Wall clock time and date at job start Sat Apr 11 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46693 * 2 1 4 4 C 1.50699 * 109.47396 * 119.99670 * 2 1 3 5 5 O 1.21276 * 120.00140 * 106.29699 * 4 2 1 6 6 N 1.34783 * 119.99793 * 286.29476 * 4 2 1 7 7 C 1.46497 * 120.00104 * 5.00719 * 6 4 2 8 8 C 1.46504 * 119.99840 * 185.00773 * 6 4 2 9 9 C 1.52999 * 109.47192 * 270.00058 * 8 6 4 10 10 N 1.46896 * 109.47227 * 179.97438 * 9 8 6 11 11 C 1.46900 * 110.99909 * 179.97438 * 10 9 8 12 12 C 1.50705 * 109.47045 * 180.02562 * 11 10 9 13 13 O 1.21294 * 119.99605 * 0.02562 * 12 11 10 14 14 N 1.34770 * 120.00231 * 180.02562 * 12 11 10 15 15 C 1.37093 * 120.00178 * 180.02562 * 14 12 11 16 16 H 1.07994 * 120.00118 * 0.02562 * 15 14 12 17 17 C 1.38956 * 119.99846 * 180.02562 * 15 14 12 18 18 N 1.31410 * 120.00235 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99916 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47261 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47427 * 119.99616 * 19 17 15 22 22 H 1.48504 * 109.47159 * 239.99983 * 19 17 15 23 23 C 1.50695 * 109.47309 * 239.99724 * 2 1 3 24 24 C 1.33391 * 125.20242 * 119.71763 * 23 2 1 25 25 C 1.38424 * 114.92232 * 179.86049 * 24 23 2 26 26 C 1.33386 * 114.91606 * 0.42933 * 25 24 23 27 27 S 1.75879 * 125.20464 * 300.02125 * 23 2 1 28 28 H 1.08998 * 109.47796 * 50.19642 * 1 2 3 29 29 H 1.09010 * 109.46524 * 170.19745 * 1 2 3 30 30 H 1.09006 * 109.47131 * 290.18774 * 1 2 3 31 31 H 1.08998 * 109.47201 * 267.27611 * 7 6 4 32 32 H 1.09001 * 109.46867 * 27.27646 * 7 6 4 33 33 H 1.09004 * 109.46780 * 147.27009 * 7 6 4 34 34 H 1.09000 * 109.46890 * 29.99944 * 8 6 4 35 35 H 1.09002 * 109.47098 * 149.99962 * 8 6 4 36 36 H 1.09000 * 109.47251 * 300.00525 * 9 8 6 37 37 H 1.09002 * 109.47177 * 59.99953 * 9 8 6 38 38 H 1.00901 * 110.99704 * 56.05100 * 10 9 8 39 39 H 1.09000 * 109.47582 * 300.00431 * 11 10 9 40 40 H 1.08996 * 109.47236 * 60.00615 * 11 10 9 41 41 H 0.97005 * 119.99560 * 0.02562 * 14 12 11 42 42 H 0.97001 * 119.99890 * 180.02562 * 18 17 15 43 43 H 1.08004 * 122.54026 * 0.02562 * 24 23 2 44 44 H 1.07997 * 122.54305 * 180.19692 * 25 24 23 45 45 H 1.08003 * 125.20046 * 179.74931 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.5124 -1.8201 1.1365 6 7 1.9482 -0.1122 2.4354 7 6 1.2703 1.1798 2.5661 8 6 2.5348 -0.7542 3.6144 9 6 1.4917 -1.6576 4.2752 10 7 2.0801 -2.3018 5.4570 11 6 1.1047 -3.1785 6.1190 12 6 1.7427 -3.8197 7.3244 13 8 2.8962 -3.5705 7.6046 14 7 1.0316 -4.6700 8.0910 15 6 1.6118 -5.2530 9.1878 16 1 2.6385 -5.0305 9.4378 17 6 0.8786 -6.1301 9.9778 18 7 -0.3709 -6.4004 9.6739 19 14 1.6690 -6.9238 11.4727 20 1 3.0735 -6.4577 11.5963 21 1 0.9120 -6.5447 12.6928 22 1 1.6499 -8.4006 11.3172 23 6 2.0323 -0.7104 -1.2304 24 6 2.7981 -0.1631 -2.1756 25 6 3.1392 -1.0123 -3.2141 26 6 2.6430 -2.2466 -3.1169 27 16 1.6925 -2.3859 -1.6436 28 1 -0.3634 0.6578 -0.7894 29 1 -0.3633 -1.0128 -0.1750 30 1 -0.3634 0.3547 0.9646 31 1 1.9993 1.9842 2.4682 32 1 0.5167 1.2754 1.7844 33 1 0.7904 1.2411 3.5429 34 1 3.3945 -1.3525 3.3124 35 1 2.8548 0.0099 4.3228 36 1 0.6320 -1.0594 4.5771 37 1 1.1718 -2.4218 3.5668 38 1 2.4431 -1.6145 6.1004 39 1 0.2428 -2.5904 6.4342 40 1 0.7815 -3.9529 5.4235 41 1 0.1092 -4.8695 7.8666 42 1 -0.8828 -7.0124 10.2256 43 1 3.1292 0.8640 -2.1324 44 1 3.7570 -0.6982 -4.0424 45 1 2.8005 -3.0392 -3.8334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731956210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:48 Heat of formation + Delta-G solvation = -25.266538 kcal Electronic energy + Delta-G solvation = -26094.224321 eV Core-core repulsion = 22238.971767 eV Total energy + Delta-G solvation = -3855.252554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.48192 -38.30443 -37.98140 -36.39956 -35.16387 -34.18846 -33.73160 -31.21931 -29.91142 -28.77590 -27.20987 -26.20324 -24.91146 -24.10571 -23.04720 -22.02596 -19.75013 -19.60059 -19.14505 -17.86971 -17.46930 -17.16995 -16.29093 -16.09690 -15.69772 -15.49747 -15.48577 -14.60928 -14.53039 -14.29336 -14.00419 -13.69548 -13.54453 -13.31743 -13.12227 -13.07228 -13.02000 -12.80170 -12.55262 -12.37754 -12.18745 -12.03483 -11.82166 -11.69139 -11.48992 -11.48627 -11.11790 -10.96853 -10.79713 -10.32688 -10.20792 -9.98327 -9.50186 -8.98311 -8.86769 -8.50929 -8.43274 -8.05248 -7.94020 -6.39927 -3.80594 0.78324 1.49016 1.89513 2.37049 2.46819 2.75736 3.17889 3.28279 3.35897 3.92969 4.07734 4.13921 4.21323 4.44093 4.59488 4.68723 4.75785 4.86582 4.92125 5.00678 5.10279 5.18724 5.22143 5.23233 5.27493 5.29453 5.33957 5.37438 5.45158 5.68067 5.76324 5.85404 5.87304 5.95803 6.02243 6.06214 6.23351 6.25027 6.31645 7.08259 7.20058 7.57340 7.66571 7.93027 8.08540 8.63280 9.19848 9.56338 10.07810 10.77949 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020751 B = 0.001823 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.001922 B =15352.350438 C =15957.237459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.038 4.038 3 H 0.110 0.890 4 C 0.513 3.487 5 O -0.514 6.514 6 N -0.614 5.614 7 C 0.062 3.938 8 C 0.118 3.882 9 C 0.048 3.952 10 N -0.665 5.665 11 C 0.053 3.947 12 C 0.442 3.558 13 O -0.583 6.583 14 N -0.564 5.564 15 C -0.298 4.298 16 H 0.104 0.896 17 C 0.021 3.979 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.281 1.281 23 C -0.167 4.167 24 C -0.139 4.139 25 C -0.140 4.140 26 C -0.227 4.227 27 S 0.157 5.843 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.025 0.975 37 H 0.075 0.925 38 H 0.348 0.652 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 17.947 -24.879 30.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.062 4.062 3 H 0.128 0.872 4 C 0.299 3.701 5 O -0.388 6.388 6 N -0.348 5.348 7 C -0.080 4.080 8 C -0.004 4.004 9 C -0.083 4.083 10 N -0.298 5.298 11 C -0.079 4.079 12 C 0.227 3.773 13 O -0.467 6.467 14 N -0.201 5.201 15 C -0.428 4.428 16 H 0.122 0.878 17 C -0.181 4.181 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.285 4.285 24 C -0.170 4.170 25 C -0.170 4.170 26 C -0.364 4.364 27 S 0.422 5.578 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.043 0.957 37 H 0.093 0.907 38 H 0.167 0.833 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.504 15.680 -24.320 28.976 hybrid contribution -0.049 1.291 0.392 1.350 sum -1.554 16.971 -23.928 29.377 Atomic orbital electron populations 1.22047 0.91628 1.03800 1.03373 1.19791 0.97662 0.99675 0.89042 0.87226 1.20462 0.79084 0.86379 0.84181 1.90785 1.43770 1.18711 1.85527 1.47760 1.57533 1.21771 1.07765 1.22136 0.97573 0.84521 1.03813 1.21429 0.96870 0.96265 0.85883 1.22260 0.95370 0.96985 0.93667 1.59941 1.35782 1.24534 1.09543 1.21654 0.93204 0.96983 0.96102 1.19798 0.87623 0.84265 0.85625 1.90522 1.17609 1.65385 1.73154 1.41866 1.14075 1.39460 1.24695 1.19762 0.98863 1.22040 1.02110 0.87841 1.25273 0.95569 0.97579 0.99635 1.69623 1.08308 1.36372 1.40048 0.85792 0.79319 0.78669 0.80508 1.19205 1.20796 1.20743 1.23947 1.06345 0.98118 1.00123 1.20035 1.00726 1.01377 0.94856 1.20047 1.03294 0.93180 1.00526 1.25792 1.06542 1.01524 1.02493 1.84491 1.49247 1.09043 1.14996 0.90662 0.91476 0.90574 0.92315 0.89928 0.90713 0.88672 0.90427 0.95708 0.90685 0.83299 0.93932 0.89560 0.77460 0.91944 0.84633 0.84596 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.76 37.16 0.33 -0.61 16 2 C -0.04 -0.31 2.29 -92.93 -0.21 -0.52 16 3 H 0.11 0.62 7.67 -51.93 -0.40 0.22 16 4 C 0.51 5.80 6.90 -10.98 -0.08 5.72 16 5 O -0.51 -8.00 14.65 5.56 0.08 -7.92 16 6 N -0.61 -5.87 2.87 -181.57 -0.52 -6.39 16 7 C 0.06 0.34 9.85 59.85 0.59 0.93 16 8 C 0.12 1.37 5.64 -4.04 -0.02 1.34 16 9 C 0.05 0.64 6.01 -3.83 -0.02 0.61 16 10 N -0.67 -11.25 6.13 -115.06 -0.70 -11.96 16 11 C 0.05 0.98 6.17 -4.97 -0.03 0.95 16 12 C 0.44 10.73 7.82 -10.99 -0.09 10.65 16 13 O -0.58 -16.21 15.78 5.55 0.09 -16.12 16 14 N -0.56 -14.64 5.29 -10.96 -0.06 -14.70 16 15 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 16 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 18 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 19 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 C -0.17 -1.63 4.75 -36.00 -0.17 -1.80 16 24 C -0.14 -1.21 10.01 -41.21 -0.41 -1.63 16 25 C -0.14 -1.19 10.18 -41.21 -0.42 -1.61 16 26 C -0.23 -2.06 11.23 29.04 0.33 -1.73 16 27 S 0.16 1.67 21.60 -107.50 -2.32 -0.65 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.51 7.68 -51.92 -0.40 0.11 16 30 H 0.08 0.38 5.49 -51.93 -0.29 0.09 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.32 4.17 -51.93 -0.22 0.10 16 33 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 34 H 0.09 1.35 7.50 -51.93 -0.39 0.96 16 35 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 36 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.35 5.79 8.43 -39.29 -0.33 5.46 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 41 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 42 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 43 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 44 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.16 1.11 8.06 -52.48 -0.42 0.68 16 LS Contribution 388.52 15.07 5.85 5.85 Total: -1.00 -35.06 388.52 -8.83 -43.89 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -6.50 Total: 11.66 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -0.45 Total: 4.17 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.56 Total: -57.20 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.17 Total: -24.04 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.32 Total: -0.65 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.06 -8.83 -43.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731956210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.625 kcal (2) G-P(sol) polarization free energy of solvation -35.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds