Wall clock time and date at job start Sat Apr 11 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47040 * 2 1 4 4 C 1.52997 * 109.47206 * 120.00470 * 2 1 3 5 5 N 1.46904 * 109.47053 * 175.00067 * 4 2 1 6 6 C 1.46903 * 110.99696 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.46617 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00416 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99857 * 179.97438 * 7 6 5 10 10 C 1.37092 * 120.00092 * 180.02562 * 9 7 6 11 11 H 1.08009 * 120.00131 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00024 * 179.97438 * 10 9 7 13 13 N 1.31410 * 120.00074 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00064 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47366 * 89.99971 * 14 12 10 16 16 H 1.48498 * 109.46922 * 210.00194 * 14 12 10 17 17 H 1.48499 * 109.47020 * 330.00014 * 14 12 10 18 18 N 1.46506 * 109.46656 * 240.00112 * 2 1 3 19 19 C 1.46498 * 120.00239 * 299.72110 * 18 2 1 20 20 C 1.34777 * 119.99873 * 120.00305 * 18 2 1 21 21 O 1.21284 * 119.99754 * 359.97438 * 20 18 2 22 22 C 1.50696 * 120.00137 * 179.97438 * 20 18 2 23 23 C 1.50699 * 109.47192 * 179.97438 * 22 20 18 24 24 C 1.33386 * 125.20393 * 89.99922 * 23 22 20 25 25 C 1.38418 * 114.92138 * 179.97438 * 24 23 22 26 26 C 1.33388 * 114.92332 * 0.02562 * 25 24 23 27 27 S 1.75879 * 109.59071 * 359.75086 * 26 25 24 28 28 H 1.09002 * 109.47539 * 59.99857 * 1 2 3 29 29 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46792 * 299.99932 * 1 2 3 31 31 H 1.09000 * 109.46864 * 294.99655 * 4 2 1 32 32 H 1.08999 * 109.47302 * 54.99655 * 4 2 1 33 33 H 1.00899 * 111.00239 * 56.03857 * 5 4 2 34 34 H 1.09000 * 109.47205 * 299.99381 * 6 5 4 35 35 H 1.08998 * 109.47536 * 59.99811 * 6 5 4 36 36 H 0.96997 * 119.99590 * 359.97438 * 9 7 6 37 37 H 0.96998 * 119.99779 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.46661 * 89.99886 * 19 18 2 39 39 H 1.08993 * 109.47575 * 210.00600 * 19 18 2 40 40 H 1.09001 * 109.46870 * 330.00556 * 19 18 2 41 41 H 1.09004 * 109.47043 * 299.99732 * 22 20 18 42 42 H 1.09000 * 109.46978 * 59.99653 * 22 20 18 43 43 H 1.08003 * 122.53946 * 359.96126 * 24 23 22 44 44 H 1.07999 * 122.53938 * 180.02562 * 25 24 23 45 45 H 1.07999 * 125.20725 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5041 -0.8267 1.1903 6 6 4.0304 -1.5150 2.3766 7 6 5.5316 -1.6045 2.2805 8 8 6.1066 -1.1402 1.3187 9 7 6.2356 -2.1996 3.2638 10 6 7.6013 -2.2806 3.1767 11 1 8.1132 -1.8679 2.3198 12 6 8.3270 -2.8937 4.1907 13 7 7.7043 -3.3954 5.2334 14 14 10.1880 -3.0047 4.0716 15 1 10.7967 -1.8050 4.7004 16 1 10.6571 -4.2248 4.7762 17 1 10.5894 -3.0726 2.6435 18 7 2.0182 -0.6906 -1.1963 19 6 1.6693 -2.0949 -1.4251 20 6 2.7931 -0.0356 -2.0834 21 8 3.0858 1.1256 -1.8916 22 6 3.2958 -0.7461 -3.3136 23 6 4.1324 0.2013 -4.1343 24 6 5.4494 0.3708 -4.0080 25 6 6.0038 1.2978 -4.8736 26 6 5.1370 1.8815 -5.7025 27 16 3.5228 1.2477 -5.4097 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6053 -1.7199 1.2950 33 1 3.9280 0.0825 1.0822 34 1 3.7559 -0.9572 3.2719 35 1 3.6096 -2.5190 2.4308 36 1 5.7758 -2.5699 4.0335 37 1 8.2110 -3.8230 5.9415 38 1 0.7413 -2.1506 -1.9941 39 1 2.4683 -2.5814 -1.9844 40 1 1.5385 -2.5976 -0.4667 41 1 3.9016 -1.6023 -3.0167 42 1 2.4482 -1.0890 -3.9070 43 1 6.0386 -0.1738 -3.2849 44 1 7.0584 1.5308 -4.8775 45 1 5.3887 2.6259 -6.4434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732449862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:06 Heat of formation + Delta-G solvation = -31.709491 kcal Electronic energy + Delta-G solvation = -26988.326546 eV Core-core repulsion = 23132.794605 eV Total energy + Delta-G solvation = -3855.531941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.07257 -38.29800 -37.76002 -36.66061 -34.65079 -33.78575 -32.62028 -31.27152 -31.07745 -27.57746 -27.19807 -26.84280 -24.99055 -23.58710 -23.10320 -21.41459 -19.50188 -19.17707 -18.90585 -17.86297 -17.38335 -17.02365 -16.42000 -15.78955 -15.71605 -15.34534 -15.01560 -14.56404 -14.39993 -13.98361 -13.72912 -13.67816 -13.41850 -13.16627 -12.96744 -12.76825 -12.62029 -12.51134 -12.48984 -12.23300 -12.16140 -11.92816 -11.71160 -11.55838 -11.48391 -11.39462 -11.03177 -10.88869 -10.76568 -10.38807 -10.20969 -9.73124 -9.49788 -8.64110 -8.60362 -8.41794 -8.40077 -8.03007 -7.94365 -6.40948 -3.81542 0.99800 1.64390 1.99614 2.72887 2.78993 3.11073 3.18432 3.26877 3.33015 3.92676 4.08948 4.30788 4.57269 4.68945 4.90432 4.98515 5.01090 5.07027 5.10127 5.11567 5.22842 5.27952 5.35744 5.42826 5.47128 5.51101 5.56062 5.59937 5.66462 5.75589 5.80085 5.89241 5.97772 6.02184 6.17743 6.27439 6.32642 6.53243 6.56717 7.23392 7.43478 7.56043 7.67451 8.07548 8.30198 8.62762 9.19202 9.55640 10.07563 10.76947 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.002875 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.700535 B = 9735.350301 C =11967.148286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 H 0.099 0.901 4 C 0.047 3.953 5 N -0.663 5.663 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.580 6.580 9 N -0.565 5.565 10 C -0.298 4.298 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.929 3.071 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 N -0.594 5.594 19 C 0.082 3.918 20 C 0.524 3.476 21 O -0.531 6.531 22 C -0.068 4.068 23 C -0.153 4.153 24 C -0.124 4.124 25 C -0.128 4.128 26 C -0.217 4.217 27 S 0.089 5.911 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.351 0.649 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.814 3.573 -15.707 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.034 3.966 3 H 0.117 0.883 4 C -0.084 4.084 5 N -0.295 5.295 6 C -0.081 4.081 7 C 0.227 3.773 8 O -0.464 6.464 9 N -0.202 5.202 10 C -0.428 4.428 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.545 5.545 14 Si 0.756 3.244 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 N -0.327 5.327 19 C -0.061 4.061 20 C 0.312 3.688 21 O -0.407 6.407 22 C -0.110 4.110 23 C -0.270 4.270 24 C -0.154 4.154 25 C -0.159 4.159 26 C -0.353 4.353 27 S 0.352 5.648 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.171 0.829 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.133 0.867 42 H 0.117 0.883 43 H 0.161 0.839 44 H 0.157 0.843 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.600 4.114 -17.118 24.197 hybrid contribution 1.968 -0.056 1.999 2.806 sum -14.632 4.058 -15.119 21.427 Atomic orbital electron populations 1.22077 0.94680 1.02359 1.02454 1.21069 0.93445 0.98057 0.84004 0.88258 1.22358 0.89738 1.00441 0.95833 1.60031 1.03002 1.26958 1.39515 1.21666 0.95296 0.99723 0.91457 1.19817 0.88028 0.84467 0.85020 1.90537 1.71092 1.51616 1.33147 1.41863 1.07384 1.51178 1.19783 1.19698 0.81542 1.35074 1.06443 0.87973 1.25251 1.00648 0.96812 0.95244 1.69611 1.36657 1.38851 1.09349 0.85868 0.82264 0.77627 0.78606 1.20427 1.20930 1.19392 1.47511 1.50980 1.12061 1.22176 1.21709 1.00133 0.81780 1.02523 1.20286 0.77626 0.86945 0.83988 1.90703 1.56555 1.17023 1.76410 1.20177 0.99720 0.97476 0.93594 1.23765 0.97086 1.03821 1.02343 1.20199 0.94088 1.00328 1.00787 1.20172 1.01044 0.97994 0.96653 1.25518 0.95553 1.07372 1.06821 1.83999 1.10463 1.37704 1.32658 0.92151 0.92176 0.91443 0.94500 0.90851 0.82935 0.94062 0.89824 0.77528 0.91911 0.93157 0.91003 0.90731 0.86662 0.88336 0.83923 0.84297 0.82151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.20 37.16 0.34 -0.96 16 2 C 0.14 1.57 2.88 -67.93 -0.20 1.37 16 3 H 0.10 1.36 6.90 -51.93 -0.36 1.00 16 4 C 0.05 0.56 4.92 -3.82 -0.02 0.54 16 5 N -0.66 -10.80 5.85 -115.06 -0.67 -11.47 16 6 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 7 C 0.44 10.51 7.82 -10.98 -0.09 10.42 16 8 O -0.58 -16.00 15.78 5.55 0.09 -15.91 16 9 N -0.57 -14.43 5.29 -10.96 -0.06 -14.49 16 10 C -0.30 -8.39 9.68 -14.94 -0.14 -8.53 16 11 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 14 Si 0.93 21.23 29.55 -169.99 -5.02 16.20 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 N -0.59 -6.90 2.49 -173.94 -0.43 -7.34 16 19 C 0.08 0.70 9.32 59.85 0.56 1.26 16 20 C 0.52 7.34 7.67 -10.99 -0.08 7.26 16 21 O -0.53 -9.51 15.36 5.55 0.09 -9.43 16 22 C -0.07 -0.77 4.75 -29.04 -0.14 -0.91 16 23 C -0.15 -1.98 5.00 -36.00 -0.18 -2.16 16 24 C -0.12 -1.70 10.05 -41.21 -0.41 -2.11 16 25 C -0.13 -1.56 10.18 -41.21 -0.42 -1.98 16 26 C -0.22 -2.41 11.23 29.04 0.33 -2.08 16 27 S 0.09 1.02 23.33 -107.50 -2.51 -1.49 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.43 7.68 -51.93 -0.40 0.03 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.78 6.87 -51.93 -0.36 0.43 16 33 H 0.35 6.50 8.43 -39.29 -0.33 6.17 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 37 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.58 6.43 -51.93 -0.33 0.25 16 40 H 0.07 0.63 6.52 -51.93 -0.34 0.29 16 41 H 0.12 1.21 7.39 -51.93 -0.38 0.83 16 42 H 0.10 0.83 8.11 -51.93 -0.42 0.41 16 43 H 0.14 2.01 8.06 -52.48 -0.42 1.59 16 44 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 391.09 15.07 5.89 5.89 Total: -1.00 -34.35 391.09 -9.05 -43.40 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -6.56 Total: 15.13 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -0.58 Total: 3.48 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.44 Total: -57.28 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: 0.17 Total: -25.34 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.51 Total: -1.49 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.35 -9.05 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732449862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.686 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds