1 3 6 6 C 1.50702 * 109.47169 * 119.99927 * 2 1 3 7 7 O 1.21284 * 120.00160 * 102.08338 * 6 2 1 8 8 N 1.34782 * 120.00218 * 282.08207 * 6 2 1 9 9 C 1.46492 * 120.00340 * 183.97161 * 8 6 2 10 10 C 1.46507 * 119.99751 * 3.97039 * 8 6 2 11 11 C 1.53346 * 109.41728 * 246.06723 * 10 8 6 12 12 C 1.53189 * 109.14826 * 178.67631 * 11 10 8 13 13 N 1.46928 * 108.89306 * 54.57536 * 12 11 10 14 14 C 1.34775 * 120.63012 * 126.34872 * 13 12 11 15 15 O 1.21290 * 119.99981 * 359.97438 * 14 13 12 16 16 C 1.50694 * 120.00088 * 180.02562 * 14 13 12 17 17 S 1.80999 * 109.47299 * 179.97438 * 16 14 13 18 18 C 1.76207 * 100.00273 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99645 * 0.02562 * 18 17 16 20 20 C 1.38790 * 120.00115 * 180.02562 * 18 17 16 21 21 N 1.31634 * 120.00070 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00110 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46873 * 90.00272 * 22 20 18 24 24 H 1.48493 * 109.47275 * 210.00147 * 22 20 18 25 25 H 1.48501 * 109.47292 * 330.00437 * 22 20 18 26 26 C 1.46919 * 118.73830 * 306.31756 * 13 12 11 27 27 C 1.53038 * 109.46055 * 125.93679 * 10 8 6 28 28 H 1.09006 * 109.47130 * 304.47050 * 1 2 3 29 29 H 1.08992 * 109.47139 * 64.47265 * 1 2 3 30 30 H 1.08996 * 109.47360 * 184.47442 * 1 2 3 31 31 H 1.09005 * 109.47153 * 273.53134 * 9 8 6 32 32 H 1.09003 * 109.47043 * 33.52647 * 9 8 6 33 33 H 1.08999 * 109.47515 * 153.53562 * 9 8 6 34 34 H 1.08999 * 109.45734 * 5.96498 * 10 8 6 35 35 H 1.08999 * 109.68965 * 58.70962 * 11 10 8 36 36 H 1.09003 * 109.47179 * 298.51221 * 11 10 8 37 37 H 1.08997 * 109.58833 * 294.71386 * 12 11 10 38 38 H 1.08998 * 109.58788 * 174.43595 * 12 11 10 39 39 H 1.09003 * 109.47267 * 299.99216 * 16 14 13 40 40 H 1.09005 * 109.47571 * 59.99253 * 16 14 13 41 41 H 0.97002 * 120.00088 * 179.97438 * 21 20 18 42 42 H 1.09007 * 109.58773 * 173.39602 * 26 13 12 43 43 H 1.08998 * 109.59060 * 293.68237 * 26 13 12 44 44 H 1.09004 * 109.49790 * 61.43347 * 27 10 8 45 45 H 1.09000 * 109.49802 * 301.33912 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6939 -1.2018 5 7 2.3993 -1.2294 -2.1293 6 6 2.0323 -0.7104 1.2305 7 8 2.4417 -1.8491 1.1487 8 7 2.0266 -0.0804 2.4220 9 6 2.5947 -0.7382 3.6012 10 6 1.4522 1.2624 2.5378 11 6 2.5626 2.2644 2.8763 12 6 1.9611 3.6706 2.9633 13 7 0.8483 3.6536 3.9226 14 6 0.8135 4.5258 4.9494 15 8 1.7065 5.3347 5.0886 16 6 -0.3344 4.4954 5.9252 17 16 -0.0941 5.7779 7.1797 18 6 -1.5373 5.5233 8.1580 19 1 -2.2406 4.7483 7.8914 20 6 -1.7703 6.3189 9.2712 21 7 -2.8482 6.1284 10.0023 22 14 -0.5536 7.6590 9.7327 23 1 -0.9325 8.9258 9.0567 24 1 -0.5715 7.8585 11.2040 25 1 0.8105 7.2581 9.3041 26 6 -0.2260 2.6680 3.7407 27 6 0.3967 1.2717 3.6458 28 1 -0.3634 0.5817 0.8473 29 1 -0.3633 0.4428 -0.9273 30 1 -0.3634 -1.0245 0.0802 31 1 1.8343 -1.3620 4.0709 32 1 3.4385 -1.3589 3.2997 33 1 2.9341 0.0169 4.3103 34 1 0.9881 1.5416 1.5918 35 1 3.3263 2.2429 2.0989 36 1 3.0105 2.0004 3.8343 37 1 1.5935 3.9721 1.9825 38 1 2.7229 4.3737 3.2998 39 1 -1.2684 4.6774 5.3935 40 1 -0.3755 3.5188 6.4077 41 1 -3.0109 6.6841 10.7805 42 1 -0.9062 2.7077 4.5916 43 1 -0.7737 2.8892 2.8246 44 1 0.8651 1.0168 4.5966 45 1 -0.3795 0.5420 3.4150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001726328672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:38 Heat of formation + Delta-G solvation = -36.977099 kcal Electronic energy + Delta-G solvation = -27113.382639 eV Core-core repulsion = 23257.622277 eV Total energy + Delta-G solvation = -3855.760362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.18262 -39.92556 -37.90041 -37.02283 -35.53621 -33.88801 -32.49682 -32.26476 -31.51427 -29.19784 -27.85293 -25.86524 -25.66586 -24.92672 -23.63113 -21.62376 -20.57765 -19.39960 -18.18022 -18.02750 -17.67575 -16.86359 -16.20461 -15.97324 -15.76862 -15.55259 -15.01958 -14.96308 -14.84056 -14.42662 -14.19453 -13.89081 -13.76856 -13.52132 -13.36296 -13.20625 -13.07461 -13.01647 -12.83858 -12.65873 -12.61015 -12.40246 -12.20338 -12.10061 -11.87833 -11.70085 -11.38469 -11.28794 -11.18451 -11.05929 -10.65975 -10.33394 -9.91542 -9.61129 -9.21846 -9.05948 -8.81130 -8.55976 -6.98882 -6.34386 -4.06899 1.88483 1.98830 2.32867 2.57572 2.60725 2.82028 3.08437 3.27979 3.28679 3.45562 3.51688 3.76423 4.03609 4.20188 4.24772 4.28059 4.32585 4.44209 4.53710 4.63860 4.80481 4.82643 4.90709 4.92497 5.03089 5.04699 5.07882 5.10864 5.14911 5.19796 5.37884 5.39225 5.43187 5.45185 5.61231 5.64420 5.67641 5.76149 5.88644 5.90358 6.38538 6.71005 7.08040 7.28620 7.50620 7.88402 8.30276 8.35438 9.11759 10.74667 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026849 B = 0.002207 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.617218 B =12684.209241 C =12833.440996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.014 4.014 3 H 0.137 0.863 4 C 0.220 3.780 5 N -0.410 5.410 6 C 0.524 3.476 7 O -0.526 6.526 8 N -0.603 5.603 9 C 0.084 3.916 10 C 0.127 3.873 11 C -0.147 4.147 12 C 0.115 3.885 13 N -0.621 5.621 14 C 0.535 3.465 15 O -0.516 6.516 16 C -0.123 4.123 17 S -0.143 6.143 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.879 5.879 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.109 3.891 27 C -0.146 4.146 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.108 -11.096 -17.945 21.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.039 4.039 3 H 0.155 0.845 4 C -0.099 4.099 5 N -0.085 5.085 6 C 0.309 3.691 7 O -0.401 6.401 8 N -0.335 5.335 9 C -0.058 4.058 10 C 0.024 3.976 11 C -0.186 4.186 12 C -0.008 4.008 13 N -0.357 5.357 14 C 0.323 3.677 15 O -0.390 6.390 16 C -0.273 4.273 17 S 0.083 5.917 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.015 4.015 27 C -0.185 4.185 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.130 -11.275 -19.000 23.542 hybrid contribution -0.945 -0.155 0.718 1.197 sum 7.184 -11.430 -18.282 22.726 Atomic orbital electron populations 1.21901 0.89117 1.04774 1.04803 1.18884 0.99249 1.00003 0.85717 0.84522 1.28057 0.93974 0.93904 0.93991 1.81214 1.07655 1.07744 1.11858 1.19982 0.78726 0.86436 0.83916 1.90793 1.46377 1.17476 1.85455 1.47870 1.59682 1.17272 1.08678 1.21692 0.99220 0.98070 0.86852 1.21565 0.94214 0.81159 1.00660 1.22425 0.97881 0.94707 1.03621 1.21482 0.90235 0.96484 0.92628 1.48101 1.23909 1.35350 1.28385 1.20318 0.87202 0.79740 0.80449 1.90704 1.38425 1.37096 1.72807 1.23314 0.99142 1.05300 0.99543 1.84839 1.34443 1.43751 1.28619 1.22287 1.07076 1.23605 1.13945 0.89371 1.24713 0.95123 0.96726 0.94750 1.69935 1.25518 1.39344 1.16755 0.86740 0.83706 0.82757 0.78673 1.19196 1.19939 1.15946 1.21722 0.89667 0.86499 1.03601 1.22324 0.98655 0.97871 0.99639 0.89479 0.89866 0.90646 0.92127 0.90632 0.90432 0.88131 0.90083 0.90448 0.91333 0.88318 0.88478 0.88487 0.91901 0.88448 0.90842 0.90205 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.39 8.82 37.15 0.33 -0.06 16 2 C -0.01 -0.07 2.23 -94.56 -0.21 -0.28 16 3 H 0.14 0.22 7.08 -51.93 -0.37 -0.15 16 4 C 0.22 1.93 13.95 -20.76 -0.29 1.64 16 5 N -0.41 -4.87 18.54 42.15 0.78 -4.09 16 6 C 0.52 3.95 6.85 -10.98 -0.08 3.88 16 7 O -0.53 -6.37 15.82 5.55 0.09 -6.28 16 8 N -0.60 -3.46 2.76 -173.70 -0.48 -3.94 16 9 C 0.08 0.51 9.27 59.84 0.55 1.06 16 10 C 0.13 0.53 1.78 -67.73 -0.12 0.41 16 11 C -0.15 -0.79 5.45 -26.45 -0.14 -0.93 16 12 C 0.12 0.88 6.42 -3.71 -0.02 0.85 16 13 N -0.62 -6.18 2.97 -172.78 -0.51 -6.70 16 14 C 0.53 8.27 7.72 -10.99 -0.08 8.18 16 15 O -0.52 -10.02 15.27 5.55 0.08 -9.94 16 16 C -0.12 -2.11 4.50 36.00 0.16 -1.95 16 17 S -0.14 -3.41 18.55 -107.50 -1.99 -5.40 16 18 C -0.52 -14.31 10.04 30.94 0.31 -14.00 16 19 H 0.09 2.51 8.03 -52.49 -0.42 2.09 16 20 C 0.10 2.70 5.50 -17.43 -0.10 2.60 16 21 N -0.88 -25.67 13.97 55.49 0.78 -24.90 16 22 Si 0.86 21.04 27.74 -169.99 -4.71 16.33 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.24 -5.76 6.74 56.52 0.38 -5.38 16 26 C 0.11 0.71 6.34 -3.72 -0.02 0.68 16 27 C -0.15 -0.70 5.24 -26.61 -0.14 -0.84 16 28 H 0.09 0.08 6.32 -51.93 -0.33 -0.24 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.55 7.59 -51.93 -0.39 0.15 16 33 H 0.08 0.40 6.64 -51.93 -0.34 0.06 16 34 H 0.10 0.20 4.31 -51.93 -0.22 -0.02 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.53 6.99 -51.93 -0.36 0.16 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.10 0.99 7.00 -51.93 -0.36 0.63 16 39 H 0.10 1.54 7.94 -51.92 -0.41 1.13 16 40 H 0.10 1.54 7.69 -51.91 -0.40 1.14 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.10 0.72 5.93 -51.93 -0.31 0.41 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.49 7.48 -51.93 -0.39 0.10 16 45 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -37.36 378.99 -6.54 -43.90 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: -6.43 Total: -5.93 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 0.15 Total: 1.24 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.56 Total: -39.63 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.17 Total: -16.22 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.71 Total: 16.33 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.99 Total: -5.40 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.36 -6.54 -43.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001726328672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.927 kcal (2) G-P(sol) polarization free energy of solvation -37.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds