Wall clock time and date at job start Sat Apr 11 2020 05:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47414 * 2 1 4 4 C 1.53003 * 109.47323 * 119.99511 * 2 1 3 5 5 N 1.46498 * 109.47058 * 295.00318 * 4 2 1 6 6 C 1.36940 * 119.99886 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00035 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99707 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00321 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99756 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47010 * 90.00094 * 10 8 6 12 12 H 1.48495 * 109.46780 * 209.99855 * 10 8 6 13 13 H 1.48504 * 109.46751 * 329.99973 * 10 8 6 14 14 C 1.52996 * 109.47350 * 239.99337 * 2 1 3 15 15 N 1.46504 * 109.46681 * 64.99926 * 14 2 1 16 16 C 1.34777 * 119.99854 * 179.97438 * 15 14 2 17 17 O 1.21693 * 120.00018 * 0.02562 * 16 15 14 18 18 C 1.46686 * 120.00342 * 180.27605 * 16 15 14 19 19 C 1.35661 * 126.12505 * 359.42024 * 18 16 15 20 20 N 1.30945 * 114.19156 * 179.78308 * 19 18 16 21 21 C 1.29424 * 117.35975 * 0.52450 * 20 19 18 22 22 C 1.50700 * 124.80319 * 179.74142 * 21 20 19 23 23 H 1.09009 * 109.86752 * 164.25807 * 22 21 20 24 24 C 1.54094 * 109.88326 * 285.26650 * 22 21 20 25 25 C 1.54805 * 104.18851 * 121.45317 * 24 22 21 26 26 C 1.54994 * 102.09337 * 20.88573 * 25 24 22 27 27 O 1.43747 * 109.87991 * 43.25748 * 22 21 20 28 28 S 1.70951 * 110.39244 * 359.70908 * 21 20 19 29 29 H 1.09008 * 109.46927 * 300.00772 * 1 2 3 30 30 H 1.09001 * 109.46802 * 60.00108 * 1 2 3 31 31 H 1.09000 * 109.47390 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46978 * 54.99581 * 4 2 1 33 33 H 1.08997 * 109.47553 * 174.99688 * 4 2 1 34 34 H 0.97003 * 120.00291 * 359.97438 * 5 4 2 35 35 H 0.97001 * 119.99934 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.47328 * 305.00259 * 14 2 1 37 37 H 1.08997 * 109.47540 * 185.00005 * 14 2 1 38 38 H 0.97000 * 120.00410 * 0.02562 * 15 14 2 39 39 H 1.08002 * 122.90803 * 359.97438 * 19 18 16 40 40 H 1.09003 * 110.49293 * 240.13070 * 24 22 21 41 41 H 1.08998 * 110.48537 * 2.77378 * 24 22 21 42 42 H 1.09001 * 110.91000 * 139.08347 * 25 24 22 43 43 H 1.09002 * 110.90961 * 262.64786 * 25 24 22 44 44 H 1.08996 * 110.62195 * 81.48057 * 26 25 24 45 45 H 1.09005 * 110.61355 * 204.47900 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6524 0.0355 2.4424 6 6 2.0011 -0.4206 3.6856 7 1 2.5614 -1.3382 3.7866 8 6 1.6342 0.2967 4.8161 9 7 0.9517 1.4154 4.6930 10 14 2.1092 -0.3258 6.5121 11 1 3.4322 0.2319 6.8915 12 1 1.0886 0.1047 7.5011 13 1 2.1845 -1.8088 6.4918 14 6 2.0400 -0.7214 -1.2491 15 7 1.6524 0.0352 -2.4423 16 6 1.9964 -0.4133 -3.6658 17 8 2.6286 -1.4469 -3.7794 18 6 1.6136 0.3472 -4.8603 19 6 0.9073 1.5053 -4.8787 20 7 0.6998 1.9883 -6.0780 21 6 1.1707 1.3169 -7.0792 22 6 1.0251 1.7138 -8.5257 23 1 1.7306 1.1510 -9.1372 24 6 -0.4148 1.4409 -9.0017 25 6 -0.9275 2.8237 -9.4723 26 6 0.3950 3.5909 -9.7266 27 8 1.2671 3.1232 -8.6726 28 16 1.9821 -0.0834 -6.5286 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6053 -1.7197 1.2953 33 1 3.1263 -0.7994 1.2057 34 1 1.1488 0.8596 2.3517 35 1 0.6958 1.9168 5.4829 36 1 1.6054 -1.7199 -1.2950 37 1 3.1263 -0.7996 -1.2055 38 1 1.1488 0.8593 -2.3518 39 1 0.5499 1.9889 -3.9816 40 1 -0.4151 0.7319 -9.8296 41 1 -1.0244 1.0679 -8.1787 42 1 -1.5067 2.7318 -10.3911 43 1 -1.5145 3.3073 -8.6915 44 1 0.8055 3.3352 -10.7035 45 1 0.2366 4.6663 -9.6453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732367787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:01 Heat of formation + Delta-G solvation = -30.304816 kcal Electronic energy + Delta-G solvation = -25750.796261 eV Core-core repulsion = 21895.325231 eV Total energy + Delta-G solvation = -3855.471030 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70484 -39.88963 -38.98267 -36.86791 -34.46196 -32.91648 -32.61843 -31.83102 -30.19404 -29.31239 -26.56917 -25.97186 -25.15719 -23.47594 -22.65505 -22.08953 -21.58050 -20.33091 -19.57203 -18.79352 -17.68208 -17.01837 -16.88185 -16.27517 -15.90080 -15.67562 -15.59934 -14.92139 -14.67681 -14.50202 -14.18644 -14.12477 -14.01032 -13.67519 -13.63032 -13.06435 -12.67963 -12.38127 -12.31425 -12.23031 -12.09750 -11.92013 -11.79405 -11.34999 -11.08516 -10.93308 -10.77422 -10.67274 -10.56267 -10.42226 -10.36243 -10.04407 -9.85100 -9.82280 -9.68624 -9.38387 -9.11565 -8.88473 -6.93295 -5.77781 -3.06298 -0.16255 0.70648 1.25905 2.10025 2.95531 3.06777 3.34665 3.43745 3.49029 3.50566 3.54264 4.03901 4.19378 4.28842 4.48936 4.51959 4.58363 4.69600 4.81187 4.85146 5.00556 5.06365 5.17039 5.17702 5.25530 5.34082 5.39686 5.54029 5.56884 5.60052 5.76171 5.91749 5.92663 6.06260 6.19058 6.25175 6.33047 6.39089 6.62782 6.74601 6.83845 7.23720 7.28406 7.69962 7.95849 8.41271 9.52642 10.09618 10.44335 11.45152 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027656 B = 0.001710 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.188672 B =16369.832161 C =17017.681427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.128 3.872 15 N -0.710 5.710 16 C 0.592 3.408 17 O -0.536 6.536 18 C -0.289 4.289 19 C 0.091 3.909 20 N -0.453 5.453 21 C 0.029 3.971 22 C 0.155 3.845 23 H 0.093 0.907 24 C -0.143 4.143 25 C -0.151 4.151 26 C 0.045 3.955 27 O -0.353 6.353 28 S 0.243 5.757 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.023 0.977 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.401 0.599 39 H 0.183 0.817 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.576 1.600 -33.687 33.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.004 3.996 15 N -0.361 5.361 16 C 0.376 3.624 17 O -0.414 6.414 18 C -0.414 4.414 19 C -0.068 4.068 20 N -0.167 5.167 21 C -0.245 4.245 22 C 0.094 3.906 23 H 0.111 0.889 24 C -0.183 4.183 25 C -0.189 4.189 26 C -0.032 4.032 27 O -0.271 6.271 28 S 0.501 5.499 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.237 0.763 39 H 0.200 0.800 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.628 0.509 -34.140 34.245 hybrid contribution -0.642 0.807 1.839 2.109 sum -3.269 1.315 -32.301 32.492 Atomic orbital electron populations 1.21805 0.94579 1.02038 1.01557 1.21570 0.96791 1.00603 0.94071 0.90379 1.20570 0.96659 0.94218 0.85304 1.42331 1.66960 1.27670 1.00560 1.19242 1.28744 1.05451 0.83646 0.91128 1.24738 1.00988 0.97403 0.97871 1.69655 1.43562 1.16552 1.28514 0.86177 0.77585 0.78023 0.84336 1.21721 1.21780 1.20748 1.21513 1.00466 0.95283 0.82309 1.45822 1.57110 1.27846 1.05333 1.16666 0.79595 0.84208 0.81944 1.90860 1.40165 1.23853 1.86565 1.25891 1.12896 1.03683 0.98909 1.22272 0.96400 0.92020 0.96073 1.66027 1.21030 1.31590 0.98008 1.27432 1.00410 0.96951 0.99754 1.21195 0.97705 0.84987 0.86747 0.88927 1.22991 0.94329 0.98810 1.02142 1.23117 0.98301 0.94996 1.02467 1.23669 0.88608 1.00113 0.90766 1.89062 1.61825 1.20183 1.56063 1.84008 1.47843 1.21846 0.96192 0.91016 0.93945 0.92721 0.95929 0.96062 0.78193 0.93522 0.90909 0.90908 0.76327 0.79981 0.89534 0.89802 0.89787 0.89905 0.91733 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.94 37.16 0.33 -1.71 16 2 C -0.11 -1.67 2.46 -90.62 -0.22 -1.89 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.16 3.14 5.65 -4.04 -0.02 3.12 16 5 N -0.73 -18.15 5.33 -59.91 -0.32 -18.47 16 6 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 10 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 14 C 0.13 1.71 5.06 -4.04 -0.02 1.69 16 15 N -0.71 -8.30 5.27 -61.62 -0.32 -8.62 16 16 C 0.59 7.81 7.79 -12.85 -0.10 7.71 16 17 O -0.54 -8.88 16.97 5.20 0.09 -8.79 16 18 C -0.29 -3.22 6.48 -37.09 -0.24 -3.46 16 19 C 0.09 0.92 10.93 -18.85 -0.21 0.71 16 20 N -0.45 -4.96 10.48 -11.50 -0.12 -5.08 16 21 C 0.03 0.28 6.08 -13.29 -0.08 0.20 16 22 C 0.16 1.13 3.93 -27.31 -0.11 1.02 16 23 H 0.09 0.48 8.14 -51.92 -0.42 0.05 16 24 C -0.14 -0.75 6.63 -25.21 -0.17 -0.92 16 25 C -0.15 -0.70 7.16 -24.73 -0.18 -0.88 16 26 C 0.05 0.24 7.72 38.21 0.29 0.54 16 27 O -0.35 -3.22 11.17 -35.23 -0.39 -3.61 16 28 S 0.24 2.28 23.01 -107.50 -2.47 -0.19 16 29 H 0.07 1.21 7.18 -51.92 -0.37 0.84 16 30 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.38 9.91 6.85 -40.82 -0.28 9.63 16 35 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.40 3.75 6.36 -40.82 -0.26 3.49 16 39 H 0.18 1.38 7.15 -52.49 -0.38 1.00 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 0.52 7.69 -51.93 -0.40 0.12 16 42 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 386.74 15.07 5.83 5.83 Total: -1.00 -34.67 386.74 -9.66 -44.33 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.68 Total: 5.75 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -0.96 Total: -1.21 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.04 Total: -59.51 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.31 Total: -12.40 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.47 Total: -0.19 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.67 -9.66 -44.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732367787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.021 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds