Wall clock time and date at job start Sat Apr 11 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46807 * 2 1 4 4 C 1.47196 * 109.47212 * 119.99952 * 2 1 3 5 5 N 2.60800 * 109.47271 * 119.99874 * 2 1 3 6 6 C 1.50697 * 109.47110 * 240.00068 * 2 1 3 7 7 O 1.21278 * 120.00271 * 250.87054 * 6 2 1 8 8 N 1.34779 * 120.00091 * 70.87180 * 6 2 1 9 9 C 1.46495 * 120.00134 * 184.35005 * 8 6 2 10 10 C 1.46502 * 119.99963 * 4.34644 * 8 6 2 11 11 C 1.53035 * 109.46289 * 234.84657 * 10 8 6 12 12 C 1.53190 * 109.31566 * 178.60256 * 11 10 8 13 13 N 1.46925 * 108.76594 * 54.65301 * 12 11 10 14 14 C 1.34771 * 120.62935 * 126.36232 * 13 12 11 15 15 O 1.21282 * 120.00161 * 180.02562 * 14 13 12 16 16 C 1.50703 * 120.00001 * 0.02571 * 14 13 12 17 17 S 1.81008 * 109.46994 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99743 * 180.02562 * 17 16 14 19 19 H 1.07993 * 120.00189 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99763 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99801 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00013 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47150 * 89.99854 * 22 20 18 24 24 H 1.48502 * 109.47139 * 209.99758 * 22 20 18 25 25 H 1.48497 * 109.47115 * 329.99897 * 22 20 18 26 26 C 1.46925 * 118.74130 * 306.38800 * 13 12 11 27 27 C 1.53040 * 109.45915 * 114.79208 * 10 8 6 28 28 H 1.08996 * 109.47164 * 176.14246 * 1 2 3 29 29 H 1.09006 * 109.46852 * 296.14351 * 1 2 3 30 30 H 1.09001 * 109.46967 * 56.13674 * 1 2 3 31 31 H 1.09005 * 109.47401 * 95.13694 * 9 8 6 32 32 H 1.09005 * 109.47521 * 215.13469 * 9 8 6 33 33 H 1.09002 * 109.47347 * 335.13286 * 9 8 6 34 34 H 1.08996 * 109.45813 * 354.82138 * 10 8 6 35 35 H 1.08998 * 109.50124 * 298.56917 * 11 10 8 36 36 H 1.09006 * 109.49556 * 58.66102 * 11 10 8 37 37 H 1.09000 * 109.59498 * 294.86771 * 12 11 10 38 38 H 1.08992 * 109.70509 * 174.50760 * 12 11 10 39 39 H 1.08999 * 109.47160 * 299.99974 * 16 14 13 40 40 H 1.08998 * 109.47217 * 60.00175 * 16 14 13 41 41 H 0.97005 * 119.99725 * 180.02562 * 21 20 18 42 42 H 1.09006 * 109.58650 * 293.82175 * 26 13 12 43 43 H 1.08998 * 109.70548 * 173.46055 * 26 13 12 44 44 H 1.09004 * 109.49651 * 301.33911 * 27 10 8 45 45 H 1.09004 * 109.49967 * 61.40070 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3994 -1.2294 2.1294 6 6 2.0323 -0.7104 -1.2304 7 8 2.5590 -1.7982 -1.1301 8 7 1.8964 -0.1368 -2.4425 9 6 2.2974 -0.8669 -3.6476 10 6 1.3475 1.2169 -2.5548 11 6 0.1519 1.2047 -3.5100 12 6 -0.4408 2.6146 -3.5980 13 7 0.6247 3.5524 -3.9772 14 6 0.4741 4.3704 -5.0377 15 8 1.3612 5.1398 -5.3408 16 6 -0.7966 4.3289 -5.8468 17 16 -0.6950 5.5359 -7.1919 18 6 -2.2644 5.2807 -7.9511 19 1 -2.9457 4.5456 -7.5489 20 6 -2.6251 6.0244 -9.0661 21 7 -1.7948 6.9207 -9.5561 22 14 -4.2892 5.7544 -9.8706 23 1 -5.2910 6.6590 -9.2513 24 1 -4.1899 6.0463 -11.3233 25 1 -4.7096 4.3435 -9.6768 26 6 1.8577 3.5813 -3.1787 27 6 2.4244 2.1605 -3.0952 28 1 -0.3633 -1.0253 -0.0691 29 1 -0.3633 0.4528 0.9226 30 1 -0.3633 0.5726 -0.8534 31 1 1.4280 -1.3653 -4.0766 32 1 2.7113 -0.1684 -4.3748 33 1 3.0511 -1.6103 -3.3881 34 1 1.0238 1.5601 -1.5723 35 1 0.4798 0.8854 -4.4993 36 1 -0.6049 0.5147 -3.1368 37 1 -0.8509 2.8998 -2.6292 38 1 -1.2302 2.6351 -4.3492 39 1 -0.9296 3.3305 -6.2634 40 1 -1.6439 4.5708 -5.2053 41 1 -2.0470 7.4408 -10.3351 42 1 1.6351 3.9453 -2.1756 43 1 2.5871 4.2383 -3.6524 44 1 3.2853 2.1508 -2.4267 45 1 2.7312 1.8317 -4.0882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001726328673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:41 Heat of formation + Delta-G solvation = -36.825991 kcal Electronic energy + Delta-G solvation = -27091.459275 eV Core-core repulsion = 23235.705465 eV Total energy + Delta-G solvation = -3855.753809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.17103 -39.84252 -37.83654 -37.00089 -35.47966 -33.87159 -32.48332 -32.19523 -31.46036 -29.06504 -27.81235 -25.81933 -25.55341 -24.87735 -23.57571 -21.56430 -20.53328 -19.31976 -18.14404 -17.99356 -17.66340 -16.75060 -16.23107 -15.94184 -15.70616 -15.45399 -14.96804 -14.85476 -14.77232 -14.38706 -14.14494 -13.96494 -13.71523 -13.46377 -13.31738 -13.10346 -13.06429 -12.99664 -12.78297 -12.55208 -12.46556 -12.35202 -12.17169 -12.01014 -11.81472 -11.63597 -11.30595 -11.14507 -11.11067 -11.07392 -10.80828 -10.32064 -9.86551 -9.49136 -9.18418 -9.12013 -8.72021 -8.29359 -6.56695 -6.27095 -3.98307 1.93241 1.98479 2.34922 2.61720 2.79947 2.94659 3.18123 3.20762 3.25968 3.28521 3.49987 3.78666 4.07273 4.14459 4.22247 4.29944 4.34549 4.49858 4.64422 4.77455 4.85892 4.91386 4.93394 5.03019 5.07412 5.08214 5.12758 5.19207 5.21710 5.38220 5.42360 5.44517 5.48308 5.52030 5.66492 5.75934 5.77739 5.81301 5.93525 6.02066 6.47708 6.73019 7.10251 7.39391 7.52463 7.53976 8.29358 8.43715 9.18323 10.80212 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023043 B = 0.002196 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.841098 B =12745.868861 C =13051.107668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.014 4.014 3 H 0.138 0.862 4 C 0.221 3.779 5 N -0.410 5.410 6 C 0.525 3.475 7 O -0.527 6.527 8 N -0.602 5.602 9 C 0.080 3.920 10 C 0.128 3.872 11 C -0.147 4.147 12 C 0.110 3.890 13 N -0.623 5.623 14 C 0.536 3.464 15 O -0.514 6.514 16 C -0.151 4.151 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.116 3.884 27 C -0.147 4.147 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.067 0.933 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.259 -12.641 16.788 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.039 4.039 3 H 0.156 0.844 4 C -0.099 4.099 5 N -0.085 5.085 6 C 0.310 3.690 7 O -0.403 6.403 8 N -0.335 5.335 9 C -0.062 4.062 10 C 0.025 3.975 11 C -0.186 4.186 12 C -0.014 4.014 13 N -0.360 5.360 14 C 0.324 3.676 15 O -0.388 6.388 16 C -0.302 4.302 17 S 0.165 5.835 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.008 4.008 27 C -0.186 4.186 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.117 0.883 44 H 0.098 0.902 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.485 -12.759 17.627 22.441 hybrid contribution -2.256 -0.854 -0.638 2.495 sum 3.229 -13.613 16.989 22.008 Atomic orbital electron populations 1.21926 0.89163 1.04721 1.04870 1.18877 0.99181 1.00097 0.85697 0.84416 1.28054 0.93933 0.93919 0.93973 1.81211 1.07626 1.07751 1.11921 1.19981 0.79108 0.85883 0.84023 1.90787 1.42697 1.20963 1.85846 1.47840 1.63111 1.16333 1.06168 1.21720 1.01095 0.97300 0.86093 1.21489 0.94042 0.81051 1.00898 1.22342 0.97411 0.97881 1.00964 1.21686 0.90385 0.87261 1.02043 1.48136 1.17548 1.39762 1.30510 1.20353 0.88805 0.79172 0.79247 1.90705 1.42659 1.37748 1.67657 1.23558 0.97154 1.06572 1.02902 1.85443 1.24404 1.45903 1.27707 1.22840 1.02451 1.26384 1.16708 0.90929 1.24996 0.98091 0.94493 0.96006 1.70016 1.35407 1.21898 1.22862 0.86173 0.82275 0.78662 0.78418 1.20252 1.20754 1.19691 1.21466 0.87551 0.96035 0.95738 1.22358 0.98073 0.95118 1.03047 0.90740 0.89884 0.89405 0.92119 0.90703 0.90033 0.88186 0.90210 0.89822 0.91034 0.88530 0.89253 0.89209 0.92145 0.91451 0.88282 0.90174 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 8.80 37.16 0.33 -0.08 16 2 C -0.01 -0.07 2.23 -94.56 -0.21 -0.28 16 3 H 0.14 0.25 7.08 -51.93 -0.37 -0.12 16 4 C 0.22 1.97 13.91 -20.76 -0.29 1.68 16 5 N -0.41 -4.94 18.54 42.15 0.78 -4.16 16 6 C 0.52 4.05 6.91 -10.99 -0.08 3.97 16 7 O -0.53 -6.47 15.56 5.56 0.09 -6.38 16 8 N -0.60 -3.59 2.76 -173.89 -0.48 -4.07 16 9 C 0.08 0.50 9.44 59.84 0.57 1.07 16 10 C 0.13 0.58 1.63 -67.89 -0.11 0.47 16 11 C -0.15 -0.74 5.05 -26.61 -0.13 -0.87 16 12 C 0.11 0.76 6.34 -3.71 -0.02 0.74 16 13 N -0.62 -6.65 2.97 -172.77 -0.51 -7.16 16 14 C 0.54 8.82 7.72 -10.99 -0.08 8.73 16 15 O -0.51 -10.62 15.28 5.56 0.08 -10.54 16 16 C -0.15 -2.74 4.50 36.01 0.16 -2.58 16 17 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 18 C -0.54 -14.53 9.50 30.94 0.29 -14.24 16 19 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 20 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 21 N -0.87 -25.32 13.22 55.49 0.73 -24.59 16 22 Si 0.92 20.60 29.55 -169.99 -5.02 15.57 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 C 0.12 0.96 6.43 -3.71 -0.02 0.94 16 27 C -0.15 -0.88 5.39 -26.61 -0.14 -1.02 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.09 0.10 5.69 -51.93 -0.30 -0.19 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.42 6.75 -51.93 -0.35 0.07 16 33 H 0.08 0.62 7.22 -51.93 -0.38 0.25 16 34 H 0.10 0.23 4.45 -51.93 -0.23 0.00 16 35 H 0.08 0.51 7.61 -51.93 -0.40 0.12 16 36 H 0.08 0.30 7.83 -51.93 -0.41 -0.11 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 0.75 5.93 -51.93 -0.31 0.44 16 39 H 0.09 1.48 7.69 -51.92 -0.40 1.08 16 40 H 0.09 1.48 7.94 -51.92 -0.41 1.07 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 1.08 7.01 -51.93 -0.36 0.71 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.58 6.93 -51.93 -0.36 0.22 16 LS Contribution 380.23 15.07 5.73 5.73 Total: -1.00 -37.66 380.23 -7.00 -44.67 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -6.35 Total: -5.74 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 0.16 Total: 0.45 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.52 Total: -39.98 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.17 Total: -16.92 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.66 -7.00 -44.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001726328673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.841 kcal (2) G-P(sol) polarization free energy of solvation -37.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds