Wall clock time and date at job start Sat Apr 11 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46828 * 2 1 4 4 C 1.52999 * 109.47251 * 120.00232 * 2 1 3 5 5 N 1.46500 * 109.46678 * 294.99877 * 4 2 1 6 6 C 1.36947 * 119.99647 * 179.97438 * 5 4 2 7 7 H 1.07998 * 119.99535 * 0.02562 * 6 5 4 8 8 C 1.38808 * 119.99711 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00202 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99813 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47209 * 59.99408 * 10 8 6 12 12 H 1.48496 * 109.47297 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46907 * 300.00063 * 10 8 6 14 14 C 1.53006 * 109.46811 * 240.00037 * 2 1 3 15 15 N 1.46504 * 109.46883 * 65.00265 * 14 2 1 16 16 C 1.34775 * 119.99531 * 179.97438 * 15 14 2 17 17 O 1.21689 * 120.00291 * 0.02562 * 16 15 14 18 18 C 1.46684 * 120.00029 * 179.97438 * 16 15 14 19 19 C 1.35668 * 126.12758 * 0.02700 * 18 16 15 20 20 N 1.30941 * 114.18759 * 179.97438 * 19 18 16 21 21 C 1.29422 * 117.36686 * 0.02562 * 20 19 18 22 22 C 1.50701 * 124.80446 * 180.02562 * 21 20 19 23 23 H 1.09001 * 110.33041 * 197.22756 * 22 21 20 24 24 C 1.54480 * 110.37755 * 74.97267 * 22 21 20 25 25 C 1.54510 * 104.06149 * 217.19187 * 24 22 21 26 26 C 1.54478 * 104.06338 * 359.97438 * 25 24 22 27 27 O 1.44426 * 104.80547 * 23.98122 * 26 25 24 28 28 S 1.70955 * 110.39093 * 359.72214 * 21 20 19 29 29 H 1.09009 * 109.47170 * 60.00031 * 1 2 3 30 30 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46911 * 299.99883 * 1 2 3 32 32 H 1.09003 * 109.47054 * 54.99952 * 4 2 1 33 33 H 1.08997 * 109.47369 * 175.00033 * 4 2 1 34 34 H 0.96991 * 120.00438 * 0.02562 * 5 4 2 35 35 H 0.97005 * 120.00289 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.47002 * 184.99763 * 14 2 1 37 37 H 1.08993 * 109.46955 * 305.00200 * 14 2 1 38 38 H 0.96992 * 119.99966 * 359.97438 * 15 14 2 39 39 H 1.08001 * 122.90142 * 359.97438 * 19 18 16 40 40 H 1.09003 * 110.50892 * 335.83489 * 24 22 21 41 41 H 1.08999 * 110.51402 * 98.40876 * 24 22 21 42 42 H 1.09003 * 110.51002 * 118.64608 * 25 24 22 43 43 H 1.08998 * 110.50929 * 241.21147 * 25 24 22 44 44 H 1.09004 * 110.36873 * 142.80922 * 26 25 24 45 45 H 1.09001 * 110.37074 * 265.03324 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 0.0354 2.4423 6 6 2.0011 -0.4209 3.6856 7 1 2.5621 -1.3382 3.7864 8 6 1.6334 0.2958 4.8161 9 7 0.9493 1.4134 4.6932 10 14 2.1096 -0.3261 6.5119 11 1 3.5887 -0.4156 6.6091 12 1 1.6021 0.6131 7.5441 13 1 1.5171 -1.6702 6.7306 14 6 2.0399 -0.7213 -1.2493 15 7 1.6524 0.0354 -2.4424 16 6 1.9963 -0.4130 -3.6659 17 8 2.6284 -1.4467 -3.7797 18 6 1.6078 0.3442 -4.8606 19 6 0.9059 1.5051 -4.8786 20 7 0.6883 1.9819 -6.0786 21 6 1.1550 1.3080 -7.0802 22 6 1.0030 1.7013 -8.5270 23 1 1.2033 0.8476 -9.1745 24 6 1.9529 2.8704 -8.8693 25 6 1.1362 3.7434 -9.8482 26 6 -0.2102 2.9981 -9.9821 27 8 -0.3228 2.2190 -8.7712 28 16 1.9755 -0.0868 -6.5291 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -1.7199 1.2951 33 1 3.1263 -0.7995 1.2056 34 1 1.1483 0.8590 2.3517 35 1 0.6927 1.9144 5.4832 36 1 3.1263 -0.7995 -1.2057 37 1 1.6053 -1.7197 -1.2952 38 1 1.1483 0.8591 -2.3518 39 1 0.5570 1.9937 -3.9809 40 1 2.2025 3.4352 -7.9710 41 1 2.8581 2.4990 -9.3496 42 1 0.9821 4.7398 -9.4339 43 1 1.6379 3.8058 -10.8138 44 1 -1.0326 3.7100 -10.0530 45 1 -0.1976 2.3458 -10.8552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732367786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:59 Heat of formation + Delta-G solvation = -29.946088 kcal Electronic energy + Delta-G solvation = -25697.884092 eV Core-core repulsion = 21842.428617 eV Total energy + Delta-G solvation = -3855.455474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.69380 -39.89495 -39.01863 -36.86833 -34.46390 -32.89944 -32.61495 -31.85958 -30.18809 -29.29396 -26.57272 -26.01545 -25.16874 -23.57207 -22.65883 -21.95494 -21.58999 -20.33503 -19.58191 -18.80139 -17.69600 -16.99439 -16.82298 -16.32341 -15.85034 -15.75857 -15.60348 -14.93154 -14.76222 -14.51372 -14.29013 -14.11583 -13.96289 -13.64140 -13.57136 -13.05262 -12.68876 -12.39356 -12.33218 -12.21622 -12.09542 -11.93183 -11.87912 -11.26215 -11.08244 -10.92468 -10.76535 -10.67212 -10.56278 -10.42615 -10.40081 -10.06893 -9.87615 -9.82863 -9.68208 -9.39621 -9.12161 -8.87876 -6.93205 -5.77441 -3.06052 -0.18018 0.68285 1.23869 2.08879 2.94937 3.05892 3.32164 3.44521 3.48826 3.49869 3.56288 4.07190 4.18386 4.30880 4.48260 4.51910 4.58498 4.66877 4.76483 4.83148 5.00176 5.02640 5.17039 5.17199 5.27623 5.34319 5.42120 5.49964 5.57044 5.58534 5.76488 5.91998 5.92636 6.06450 6.19361 6.19870 6.33196 6.39369 6.63247 6.74755 6.84019 7.22776 7.27849 7.69608 7.95239 8.41607 9.52875 10.09858 10.44616 11.45408 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028583 B = 0.001688 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.375212 B =16584.943395 C =17180.090339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.730 5.730 6 C -0.241 4.241 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.128 3.872 15 N -0.710 5.710 16 C 0.592 3.408 17 O -0.536 6.536 18 C -0.288 4.288 19 C 0.092 3.908 20 N -0.451 5.451 21 C 0.033 3.967 22 C 0.152 3.848 23 H 0.094 0.906 24 C -0.143 4.143 25 C -0.152 4.152 26 C 0.042 3.958 27 O -0.349 6.349 28 S 0.245 5.755 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.023 0.977 33 H 0.021 0.979 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.402 0.598 39 H 0.184 0.816 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.048 3.203 -33.728 33.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.372 4.372 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.004 3.996 15 N -0.361 5.361 16 C 0.376 3.624 17 O -0.414 6.414 18 C -0.413 4.413 19 C -0.067 4.067 20 N -0.165 5.165 21 C -0.242 4.242 22 C 0.091 3.909 23 H 0.111 0.889 24 C -0.183 4.183 25 C -0.190 4.190 26 C -0.035 4.035 27 O -0.268 6.268 28 S 0.504 5.496 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.237 0.763 39 H 0.201 0.799 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.633 1.954 -34.170 34.231 hybrid contribution -0.398 0.935 1.793 2.061 sum 0.236 2.889 -32.376 32.506 Atomic orbital electron populations 1.21809 0.94564 1.02063 1.01574 1.21571 0.96804 1.00582 0.94063 0.90388 1.20569 0.96647 0.94222 0.85308 1.42321 1.66957 1.27685 1.00544 1.19197 1.28831 1.05491 0.83660 0.91185 1.24732 1.00963 0.97392 0.97861 1.69643 1.43441 1.16579 1.28632 0.86251 0.78018 0.77709 0.84110 1.21269 1.21697 1.21257 1.21518 1.00450 0.95305 0.82307 1.45821 1.57060 1.27879 1.05333 1.16658 0.79612 0.84208 0.81935 1.90860 1.40240 1.23762 1.86562 1.25909 1.12670 1.03770 0.98962 1.22276 0.96245 0.92175 0.96038 1.66026 1.20395 1.32133 0.97967 1.27152 1.01292 0.96443 0.99321 1.21399 0.85169 0.97308 0.87031 0.88872 1.22999 0.98441 0.95942 1.00870 1.22931 0.95847 1.00271 0.99952 1.23481 0.98219 0.94158 0.87597 1.89288 1.26150 1.68126 1.43202 1.84000 1.48130 1.21280 0.96215 0.93928 0.92712 0.91007 0.95935 0.96071 0.78192 0.93468 0.90901 0.90898 0.76315 0.79917 0.89728 0.89617 0.90147 0.90084 0.88492 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 2 C -0.11 -1.66 2.46 -90.62 -0.22 -1.88 16 3 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.16 3.14 5.65 -4.04 -0.02 3.12 16 5 N -0.73 -18.13 5.33 -59.91 -0.32 -18.45 16 6 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 7 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 8 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 9 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 10 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.13 1.71 5.06 -4.04 -0.02 1.69 16 15 N -0.71 -8.26 5.27 -61.61 -0.32 -8.58 16 16 C 0.59 7.77 7.79 -12.85 -0.10 7.67 16 17 O -0.54 -8.83 16.97 5.20 0.09 -8.74 16 18 C -0.29 -3.19 6.48 -37.09 -0.24 -3.43 16 19 C 0.09 0.92 10.93 -18.85 -0.21 0.72 16 20 N -0.45 -5.00 10.47 -11.50 -0.12 -5.12 16 21 C 0.03 0.31 6.24 -13.29 -0.08 0.23 16 22 C 0.15 1.11 3.80 -27.11 -0.10 1.01 16 23 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 24 C -0.14 -0.79 6.62 -25.16 -0.17 -0.95 16 25 C -0.15 -0.66 7.09 -25.16 -0.18 -0.83 16 26 C 0.04 0.22 7.63 37.93 0.29 0.51 16 27 O -0.35 -3.21 11.30 -35.23 -0.40 -3.61 16 28 S 0.25 2.28 23.01 -107.50 -2.47 -0.20 16 29 H 0.04 0.49 7.18 -51.92 -0.37 0.12 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.38 9.91 6.85 -40.82 -0.28 9.63 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.40 3.74 6.36 -40.82 -0.26 3.48 16 39 H 0.18 1.38 7.15 -52.49 -0.38 1.00 16 40 H 0.08 0.59 7.87 -51.93 -0.41 0.18 16 41 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 386.90 15.07 5.83 5.83 Total: -1.00 -34.65 386.90 -9.67 -44.33 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.69 Total: 5.72 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -0.97 Total: -1.25 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.04 Total: -59.47 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.31 Total: -12.35 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.47 Total: -0.20 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.65 -9.67 -44.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732367786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.382 kcal (2) G-P(sol) polarization free energy of solvation -34.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds