Wall clock time and date at job start Sat Apr 11 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 5 5 N 1.46506 * 109.46916 * 64.99869 * 4 2 1 6 6 C 1.36935 * 119.99911 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00226 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99846 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00275 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00062 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46718 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47209 * 119.99613 * 10 8 6 13 13 H 1.48499 * 109.47208 * 240.00196 * 10 8 6 14 14 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 15 15 N 1.46499 * 109.46840 * 294.99527 * 14 2 1 16 16 C 1.34779 * 119.99872 * 180.02562 * 15 14 2 17 17 O 1.21684 * 119.99938 * 0.02562 * 16 15 14 18 18 C 1.46684 * 119.99726 * 180.02562 * 16 15 14 19 19 C 1.35654 * 126.13265 * 359.69394 * 18 16 15 20 20 N 1.30946 * 114.19253 * 179.82305 * 19 18 16 21 21 C 1.29430 * 117.35993 * 0.48027 * 20 19 18 22 22 C 1.50704 * 124.80237 * 179.76655 * 21 20 19 23 23 H 1.08997 * 109.87051 * 164.26217 * 22 21 20 24 24 C 1.54105 * 109.87831 * 285.26623 * 22 21 20 25 25 C 1.54808 * 104.18640 * 121.45813 * 24 22 21 26 26 C 1.54995 * 102.09613 * 20.87744 * 25 24 22 27 27 O 1.43742 * 109.88142 * 43.25060 * 22 21 20 28 28 S 1.70947 * 110.39211 * 359.73326 * 21 20 19 29 29 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 31 31 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 32 32 H 1.08993 * 109.47416 * 185.00006 * 4 2 1 33 33 H 1.09001 * 109.46966 * 305.00739 * 4 2 1 34 34 H 0.96999 * 119.99735 * 0.02562 * 5 4 2 35 35 H 0.96997 * 120.00544 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.47398 * 54.99853 * 14 2 1 37 37 H 1.09001 * 109.47194 * 175.00033 * 14 2 1 38 38 H 0.97000 * 120.00420 * 0.02562 * 15 14 2 39 39 H 1.07995 * 122.90722 * 359.97438 * 19 18 16 40 40 H 1.09005 * 110.48514 * 240.12957 * 24 22 21 41 41 H 1.08994 * 110.48926 * 2.78031 * 24 22 21 42 42 H 1.08999 * 110.91188 * 139.08068 * 25 24 22 43 43 H 1.09009 * 110.90525 * 262.64415 * 25 24 22 44 44 H 1.09003 * 110.61603 * 81.47823 * 26 25 24 45 45 H 1.09002 * 110.62166 * 204.48330 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 1.6524 0.0352 -2.4424 6 6 2.0019 -0.4205 -3.6855 7 1 2.5630 -1.3378 -3.7864 8 6 1.6351 0.2966 -4.8160 9 7 0.9510 1.4143 -4.6932 10 14 2.1125 -0.3246 -6.5118 11 1 2.8734 -1.5930 -6.3782 12 1 0.8863 -0.5646 -7.3144 13 1 2.9580 0.6900 -7.1908 14 6 2.0400 -0.7213 1.2493 15 7 1.6525 0.0354 2.4423 16 6 1.9964 -0.4130 3.6659 17 8 2.6292 -1.4461 3.7796 18 6 1.6079 0.3444 4.8605 19 6 0.9107 1.5079 4.8782 20 7 0.6882 1.9819 6.0784 21 6 1.1553 1.3083 7.0801 22 6 1.0023 1.7009 8.5270 23 1 1.2305 0.8495 9.1680 24 6 1.9484 2.8723 8.8550 25 6 1.0049 3.9943 9.3523 26 6 -0.2579 3.1969 9.7667 27 8 -0.3407 2.1511 8.7719 28 16 1.9697 -0.0902 6.5294 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1263 -0.7996 -1.2056 33 1 1.6053 -1.7199 -1.2951 34 1 1.1489 0.8593 -2.3518 35 1 0.6950 1.9156 -5.4831 36 1 1.6053 -1.7198 1.2952 37 1 3.1263 -0.7995 1.2057 38 1 1.1483 0.8592 2.3517 39 1 0.5666 1.9995 3.9803 40 1 2.6497 2.5880 9.6396 41 1 2.4837 3.1922 7.9611 42 1 1.4353 4.5136 10.2085 43 1 0.7768 4.6952 8.5491 44 1 -0.1323 2.7688 10.7612 45 1 -1.1426 3.8327 9.7302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732367778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:54 Heat of formation + Delta-G solvation = -30.391996 kcal Electronic energy + Delta-G solvation = -25749.855375 eV Core-core repulsion = 21894.380564 eV Total energy + Delta-G solvation = -3855.474810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.70493 -39.89067 -38.98326 -36.86841 -34.46431 -32.91696 -32.61862 -31.83138 -30.19539 -29.31238 -26.56689 -25.97165 -25.15934 -23.47614 -22.65804 -22.08889 -21.58136 -20.33084 -19.57324 -18.79293 -17.68300 -17.02019 -16.88535 -16.27375 -15.87343 -15.74522 -15.55215 -14.91007 -14.72064 -14.48582 -14.17580 -14.11707 -14.00485 -13.69527 -13.63324 -13.04635 -12.69427 -12.37995 -12.31308 -12.22319 -12.09975 -11.92020 -11.79379 -11.34825 -11.08507 -10.94407 -10.77124 -10.68230 -10.56425 -10.42156 -10.35567 -10.01801 -9.84983 -9.82378 -9.69282 -9.38449 -9.11601 -8.89337 -6.93495 -5.78159 -3.06645 -0.16271 0.70607 1.25853 2.09982 2.95645 3.06640 3.34547 3.43084 3.49068 3.51112 3.54316 4.04033 4.19495 4.28895 4.48988 4.51923 4.58107 4.69628 4.81195 4.85163 5.00542 5.06476 5.17024 5.17749 5.25694 5.34217 5.39966 5.54196 5.56696 5.60047 5.76427 5.92018 5.92567 6.06272 6.19240 6.25117 6.33216 6.39267 6.63021 6.74503 6.83799 7.23674 7.28364 7.70215 7.95818 8.40876 9.52347 10.09314 10.44052 11.44869 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027258 B = 0.001711 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.967302 B =16358.158802 C =16998.467509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.128 3.872 15 N -0.710 5.710 16 C 0.592 3.408 17 O -0.536 6.536 18 C -0.289 4.289 19 C 0.091 3.909 20 N -0.453 5.453 21 C 0.029 3.971 22 C 0.155 3.845 23 H 0.093 0.907 24 C -0.143 4.143 25 C -0.151 4.151 26 C 0.045 3.955 27 O -0.353 6.353 28 S 0.242 5.758 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.022 0.978 33 H 0.023 0.977 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.401 0.599 39 H 0.183 0.817 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.013 3.726 33.496 33.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.004 3.996 15 N -0.361 5.361 16 C 0.376 3.624 17 O -0.414 6.414 18 C -0.414 4.414 19 C -0.068 4.068 20 N -0.167 5.167 21 C -0.245 4.245 22 C 0.094 3.906 23 H 0.111 0.889 24 C -0.183 4.183 25 C -0.189 4.189 26 C -0.032 4.032 27 O -0.271 6.271 28 S 0.501 5.499 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.039 0.961 33 H 0.041 0.959 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.237 0.763 39 H 0.200 0.800 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.573 2.404 33.977 34.066 hybrid contribution -0.388 0.977 -1.859 2.136 sum 0.186 3.381 32.117 32.295 Atomic orbital electron populations 1.21808 0.94562 1.02065 1.01571 1.21570 0.96804 1.00576 0.94065 0.90395 1.20572 0.96650 0.94230 0.85304 1.42340 1.66944 1.27677 1.00574 1.19288 1.28622 1.05452 0.83637 0.91067 1.24738 1.01011 0.97409 0.97878 1.69661 1.43594 1.16627 1.28399 0.86109 0.77597 0.77839 0.84606 1.20529 1.21870 1.21883 1.21515 1.00444 0.95305 0.82314 1.45822 1.57087 1.27873 1.05335 1.16664 0.79600 0.84206 0.81940 1.90858 1.40202 1.23811 1.86564 1.25890 1.12882 1.03662 0.98944 1.22269 0.96214 0.92225 0.96051 1.66030 1.20347 1.32334 0.97949 1.27434 1.01018 0.96359 0.99734 1.21194 0.84890 0.97838 0.86705 0.88927 1.22995 0.98218 0.94293 1.02777 1.23118 0.95482 0.98177 1.02107 1.23669 0.99089 0.88692 0.91701 1.89058 1.23567 1.54394 1.60123 1.84009 1.48550 1.21135 0.96201 0.92710 0.93930 0.91010 0.96060 0.95914 0.78196 0.93569 0.90906 0.90910 0.76328 0.79982 0.89531 0.89791 0.89783 0.89902 0.91736 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 2 C -0.11 -1.66 2.46 -90.62 -0.22 -1.88 16 3 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.16 3.14 5.65 -4.04 -0.02 3.11 16 5 N -0.73 -18.14 5.33 -59.91 -0.32 -18.46 16 6 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 10 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 C 0.13 1.71 5.06 -4.04 -0.02 1.69 16 15 N -0.71 -8.29 5.27 -61.62 -0.32 -8.62 16 16 C 0.59 7.81 7.79 -12.85 -0.10 7.71 16 17 O -0.54 -8.88 16.97 5.20 0.09 -8.79 16 18 C -0.29 -3.22 6.48 -37.10 -0.24 -3.46 16 19 C 0.09 0.92 10.93 -18.85 -0.21 0.71 16 20 N -0.45 -4.96 10.48 -11.50 -0.12 -5.08 16 21 C 0.03 0.28 6.08 -13.29 -0.08 0.20 16 22 C 0.16 1.13 3.93 -27.30 -0.11 1.02 16 23 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 24 C -0.14 -0.76 6.63 -25.20 -0.17 -0.92 16 25 C -0.15 -0.71 7.16 -24.73 -0.18 -0.88 16 26 C 0.05 0.24 7.72 38.21 0.29 0.54 16 27 O -0.35 -3.21 11.17 -35.23 -0.39 -3.60 16 28 S 0.24 2.28 23.01 -107.50 -2.47 -0.19 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 31 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.38 9.91 6.85 -40.82 -0.28 9.63 16 35 H 0.25 7.38 8.31 -40.82 -0.34 7.05 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.40 3.75 6.36 -40.82 -0.26 3.49 16 39 H 0.18 1.38 7.15 -52.49 -0.38 1.00 16 40 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 0.53 7.69 -51.93 -0.40 0.13 16 42 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 44 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 386.74 15.07 5.83 5.83 Total: -1.00 -34.67 386.74 -9.66 -44.33 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -6.68 Total: 5.74 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -0.96 Total: -1.23 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.04 Total: -59.48 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.31 Total: -12.39 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.47 Total: -0.19 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.67 -9.66 -44.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732367778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.934 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds