Wall clock time and date at job start Sat Apr 11 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46898 * 2 1 4 4 C 1.53004 * 109.47522 * 240.00305 * 2 1 3 5 5 N 1.46895 * 109.47035 * 184.99817 * 4 2 1 6 6 C 1.46906 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47109 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99996 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99978 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99848 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00405 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99358 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99517 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00588 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.47149 * 89.99828 * 14 12 10 16 16 H 1.48498 * 109.47388 * 209.99797 * 14 12 10 17 17 H 1.48501 * 109.46930 * 330.00192 * 14 12 10 18 18 N 1.46503 * 109.47499 * 119.99933 * 2 1 3 19 19 C 1.46506 * 119.99649 * 60.00148 * 18 2 1 20 20 C 1.34777 * 120.00185 * 240.00699 * 18 2 1 21 21 O 1.21274 * 120.00112 * 359.97438 * 20 18 2 22 22 C 1.50700 * 119.99615 * 179.97438 * 20 18 2 23 23 C 1.50706 * 109.46953 * 179.97438 * 22 20 18 24 24 C 1.33384 * 125.20469 * 89.99452 * 23 22 20 25 25 C 1.38420 * 114.92047 * 179.97438 * 24 23 22 26 26 C 1.33386 * 114.92380 * 0.02562 * 25 24 23 27 27 S 1.75883 * 125.20011 * 269.69732 * 23 22 20 28 28 H 1.09003 * 109.46643 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47549 * 299.99706 * 1 2 3 30 30 H 1.08994 * 109.47227 * 60.00484 * 1 2 3 31 31 H 1.08996 * 109.46863 * 64.99659 * 4 2 1 32 32 H 1.09002 * 109.46661 * 304.99836 * 4 2 1 33 33 H 1.00902 * 111.00273 * 303.95364 * 5 4 2 34 34 H 1.08992 * 109.47459 * 299.99826 * 6 5 4 35 35 H 1.09004 * 109.47040 * 59.99976 * 6 5 4 36 36 H 0.97002 * 119.99767 * 359.97438 * 9 7 6 37 37 H 0.96997 * 120.00211 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.46574 * 90.00048 * 19 18 2 39 39 H 1.08998 * 109.46996 * 210.00432 * 19 18 2 40 40 H 1.09001 * 109.46821 * 330.00269 * 19 18 2 41 41 H 1.09001 * 109.47030 * 299.99252 * 22 20 18 42 42 H 1.08995 * 109.47333 * 59.99635 * 22 20 18 43 43 H 1.08002 * 122.53782 * 359.95903 * 24 23 22 44 44 H 1.08003 * 122.53962 * 180.02562 * 25 24 23 45 45 H 1.07999 * 125.20630 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5041 -0.8265 -1.1904 6 6 4.0304 -1.5157 -2.3762 7 6 5.5318 -1.6041 -2.2807 8 8 6.1068 -1.1391 -1.3192 9 7 6.2356 -2.1997 -3.2637 10 6 7.6015 -2.2806 -3.1766 11 1 8.1135 -1.8666 -2.3205 12 6 8.3270 -2.8952 -4.1899 13 7 9.6362 -2.9722 -4.1066 14 14 7.4415 -3.6118 -5.6702 15 1 7.3212 -2.5738 -6.7254 16 1 8.2125 -4.7663 -6.1972 17 1 6.0866 -4.0649 -5.2649 18 7 2.0184 -0.6906 1.1962 19 6 1.6645 -2.0932 1.4280 20 6 2.7932 -0.0356 2.0834 21 8 3.0864 1.1254 1.8913 22 6 3.2950 -0.7459 3.3141 23 6 4.1328 0.2011 4.1341 24 6 3.6705 0.9997 5.0973 25 6 4.6295 1.7837 5.7153 26 6 5.8704 1.6221 5.2536 27 16 5.8708 0.4170 3.9725 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.7517 -0.1582 -2.1369 32 1 1.6055 -1.7198 -1.2952 33 1 3.9280 0.0827 -1.0823 34 1 3.6097 -2.5197 -2.4295 35 1 3.7558 -0.9586 -3.2720 36 1 5.7757 -2.5718 -4.0324 37 1 10.1428 -3.4009 -4.8141 38 1 2.4159 -2.7376 0.9716 39 1 1.6238 -2.2853 2.5001 40 1 0.6905 -2.3002 0.9846 41 1 2.4470 -1.0881 3.9073 42 1 3.9004 -1.6025 3.0177 43 1 2.6270 1.0324 5.3739 44 1 4.3910 2.4739 6.5110 45 1 6.7424 2.1472 5.6147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732449847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:03 Heat of formation + Delta-G solvation = -23.844082 kcal Electronic energy + Delta-G solvation = -27023.974211 eV Core-core repulsion = 23168.783339 eV Total energy + Delta-G solvation = -3855.190872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.10155 -38.46423 -37.77783 -36.70376 -34.72978 -33.83451 -32.64774 -31.64149 -31.17044 -27.75527 -27.19373 -26.88714 -24.98397 -23.56485 -23.01833 -21.45539 -19.51311 -19.27212 -19.00369 -18.26975 -17.40269 -17.01828 -16.40265 -15.84588 -15.70096 -15.33945 -15.17970 -14.83049 -14.30836 -14.11559 -13.76817 -13.62159 -13.26772 -13.22623 -12.89400 -12.74198 -12.72310 -12.65111 -12.47769 -12.28633 -12.20521 -12.14677 -12.03931 -11.65624 -11.62791 -11.47975 -11.15276 -10.93597 -10.59051 -10.57199 -9.96034 -9.75345 -9.55326 -8.67175 -8.61604 -8.49194 -8.33979 -8.17312 -8.09953 -6.29268 -3.80516 1.04053 1.73707 2.12192 2.68677 2.77909 3.02711 3.06955 3.07657 3.15195 3.76906 4.06987 4.11864 4.54232 4.64371 4.83762 4.86588 4.92980 5.02388 5.06570 5.10527 5.16051 5.23643 5.25445 5.38527 5.41317 5.47513 5.50399 5.56843 5.59591 5.63783 5.74464 5.81944 5.85042 5.93851 5.97998 6.11354 6.29969 6.50719 6.53079 7.11777 7.40360 7.58864 7.60851 8.16884 8.27941 8.62082 8.97324 9.44519 9.85589 10.84023 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010849 B = 0.003019 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.343202 B = 9271.369238 C =11382.598803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.100 0.900 4 C 0.048 3.952 5 N -0.663 5.663 6 C 0.049 3.951 7 C 0.450 3.550 8 O -0.560 6.560 9 N -0.592 5.592 10 C -0.304 4.304 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.882 5.882 14 Si 0.880 3.120 15 H -0.272 1.272 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.595 5.595 19 C 0.078 3.922 20 C 0.524 3.476 21 O -0.531 6.531 22 C -0.069 4.069 23 C -0.159 4.159 24 C -0.135 4.135 25 C -0.138 4.138 26 C -0.223 4.223 27 S 0.137 5.863 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.353 0.647 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.370 0.630 37 H 0.273 0.727 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.634 2.757 13.373 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 H 0.118 0.882 4 C -0.082 4.082 5 N -0.296 5.296 6 C -0.084 4.084 7 C 0.235 3.765 8 O -0.442 6.442 9 N -0.232 5.232 10 C -0.432 4.432 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.707 3.293 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 N -0.328 5.328 19 C -0.066 4.066 20 C 0.312 3.688 21 O -0.406 6.406 22 C -0.110 4.110 23 C -0.277 4.277 24 C -0.166 4.166 25 C -0.169 4.169 26 C -0.359 4.359 27 S 0.402 5.598 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.173 0.827 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.202 0.798 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.151 0.849 44 H 0.153 0.847 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -18.726 2.431 13.298 23.095 hybrid contribution -1.693 0.501 -1.205 2.138 sum -20.419 2.932 12.093 23.911 Atomic orbital electron populations 1.22089 0.94725 1.02327 1.02546 1.21058 0.93400 0.98073 0.84041 0.88212 1.22356 0.89538 1.00448 0.95878 1.60000 1.03178 1.27089 1.39289 1.21699 0.95045 0.99891 0.91752 1.19724 0.87958 0.84075 0.84704 1.90589 1.70956 1.50187 1.32427 1.42210 1.07836 1.53167 1.19990 1.19434 0.79532 1.35873 1.08395 0.86307 1.25035 0.95437 0.97705 0.98028 1.69623 1.05057 1.43548 1.34005 0.86669 0.79567 0.79773 0.83342 1.19709 1.20205 1.19529 1.47506 1.50988 1.12190 1.22146 1.21769 1.01223 0.82113 1.01466 1.20287 0.77688 0.86899 0.83971 1.90703 1.56555 1.16985 1.76401 1.20171 0.99446 0.97433 0.93965 1.23859 0.97354 1.04453 1.02007 1.19961 1.00561 0.97959 0.98097 1.20042 0.92145 1.02095 1.02571 1.25672 1.01696 1.05552 1.02955 1.84758 1.03454 1.36978 1.34623 0.92132 0.92067 0.91404 0.94536 0.90886 0.82750 0.89699 0.93957 0.79775 0.91653 0.91648 0.91454 0.91282 0.87540 0.87513 0.84908 0.84726 0.82141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.17 37.16 0.34 -0.87 16 2 C 0.14 1.49 2.88 -67.93 -0.20 1.29 16 3 H 0.10 1.32 6.90 -51.93 -0.36 0.96 16 4 C 0.05 0.54 4.98 -3.82 -0.02 0.52 16 5 N -0.66 -10.38 5.85 -115.06 -0.67 -11.05 16 6 C 0.05 0.81 6.17 -4.97 -0.03 0.78 16 7 C 0.45 10.33 7.82 -10.98 -0.09 10.25 16 8 O -0.56 -15.36 15.78 5.54 0.09 -15.27 16 9 N -0.59 -14.25 5.09 -10.96 -0.06 -14.30 16 10 C -0.30 -8.69 10.16 -14.93 -0.15 -8.84 16 11 H 0.12 3.90 7.39 -52.49 -0.39 3.52 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -26.02 13.96 55.50 0.77 -25.24 16 14 Si 0.88 19.48 27.74 -169.99 -4.71 14.77 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.27 -5.42 6.52 56.52 0.37 -5.06 16 18 N -0.59 -6.66 2.49 -173.93 -0.43 -7.09 16 19 C 0.08 0.63 9.40 59.85 0.56 1.19 16 20 C 0.52 7.20 7.67 -10.98 -0.08 7.12 16 21 O -0.53 -9.38 15.36 5.56 0.09 -9.29 16 22 C -0.07 -0.77 4.75 -29.03 -0.14 -0.90 16 23 C -0.16 -2.06 5.00 -36.00 -0.18 -2.24 16 24 C -0.14 -1.59 10.05 -41.21 -0.41 -2.01 16 25 C -0.14 -1.55 10.18 -41.21 -0.42 -1.97 16 26 C -0.22 -2.64 11.23 29.04 0.33 -2.32 16 27 S 0.14 1.93 23.33 -107.50 -2.51 -0.58 16 28 H 0.06 0.39 6.66 -51.93 -0.35 0.04 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 33 H 0.35 6.32 8.43 -39.29 -0.33 5.98 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.37 7.79 5.76 -40.82 -0.24 7.55 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.40 6.44 -51.93 -0.33 0.07 16 40 H 0.07 0.43 6.43 -51.93 -0.33 0.09 16 41 H 0.11 0.83 7.40 -51.93 -0.38 0.44 16 42 H 0.11 1.17 8.11 -51.93 -0.42 0.75 16 43 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 44 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 45 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 387.97 15.07 5.85 5.85 Total: -1.00 -35.99 387.97 -8.69 -44.68 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -6.51 Total: 14.50 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -0.59 Total: 3.04 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.39 Total: -57.69 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: 0.17 Total: -24.57 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.77 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.51 Total: -0.58 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.99 -8.69 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732449847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.834 kcal (2) G-P(sol) polarization free energy of solvation -35.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds