Wall clock time and date at job start Sat Apr 11 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46807 * 2 1 4 4 C 1.47196 * 109.47212 * 119.99952 * 2 1 3 5 5 N 2.60800 * 109.47271 * 119.99874 * 2 1 3 6 6 C 1.50697 * 109.47110 * 240.00068 * 2 1 3 7 7 O 1.21278 * 120.00271 * 250.87054 * 6 2 1 8 8 N 1.34779 * 120.00091 * 70.87180 * 6 2 1 9 9 C 1.46495 * 120.00134 * 184.35005 * 8 6 2 10 10 C 1.46502 * 119.99963 * 4.34644 * 8 6 2 11 11 C 1.53035 * 109.46289 * 234.84657 * 10 8 6 12 12 C 1.53190 * 109.31566 * 178.60256 * 11 10 8 13 13 N 1.46925 * 108.76594 * 54.65301 * 12 11 10 14 14 C 1.34771 * 120.62935 * 126.36232 * 13 12 11 15 15 O 1.21282 * 120.00161 * 180.02562 * 14 13 12 16 16 C 1.50703 * 120.00001 * 0.02571 * 14 13 12 17 17 S 1.81008 * 109.46994 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99743 * 180.02562 * 17 16 14 19 19 H 1.07993 * 120.00189 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99763 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99801 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00013 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47150 * 89.99854 * 22 20 18 24 24 H 1.48502 * 109.47139 * 209.99758 * 22 20 18 25 25 H 1.48497 * 109.47115 * 329.99897 * 22 20 18 26 26 C 1.46925 * 118.74130 * 306.38800 * 13 12 11 27 27 C 1.53040 * 109.45915 * 114.79208 * 10 8 6 28 28 H 1.08996 * 109.47164 * 176.14246 * 1 2 3 29 29 H 1.09006 * 109.46852 * 296.14351 * 1 2 3 30 30 H 1.09001 * 109.46967 * 56.13674 * 1 2 3 31 31 H 1.09005 * 109.47401 * 95.13694 * 9 8 6 32 32 H 1.09005 * 109.47521 * 215.13469 * 9 8 6 33 33 H 1.09002 * 109.47347 * 335.13286 * 9 8 6 34 34 H 1.08996 * 109.45813 * 354.82138 * 10 8 6 35 35 H 1.08998 * 109.50124 * 298.56917 * 11 10 8 36 36 H 1.09006 * 109.49556 * 58.66102 * 11 10 8 37 37 H 1.09000 * 109.59498 * 294.86771 * 12 11 10 38 38 H 1.08992 * 109.70509 * 174.50760 * 12 11 10 39 39 H 1.08999 * 109.47160 * 299.99974 * 16 14 13 40 40 H 1.08998 * 109.47217 * 60.00175 * 16 14 13 41 41 H 0.97005 * 119.99725 * 180.02562 * 21 20 18 42 42 H 1.09006 * 109.58650 * 293.82175 * 26 13 12 43 43 H 1.08998 * 109.70548 * 173.46055 * 26 13 12 44 44 H 1.09004 * 109.49651 * 301.33911 * 27 10 8 45 45 H 1.09004 * 109.49967 * 61.40070 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3994 -1.2294 2.1294 6 6 2.0323 -0.7104 -1.2304 7 8 2.5590 -1.7982 -1.1301 8 7 1.8964 -0.1368 -2.4425 9 6 2.2974 -0.8669 -3.6476 10 6 1.3475 1.2169 -2.5548 11 6 0.1519 1.2047 -3.5100 12 6 -0.4408 2.6146 -3.5980 13 7 0.6247 3.5524 -3.9772 14 6 0.4741 4.3704 -5.0377 15 8 1.3612 5.1398 -5.3408 16 6 -0.7966 4.3289 -5.8468 17 16 -0.6950 5.5359 -7.1919 18 6 -2.2644 5.2807 -7.9511 19 1 -2.9457 4.5456 -7.5489 20 6 -2.6251 6.0244 -9.0661 21 7 -1.7948 6.9207 -9.5561 22 14 -4.2892 5.7544 -9.8706 23 1 -5.2910 6.6590 -9.2513 24 1 -4.1899 6.0463 -11.3233 25 1 -4.7096 4.3435 -9.6768 26 6 1.8577 3.5813 -3.1787 27 6 2.4244 2.1605 -3.0952 28 1 -0.3633 -1.0253 -0.0691 29 1 -0.3633 0.4528 0.9226 30 1 -0.3633 0.5726 -0.8534 31 1 1.4280 -1.3653 -4.0766 32 1 2.7113 -0.1684 -4.3748 33 1 3.0511 -1.6103 -3.3881 34 1 1.0238 1.5601 -1.5723 35 1 0.4798 0.8854 -4.4993 36 1 -0.6049 0.5147 -3.1368 37 1 -0.8509 2.8998 -2.6292 38 1 -1.2302 2.6351 -4.3492 39 1 -0.9296 3.3305 -6.2634 40 1 -1.6439 4.5708 -5.2053 41 1 -2.0470 7.4408 -10.3351 42 1 1.6351 3.9453 -2.1756 43 1 2.5871 4.2383 -3.6524 44 1 3.2853 2.1508 -2.4267 45 1 2.7312 1.8317 -4.0882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001726328673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:40 Heat of formation + Delta-G solvation = -63.179086 kcal Electronic energy + Delta-G solvation = -27092.602031 eV Core-core repulsion = 23235.705465 eV Total energy + Delta-G solvation = -3856.896565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.76599 -40.79914 -38.69401 -37.71674 -36.30205 -34.54291 -34.32767 -33.01624 -32.06959 -30.28221 -28.31359 -27.63476 -26.25952 -25.49067 -24.16650 -22.31025 -21.10099 -20.31496 -19.50508 -18.70081 -18.42748 -17.87580 -16.96528 -16.83820 -16.67308 -16.52119 -16.39989 -15.81444 -15.43569 -15.33025 -14.94913 -14.86694 -14.45059 -14.30455 -14.22139 -14.14846 -13.87804 -13.79094 -13.40781 -13.34525 -13.17589 -13.10921 -13.06464 -12.86610 -12.80398 -12.57503 -12.51961 -12.37636 -12.16006 -11.81743 -11.68130 -11.64426 -11.10570 -10.92382 -10.76060 -10.19357 -9.74297 -9.60520 -8.61838 -8.30865 -6.08108 1.31296 1.35959 1.41209 1.45171 1.51114 1.60288 1.67819 1.70515 2.07630 2.20108 2.32042 2.76926 3.03570 3.30004 3.33561 3.65376 3.75480 3.88295 3.95185 4.03702 4.12573 4.15651 4.34763 4.36033 4.44341 4.47425 4.53777 4.64354 4.70196 4.75342 4.80885 4.85670 4.90260 4.97570 4.97850 5.07708 5.19593 5.26742 5.35131 5.45848 5.46034 5.69989 6.21594 6.23653 6.38021 6.48463 6.97613 7.10935 7.25883 8.78034 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023043 B = 0.002196 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.841098 B =12745.868861 C =13051.107668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.010 4.010 3 H 0.182 0.818 4 C 0.242 3.758 5 N -0.476 5.476 6 C 0.524 3.476 7 O -0.581 6.581 8 N -0.592 5.592 9 C 0.078 3.922 10 C 0.131 3.869 11 C -0.142 4.142 12 C 0.101 3.899 13 N -0.606 5.606 14 C 0.533 3.467 15 O -0.570 6.570 16 C -0.123 4.123 17 S -0.159 6.159 18 C -0.541 4.541 19 H 0.085 0.915 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 0.996 3.004 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.256 1.256 26 C 0.112 3.888 27 C -0.140 4.140 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.137 0.863 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.270 0.730 42 H 0.104 0.896 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.805 -13.459 18.493 22.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 H 0.199 0.801 4 C -0.076 4.076 5 N -0.152 5.152 6 C 0.311 3.689 7 O -0.461 6.461 8 N -0.323 5.323 9 C -0.064 4.064 10 C 0.029 3.971 11 C -0.181 4.181 12 C -0.022 4.022 13 N -0.341 5.341 14 C 0.320 3.680 15 O -0.449 6.449 16 C -0.274 4.274 17 S 0.068 5.932 18 C -0.689 4.689 19 H 0.103 0.897 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.818 3.182 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.180 1.180 26 C -0.010 4.010 27 C -0.179 4.179 28 H 0.079 0.921 29 H 0.118 0.882 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.155 0.845 35 H 0.082 0.918 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.079 0.921 42 H 0.122 0.878 43 H 0.085 0.915 44 H 0.115 0.885 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.008 -13.608 19.372 23.864 hybrid contribution -1.430 -0.674 -1.097 1.924 sum 1.578 -14.282 18.275 23.248 Atomic orbital electron populations 1.22029 0.86850 1.04700 1.06953 1.19242 1.00768 1.01072 0.82308 0.80099 1.28834 0.92266 0.92588 0.93933 1.81226 1.09830 1.09792 1.14307 1.20437 0.78185 0.85258 0.84984 1.90781 1.45228 1.23477 1.86582 1.47825 1.62271 1.16608 1.05576 1.21710 1.01047 0.97242 0.86407 1.21632 0.93159 0.79723 1.02614 1.22311 0.98120 0.97095 1.00531 1.22080 0.89097 0.87222 1.03755 1.48129 1.19212 1.38362 1.28371 1.20088 0.87521 0.79859 0.80489 1.90690 1.44024 1.40565 1.69576 1.23379 0.99232 1.04414 1.00406 1.85650 1.25381 1.50077 1.32072 1.23188 1.02478 1.26385 1.16838 0.89713 1.26113 1.02379 0.94062 0.96729 1.70192 1.37838 1.23272 1.23556 0.84984 0.76862 0.79360 0.76979 1.19359 1.20713 1.17992 1.21673 0.85878 0.97059 0.96413 1.22282 0.99099 0.93808 1.02681 0.92051 0.88161 0.86796 0.91333 0.90181 0.91843 0.84541 0.91791 0.87052 0.87028 0.89221 0.87490 0.87127 0.92147 0.87806 0.91450 0.88474 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.06 8.80 71.98 0.63 0.57 16 2 C -0.01 -0.06 2.23 -13.35 -0.03 -0.09 16 3 H 0.18 -0.49 7.08 -2.39 -0.02 -0.51 16 4 C 0.24 3.87 13.91 89.44 1.24 5.12 16 5 N -0.48 -11.26 18.54 20.01 0.37 -10.89 16 6 C 0.52 6.66 6.91 87.66 0.61 7.27 16 7 O -0.58 -13.85 15.56 -3.02 -0.05 -13.90 16 8 N -0.59 -5.13 2.76 -822.45 -2.27 -7.40 16 9 C 0.08 0.86 9.44 127.77 1.21 2.07 16 10 C 0.13 0.55 1.63 45.02 0.07 0.62 16 11 C -0.14 -0.75 5.05 30.67 0.15 -0.59 16 12 C 0.10 0.89 6.34 86.36 0.55 1.44 16 13 N -0.61 -11.19 2.97 -818.92 -2.43 -13.62 16 14 C 0.53 17.11 7.72 87.66 0.68 17.79 16 15 O -0.57 -24.24 15.28 -3.04 -0.05 -24.29 16 16 C -0.12 -4.34 4.50 71.24 0.32 -4.01 16 17 S -0.16 -8.39 20.57 -56.49 -1.16 -9.55 16 18 C -0.54 -29.39 9.50 67.95 0.65 -28.75 16 19 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 20 C 0.01 0.65 5.49 84.86 0.47 1.11 16 21 N -0.91 -54.62 13.22 21.65 0.29 -54.34 16 22 Si 1.00 41.88 29.55 68.60 2.03 43.91 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 26 C 0.11 1.54 6.43 86.36 0.56 2.09 16 27 C -0.14 -1.20 5.39 30.67 0.17 -1.03 16 28 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.10 -0.21 8.14 -2.38 -0.02 -0.22 16 30 H 0.11 -0.53 5.69 -2.39 -0.01 -0.55 16 31 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.08 0.79 6.75 -2.38 -0.02 0.78 16 33 H 0.06 0.96 7.22 -2.39 -0.02 0.94 16 34 H 0.14 -0.37 4.45 -2.39 -0.01 -0.38 16 35 H 0.06 0.60 7.61 -2.39 -0.02 0.58 16 36 H 0.11 0.10 7.83 -2.38 -0.02 0.08 16 37 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.09 1.00 5.93 -2.39 -0.01 0.98 16 39 H 0.11 3.36 7.69 -2.40 -0.02 3.34 16 40 H 0.11 3.41 7.94 -2.40 -0.02 3.39 16 41 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 42 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.07 1.42 7.01 -2.39 -0.02 1.41 16 44 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 45 H 0.06 0.76 6.93 -2.38 -0.02 0.75 16 Total: -1.00 -90.47 380.23 5.00 -85.46 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: 1.01 Total: 1.02 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 7.26 Total: 3.60 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -4.05 Total: -86.26 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -0.09 Total: -38.19 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -90.47 5.00 -85.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001726328673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.283 kcal (2) G-P(sol) polarization free energy of solvation -90.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds