Wall clock time and date at job start Sat Apr 11 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47154 * 2 1 4 4 C 1.47196 * 109.47105 * 239.99765 * 2 1 3 5 5 N 2.60793 * 109.47250 * 239.99829 * 2 1 3 6 6 C 1.50702 * 109.47169 * 119.99927 * 2 1 3 7 7 O 1.21284 * 120.00160 * 102.08338 * 6 2 1 8 8 N 1.34782 * 120.00218 * 282.08207 * 6 2 1 9 9 C 1.46492 * 120.00340 * 183.97161 * 8 6 2 10 10 C 1.46507 * 119.99751 * 3.97039 * 8 6 2 11 11 C 1.53346 * 109.41728 * 246.06723 * 10 8 6 12 12 C 1.53189 * 109.14826 * 178.67631 * 11 10 8 13 13 N 1.46928 * 108.89306 * 54.57536 * 12 11 10 14 14 C 1.34775 * 120.63012 * 126.34872 * 13 12 11 15 15 O 1.21290 * 119.99981 * 359.97438 * 14 13 12 16 16 C 1.50694 * 120.00088 * 180.02562 * 14 13 12 17 17 S 1.80999 * 109.47299 * 179.97438 * 16 14 13 18 18 C 1.76207 * 100.00273 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99645 * 0.02562 * 18 17 16 20 20 C 1.38790 * 120.00115 * 180.02562 * 18 17 16 21 21 N 1.31634 * 120.00070 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00110 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46873 * 90.00272 * 22 20 18 24 24 H 1.48493 * 109.47275 * 210.00147 * 22 20 18 25 25 H 1.48501 * 109.47292 * 330.00437 * 22 20 18 26 26 C 1.46919 * 118.73830 * 306.31756 * 13 12 11 27 27 C 1.53038 * 109.46055 * 125.93679 * 10 8 6 28 28 H 1.09006 * 109.47130 * 304.47050 * 1 2 3 29 29 H 1.08992 * 109.47139 * 64.47265 * 1 2 3 30 30 H 1.08996 * 109.47360 * 184.47442 * 1 2 3 31 31 H 1.09005 * 109.47153 * 273.53134 * 9 8 6 32 32 H 1.09003 * 109.47043 * 33.52647 * 9 8 6 33 33 H 1.08999 * 109.47515 * 153.53562 * 9 8 6 34 34 H 1.08999 * 109.45734 * 5.96498 * 10 8 6 35 35 H 1.08999 * 109.68965 * 58.70962 * 11 10 8 36 36 H 1.09003 * 109.47179 * 298.51221 * 11 10 8 37 37 H 1.08997 * 109.58833 * 294.71386 * 12 11 10 38 38 H 1.08998 * 109.58788 * 174.43595 * 12 11 10 39 39 H 1.09003 * 109.47267 * 299.99216 * 16 14 13 40 40 H 1.09005 * 109.47571 * 59.99253 * 16 14 13 41 41 H 0.97002 * 120.00088 * 179.97438 * 21 20 18 42 42 H 1.09007 * 109.58773 * 173.39602 * 26 13 12 43 43 H 1.08998 * 109.59060 * 293.68237 * 26 13 12 44 44 H 1.09004 * 109.49790 * 61.43347 * 27 10 8 45 45 H 1.09000 * 109.49802 * 301.33912 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6939 -1.2018 5 7 2.3993 -1.2294 -2.1293 6 6 2.0323 -0.7104 1.2305 7 8 2.4417 -1.8491 1.1487 8 7 2.0266 -0.0804 2.4220 9 6 2.5947 -0.7382 3.6012 10 6 1.4522 1.2624 2.5378 11 6 2.5626 2.2644 2.8763 12 6 1.9611 3.6706 2.9633 13 7 0.8483 3.6536 3.9226 14 6 0.8135 4.5258 4.9494 15 8 1.7065 5.3347 5.0886 16 6 -0.3344 4.4954 5.9252 17 16 -0.0941 5.7779 7.1797 18 6 -1.5373 5.5233 8.1580 19 1 -2.2406 4.7483 7.8914 20 6 -1.7703 6.3189 9.2712 21 7 -2.8482 6.1284 10.0023 22 14 -0.5536 7.6590 9.7327 23 1 -0.9325 8.9258 9.0567 24 1 -0.5715 7.8585 11.2040 25 1 0.8105 7.2581 9.3041 26 6 -0.2260 2.6680 3.7407 27 6 0.3967 1.2717 3.6458 28 1 -0.3634 0.5817 0.8473 29 1 -0.3633 0.4428 -0.9273 30 1 -0.3634 -1.0245 0.0802 31 1 1.8343 -1.3620 4.0709 32 1 3.4385 -1.3589 3.2997 33 1 2.9341 0.0169 4.3103 34 1 0.9881 1.5416 1.5918 35 1 3.3263 2.2429 2.0989 36 1 3.0105 2.0004 3.8343 37 1 1.5935 3.9721 1.9825 38 1 2.7229 4.3737 3.2998 39 1 -1.2684 4.6774 5.3935 40 1 -0.3755 3.5188 6.4077 41 1 -3.0109 6.6841 10.7805 42 1 -0.9062 2.7077 4.5916 43 1 -0.7737 2.8892 2.8246 44 1 0.8651 1.0168 4.5966 45 1 -0.3795 0.5420 3.4150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001726328672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:37 Heat of formation + Delta-G solvation = -63.056017 kcal Electronic energy + Delta-G solvation = -27114.513505 eV Core-core repulsion = 23257.622277 eV Total energy + Delta-G solvation = -3856.891229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.75942 -40.83125 -38.70653 -37.72646 -36.31494 -34.63486 -34.33326 -33.03882 -32.08733 -30.34490 -28.33579 -27.81922 -26.29564 -25.49152 -24.17819 -22.33370 -21.12870 -20.35793 -19.52911 -18.72301 -18.44833 -17.92658 -17.14405 -16.87912 -16.65481 -16.54593 -16.41362 -15.75358 -15.42828 -15.33211 -14.96807 -14.92240 -14.81651 -14.36615 -14.24157 -14.17103 -13.89128 -13.78166 -13.44495 -13.38432 -13.30693 -13.21094 -13.08955 -12.98867 -12.83274 -12.60379 -12.52684 -12.38621 -12.14484 -11.84074 -11.83903 -11.65358 -11.13946 -10.93133 -10.80806 -10.45707 -9.75727 -9.63561 -8.95106 -8.48280 -6.18161 1.03535 1.31525 1.33588 1.43550 1.49482 1.58581 1.62455 1.69625 2.06789 2.16875 2.27530 2.73591 2.77544 2.90293 3.31159 3.60621 3.67613 3.86557 3.94227 4.02225 4.10774 4.14144 4.27249 4.34875 4.41716 4.46660 4.49295 4.62580 4.68488 4.74394 4.81123 4.84511 4.90395 4.96006 4.97570 5.06791 5.19606 5.26171 5.33812 5.44688 5.66727 5.74221 6.15263 6.21378 6.33497 6.47360 6.97108 6.97643 7.19449 8.63694 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026849 B = 0.002207 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.617218 B =12684.209241 C =12833.440996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.010 4.010 3 H 0.182 0.818 4 C 0.242 3.758 5 N -0.475 5.475 6 C 0.524 3.476 7 O -0.580 6.580 8 N -0.593 5.593 9 C 0.082 3.918 10 C 0.130 3.870 11 C -0.140 4.140 12 C 0.112 3.888 13 N -0.605 5.605 14 C 0.535 3.465 15 O -0.566 6.566 16 C -0.106 4.106 17 S -0.184 6.184 18 C -0.524 4.524 19 H 0.065 0.935 20 C 0.045 3.955 21 N -0.917 5.917 22 Si 0.912 3.088 23 H -0.263 1.263 24 H -0.263 1.263 25 H -0.237 1.237 26 C 0.101 3.899 27 C -0.141 4.141 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.276 0.724 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.064 0.936 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.746 -10.688 -19.699 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 H 0.199 0.801 4 C -0.077 4.077 5 N -0.151 5.151 6 C 0.311 3.689 7 O -0.459 6.459 8 N -0.323 5.323 9 C -0.060 4.060 10 C 0.027 3.973 11 C -0.179 4.179 12 C -0.010 4.010 13 N -0.339 5.339 14 C 0.322 3.678 15 O -0.445 6.445 16 C -0.257 4.257 17 S 0.043 5.957 18 C -0.671 4.671 19 H 0.083 0.917 20 C -0.161 4.161 21 N -0.555 5.555 22 Si 0.735 3.265 23 H -0.188 1.188 24 H -0.187 1.187 25 H -0.161 1.161 26 C -0.022 4.022 27 C -0.180 4.180 28 H 0.133 0.867 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.154 0.846 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.123 0.877 38 H 0.089 0.911 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.130 0.870 44 H 0.083 0.917 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.743 -10.889 -20.777 24.702 hybrid contribution -0.861 -0.420 1.183 1.522 sum 6.882 -11.309 -19.594 23.647 Atomic orbital electron populations 1.22007 0.86928 1.04647 1.06931 1.19248 1.00753 1.01015 0.82351 0.80132 1.28834 0.92310 0.92573 0.93952 1.81228 1.09863 1.09776 1.14237 1.20437 0.77801 0.85829 0.84879 1.90785 1.48911 1.19983 1.86233 1.47863 1.58855 1.17562 1.08060 1.21681 0.98852 0.98308 0.87187 1.21715 0.93595 0.79776 1.02173 1.22361 0.98535 0.93483 1.03538 1.21708 0.88962 0.97254 0.93110 1.48105 1.25135 1.34026 1.26626 1.19958 0.85962 0.80529 0.81370 1.90691 1.39851 1.39601 1.74323 1.23296 1.01119 1.03046 0.98230 1.84790 1.32745 1.47325 1.30838 1.22446 1.07790 1.22540 1.14352 0.91696 1.25539 0.96683 0.98868 0.94961 1.70015 1.27174 1.40717 1.17577 0.85894 0.81548 0.80208 0.78894 1.18776 1.18715 1.16088 1.22073 0.88741 0.86256 1.05113 1.22288 0.99254 0.97216 0.99252 0.86717 0.88183 0.92173 0.91965 0.92218 0.89542 0.84593 0.88132 0.92242 0.87700 0.91087 0.86786 0.87118 0.91489 0.89401 0.86986 0.91725 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.08 8.82 71.98 0.63 0.55 16 2 C -0.01 -0.05 2.23 -13.35 -0.03 -0.08 16 3 H 0.18 -0.57 7.08 -2.39 -0.02 -0.58 16 4 C 0.24 3.80 13.95 89.44 1.25 5.05 16 5 N -0.48 -11.12 18.54 20.00 0.37 -10.75 16 6 C 0.52 6.51 6.85 87.66 0.60 7.11 16 7 O -0.58 -13.67 15.82 -3.04 -0.05 -13.72 16 8 N -0.59 -4.90 2.76 -821.85 -2.27 -7.17 16 9 C 0.08 0.87 9.27 127.77 1.18 2.06 16 10 C 0.13 0.45 1.78 45.12 0.08 0.53 16 11 C -0.14 -0.95 5.45 30.77 0.17 -0.79 16 12 C 0.11 1.28 6.42 86.36 0.55 1.84 16 13 N -0.60 -10.02 2.97 -818.93 -2.43 -12.46 16 14 C 0.53 15.63 7.72 87.66 0.68 16.31 16 15 O -0.57 -21.73 15.27 -3.06 -0.05 -21.77 16 16 C -0.11 -3.52 4.50 71.23 0.32 -3.20 16 17 S -0.18 -8.74 18.55 -56.49 -1.05 -9.79 16 18 C -0.52 -29.03 10.04 67.95 0.68 -28.34 16 19 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 20 C 0.04 2.54 5.50 84.85 0.47 3.01 16 21 N -0.92 -54.17 13.97 21.65 0.30 -53.86 16 22 Si 0.91 43.65 27.74 68.60 1.90 45.55 16 23 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16 24 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.24 -11.31 6.74 99.48 0.67 -10.64 16 26 C 0.10 0.84 6.34 86.36 0.55 1.38 16 27 C -0.14 -0.73 5.24 30.67 0.16 -0.57 16 28 H 0.11 -0.55 6.32 -2.38 -0.02 -0.57 16 29 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.06 0.85 7.59 -2.39 -0.02 0.83 16 33 H 0.09 0.76 6.64 -2.39 -0.02 0.74 16 34 H 0.14 -0.44 4.31 -2.39 -0.01 -0.45 16 35 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.06 0.66 6.99 -2.39 -0.02 0.65 16 37 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.07 1.30 7.00 -2.39 -0.02 1.28 16 39 H 0.11 3.39 7.94 -2.39 -0.02 3.37 16 40 H 0.11 3.36 7.69 -2.39 -0.02 3.34 16 41 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.09 0.97 5.93 -2.38 -0.01 0.96 16 43 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.06 0.59 7.48 -2.39 -0.02 0.57 16 45 H 0.11 0.19 8.14 -2.39 -0.02 0.18 16 Total: -1.00 -87.36 378.99 5.00 -82.36 By element: Atomic # 1 Polarization: -4.23 SS G_CDS: 0.98 Total: -3.25 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 7.29 Total: 4.86 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -4.03 Total: -84.24 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -0.09 Total: -35.49 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.90 Total: 45.55 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.05 Total: -9.79 kcal Total: -87.36 5.00 -82.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001726328672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.308 kcal (2) G-P(sol) polarization free energy of solvation -87.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds