Wall clock time and date at job start Sat Apr 11 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35673 * 116.99919 * 2 1 4 4 N 1.32282 * 119.68318 * 0.02562 * 3 2 1 5 5 C 1.31931 * 121.64608 * 179.97438 * 4 3 2 6 6 C 1.38089 * 120.83789 * 359.97438 * 5 4 3 7 7 C 1.38785 * 119.28418 * 0.02562 * 6 5 4 8 8 C 1.38421 * 118.48774 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.44249 * 180.02562 * 8 7 6 10 10 N 1.46895 * 109.47131 * 260.00340 * 9 8 7 11 11 C 1.46908 * 110.99772 * 180.02562 * 10 9 8 12 12 H 1.08996 * 109.46833 * 34.99979 * 11 10 9 13 13 C 1.53004 * 109.46898 * 275.00271 * 11 10 9 14 14 C 1.52996 * 109.47273 * 155.00135 * 11 10 9 15 15 N 1.46499 * 109.47143 * 305.00613 * 14 11 10 16 16 C 1.34781 * 120.00243 * 180.02562 * 15 14 11 17 17 O 1.21281 * 119.99685 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00141 * 179.97438 * 16 15 14 19 19 S 1.80999 * 109.46856 * 179.97438 * 18 16 15 20 20 C 1.76205 * 100.00020 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99769 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00272 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00000 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 119.99852 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47046 * 90.00450 * 24 22 20 26 26 H 1.48504 * 109.47209 * 210.00108 * 24 22 20 27 27 H 1.48500 * 109.47450 * 330.00319 * 24 22 20 28 28 H 1.08997 * 109.47579 * 60.00114 * 1 2 3 29 29 H 1.09004 * 109.46543 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47130 * 299.99542 * 1 2 3 31 31 H 1.08001 * 119.58236 * 179.97438 * 5 4 3 32 32 H 1.07998 * 120.35997 * 180.02562 * 6 5 4 33 33 H 1.08004 * 120.75848 * 179.73389 * 7 6 5 34 34 H 1.08995 * 109.46769 * 20.01023 * 9 8 7 35 35 H 1.09005 * 109.46622 * 140.00677 * 9 8 7 36 36 H 1.00895 * 111.00692 * 303.95729 * 10 9 8 37 37 H 1.08999 * 109.46879 * 299.99965 * 13 11 10 38 38 H 1.09005 * 109.47067 * 60.00086 * 13 11 10 39 39 H 1.08998 * 109.46527 * 180.02562 * 13 11 10 40 40 H 1.09001 * 109.46795 * 64.99693 * 14 11 10 41 41 H 1.08999 * 109.47313 * 184.99676 * 14 11 10 42 42 H 0.97005 * 120.00182 * 359.97438 * 15 14 11 43 43 H 1.08998 * 109.47596 * 300.00150 * 18 16 15 44 44 H 1.09000 * 109.46548 * 60.00402 * 18 16 15 45 45 H 0.97001 * 120.00203 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3183 2.3143 0.0005 5 6 1.8766 3.5096 0.0010 6 6 3.2505 3.6492 0.0016 7 6 4.0482 2.5135 0.0011 8 6 3.4321 1.2740 0.0005 9 6 4.2558 0.0119 0.0005 10 7 4.3226 -0.5292 -1.3635 11 6 5.1191 -1.7630 -1.4019 12 1 4.9639 -2.3244 -0.4807 13 6 6.6012 -1.4091 -1.5401 14 6 4.6843 -2.6137 -2.5970 15 7 3.2406 -2.8522 -2.5271 16 6 2.6314 -3.5835 -3.4814 17 8 3.2784 -4.0438 -4.3982 18 6 1.1464 -3.8294 -3.4092 19 16 0.6321 -4.8356 -4.8231 20 6 -1.0944 -4.9643 -4.4952 21 1 -1.5153 -4.4874 -3.6224 22 6 -1.9135 -5.6785 -5.3586 23 7 -3.2033 -5.7742 -5.1139 24 14 -1.1857 -6.5027 -6.8686 25 1 -0.7642 -7.8842 -6.5237 26 1 -2.2061 -6.5511 -7.9464 27 1 -0.0082 -5.7281 -7.3363 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.2513 4.3901 0.0010 32 1 3.6993 4.6315 0.0024 33 1 5.1251 2.5950 -0.0028 34 1 5.2629 0.2354 0.3526 35 1 3.7948 -0.7228 0.6607 36 1 3.3982 -0.6842 -1.7368 37 1 6.7564 -0.8477 -2.4613 38 1 6.9110 -0.8031 -0.6886 39 1 7.1921 -2.3246 -1.5690 40 1 4.9214 -2.0884 -3.5222 41 1 5.2117 -3.5673 -2.5752 42 1 2.7231 -2.4844 -1.7937 43 1 0.9095 -4.3543 -2.4838 44 1 0.6188 -2.8758 -3.4313 45 1 -3.7757 -6.2736 -5.7171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731580380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:43 Heat of formation + Delta-G solvation = -65.359896 kcal Electronic energy + Delta-G solvation = -26696.848639 eV Core-core repulsion = 22839.857507 eV Total energy + Delta-G solvation = -3856.991132 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.68477 -40.80063 -38.82997 -38.49290 -35.52563 -34.68147 -33.93396 -32.38025 -31.23338 -30.46437 -28.25930 -27.90431 -27.07409 -26.08354 -23.92890 -22.85373 -21.86794 -21.64266 -19.92485 -19.29601 -18.12642 -18.03471 -17.58524 -17.19800 -17.10935 -16.87912 -16.59211 -16.22019 -15.81096 -15.78373 -15.37318 -15.18901 -14.96624 -14.74502 -14.40101 -14.13247 -14.05501 -13.72281 -13.39295 -13.36191 -13.32632 -13.13961 -13.01025 -12.90015 -12.72895 -12.56388 -12.33563 -12.17707 -11.89143 -11.79980 -11.17938 -11.06082 -10.76655 -10.57009 -10.55325 -10.21497 -9.55277 -9.31381 -9.00889 -8.52433 -6.23255 0.15226 0.36882 0.96879 1.30597 1.45797 1.51807 1.54392 2.14046 2.18547 2.24902 2.69388 2.74953 2.85897 3.24185 3.38946 3.67307 3.81494 3.89932 3.91844 4.11943 4.17058 4.20974 4.30299 4.36783 4.39667 4.40837 4.42949 4.57343 4.61332 4.66890 4.77558 4.82842 4.83062 4.97711 5.06400 5.14260 5.28876 5.31402 5.46574 5.55247 5.69957 5.98896 6.10548 6.21922 6.26368 6.33388 6.89804 6.92797 7.11031 8.59990 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012418 B = 0.002745 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.229765 B =10199.462912 C =11999.959015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.319 6.319 3 C 0.299 3.701 4 N -0.566 5.566 5 C 0.121 3.879 6 C -0.204 4.204 7 C -0.027 4.027 8 C -0.164 4.164 9 C 0.116 3.884 10 N -0.685 5.685 11 C 0.082 3.918 12 H 0.063 0.937 13 C -0.133 4.133 14 C 0.118 3.882 15 N -0.716 5.716 16 C 0.537 3.463 17 O -0.559 6.559 18 C -0.112 4.112 19 S -0.173 6.173 20 C -0.528 4.528 21 H 0.063 0.937 22 C 0.046 3.954 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.262 1.262 26 H -0.259 1.259 27 H -0.237 1.237 28 H 0.050 0.950 29 H 0.111 0.889 30 H 0.058 0.942 31 H 0.180 0.820 32 H 0.168 0.832 33 H 0.168 0.832 34 H 0.103 0.897 35 H 0.041 0.959 36 H 0.337 0.663 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.409 0.591 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.881 19.570 16.191 31.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.227 6.227 3 C 0.120 3.880 4 N -0.290 5.290 5 C -0.034 4.034 6 C -0.224 4.224 7 C -0.053 4.053 8 C -0.167 4.167 9 C -0.013 4.013 10 N -0.319 5.319 11 C -0.027 4.027 12 H 0.081 0.919 13 C -0.191 4.191 14 C -0.006 4.006 15 N -0.370 5.370 16 C 0.322 3.678 17 O -0.437 6.437 18 C -0.262 4.262 19 S 0.054 5.946 20 C -0.676 4.676 21 H 0.081 0.919 22 C -0.160 4.160 23 N -0.555 5.555 24 Si 0.735 3.265 25 H -0.186 1.186 26 H -0.183 1.183 27 H -0.161 1.161 28 H 0.069 0.931 29 H 0.130 0.870 30 H 0.077 0.923 31 H 0.197 0.803 32 H 0.186 0.814 33 H 0.185 0.815 34 H 0.121 0.879 35 H 0.060 0.940 36 H 0.156 0.844 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.245 0.755 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 19.504 18.788 14.455 30.698 hybrid contribution -1.774 -0.218 1.139 2.120 sum 17.730 18.570 15.594 30.040 Atomic orbital electron populations 1.22938 0.76441 1.04118 1.02005 1.86162 1.23603 1.24977 1.87912 1.20049 0.89728 0.84969 0.93249 1.67330 1.41891 0.99727 1.20020 1.22947 0.94336 0.93547 0.92546 1.22357 0.94296 1.01175 1.04554 1.21729 1.02050 0.90011 0.91517 1.19997 0.90287 0.97904 1.08538 1.20714 0.99529 0.91757 0.89298 1.60695 1.19970 1.29734 1.21471 1.21773 0.95999 0.88822 0.96143 0.91938 1.21713 0.92197 1.02158 1.03056 1.21678 0.79401 0.99934 0.99571 1.45810 1.09940 1.53979 1.27282 1.19927 0.88584 0.77585 0.81673 1.90691 1.66856 1.51054 1.35073 1.23259 0.95338 1.04618 1.03029 1.84706 1.07132 1.68893 1.33886 1.22450 0.92061 1.39060 1.13987 0.91927 1.25553 0.94534 0.95493 1.00379 1.70012 1.04878 1.41409 1.39195 0.85879 0.80248 0.80495 0.79832 1.18629 1.18335 1.16088 0.93112 0.87029 0.92282 0.80345 0.81439 0.81481 0.87895 0.94046 0.84376 0.92307 0.90869 0.91255 0.91780 0.90741 0.75450 0.86886 0.87130 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.38 113.37 1.18 1.96 16 2 O -0.32 -6.91 9.70 -89.90 -0.87 -7.78 16 3 C 0.30 6.37 7.47 84.78 0.63 7.01 16 4 N -0.57 -12.10 9.22 -308.94 -2.85 -14.95 16 5 C 0.12 1.82 11.18 84.64 0.95 2.77 16 6 C -0.20 -2.23 10.11 22.37 0.23 -2.01 16 7 C -0.03 -0.33 9.81 22.44 0.22 -0.11 16 8 C -0.16 -2.73 5.42 -19.67 -0.11 -2.84 16 9 C 0.12 1.63 5.30 85.56 0.45 2.08 16 10 N -0.69 -11.28 6.29 -495.57 -3.12 -14.40 16 11 C 0.08 1.22 2.81 44.91 0.13 1.35 16 12 H 0.06 0.84 7.80 -2.39 -0.02 0.82 16 13 C -0.13 -1.55 9.42 71.98 0.68 -0.87 16 14 C 0.12 2.50 5.31 86.38 0.46 2.96 16 15 N -0.72 -17.72 4.99 -463.07 -2.31 -20.03 16 16 C 0.54 18.85 7.85 87.65 0.69 19.54 16 17 O -0.56 -24.16 15.86 -3.03 -0.05 -24.21 16 18 C -0.11 -4.27 6.16 71.23 0.44 -3.83 16 19 S -0.17 -8.80 18.55 -56.49 -1.05 -9.85 16 20 C -0.53 -30.86 10.04 67.95 0.68 -30.18 16 21 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 22 C 0.05 2.70 5.50 84.86 0.47 3.17 16 23 N -0.92 -56.04 13.97 21.65 0.30 -55.74 16 24 Si 0.91 45.26 27.74 68.60 1.90 47.17 16 25 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 28 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 29 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.11 8.10 -2.38 -0.02 1.09 16 31 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 33 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 34 H 0.10 1.01 7.33 -2.39 -0.02 0.99 16 35 H 0.04 0.63 7.78 -2.38 -0.02 0.61 16 36 H 0.34 6.71 6.67 -89.70 -0.60 6.11 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.66 7.45 -2.38 -0.02 0.64 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.41 8.34 7.37 -92.70 -0.68 7.66 16 43 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 44 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 45 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -76.50 392.13 -1.26 -77.76 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -0.31 Total: 21.06 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 7.09 Total: 0.98 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -7.97 Total: -105.13 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.92 Total: -31.99 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.90 Total: 47.17 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.05 Total: -9.85 kcal Total: -76.50 -1.26 -77.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731580380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.402 kcal (2) G-P(sol) polarization free energy of solvation -76.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds