Wall clock time and date at job start Sat Apr 11 2020 05:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47040 * 2 1 4 4 C 1.52997 * 109.47206 * 120.00470 * 2 1 3 5 5 N 1.46904 * 109.47053 * 175.00067 * 4 2 1 6 6 C 1.46903 * 110.99696 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.46617 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00416 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99857 * 179.97438 * 7 6 5 10 10 C 1.37092 * 120.00092 * 180.02562 * 9 7 6 11 11 H 1.08009 * 120.00131 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00024 * 179.97438 * 10 9 7 13 13 N 1.31410 * 120.00074 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00064 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47366 * 89.99971 * 14 12 10 16 16 H 1.48498 * 109.46922 * 210.00194 * 14 12 10 17 17 H 1.48499 * 109.47020 * 330.00014 * 14 12 10 18 18 N 1.46506 * 109.46656 * 240.00112 * 2 1 3 19 19 C 1.46498 * 120.00239 * 299.72110 * 18 2 1 20 20 C 1.34777 * 119.99873 * 120.00305 * 18 2 1 21 21 O 1.21284 * 119.99754 * 359.97438 * 20 18 2 22 22 C 1.50696 * 120.00137 * 179.97438 * 20 18 2 23 23 C 1.50699 * 109.47192 * 179.97438 * 22 20 18 24 24 C 1.33386 * 125.20393 * 89.99922 * 23 22 20 25 25 C 1.38418 * 114.92138 * 179.97438 * 24 23 22 26 26 C 1.33388 * 114.92332 * 0.02562 * 25 24 23 27 27 S 1.75879 * 109.59071 * 359.75086 * 26 25 24 28 28 H 1.09002 * 109.47539 * 59.99857 * 1 2 3 29 29 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46792 * 299.99932 * 1 2 3 31 31 H 1.09000 * 109.46864 * 294.99655 * 4 2 1 32 32 H 1.08999 * 109.47302 * 54.99655 * 4 2 1 33 33 H 1.00899 * 111.00239 * 56.03857 * 5 4 2 34 34 H 1.09000 * 109.47205 * 299.99381 * 6 5 4 35 35 H 1.08998 * 109.47536 * 59.99811 * 6 5 4 36 36 H 0.96997 * 119.99590 * 359.97438 * 9 7 6 37 37 H 0.96998 * 119.99779 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.46661 * 89.99886 * 19 18 2 39 39 H 1.08993 * 109.47575 * 210.00600 * 19 18 2 40 40 H 1.09001 * 109.46870 * 330.00556 * 19 18 2 41 41 H 1.09004 * 109.47043 * 299.99732 * 22 20 18 42 42 H 1.09000 * 109.46978 * 59.99653 * 22 20 18 43 43 H 1.08003 * 122.53946 * 359.96126 * 24 23 22 44 44 H 1.07999 * 122.53938 * 180.02562 * 25 24 23 45 45 H 1.07999 * 125.20725 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5041 -0.8267 1.1903 6 6 4.0304 -1.5150 2.3766 7 6 5.5316 -1.6045 2.2805 8 8 6.1066 -1.1402 1.3187 9 7 6.2356 -2.1996 3.2638 10 6 7.6013 -2.2806 3.1767 11 1 8.1132 -1.8679 2.3198 12 6 8.3270 -2.8937 4.1907 13 7 7.7043 -3.3954 5.2334 14 14 10.1880 -3.0047 4.0716 15 1 10.7967 -1.8050 4.7004 16 1 10.6571 -4.2248 4.7762 17 1 10.5894 -3.0726 2.6435 18 7 2.0182 -0.6906 -1.1963 19 6 1.6693 -2.0949 -1.4251 20 6 2.7931 -0.0356 -2.0834 21 8 3.0858 1.1256 -1.8916 22 6 3.2958 -0.7461 -3.3136 23 6 4.1324 0.2013 -4.1343 24 6 5.4494 0.3708 -4.0080 25 6 6.0038 1.2978 -4.8736 26 6 5.1370 1.8815 -5.7025 27 16 3.5228 1.2477 -5.4097 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6053 -1.7199 1.2950 33 1 3.9280 0.0825 1.0822 34 1 3.7559 -0.9572 3.2719 35 1 3.6096 -2.5190 2.4308 36 1 5.7758 -2.5699 4.0335 37 1 8.2110 -3.8230 5.9415 38 1 0.7413 -2.1506 -1.9941 39 1 2.4683 -2.5814 -1.9844 40 1 1.5385 -2.5976 -0.4667 41 1 3.9016 -1.6023 -3.0167 42 1 2.4482 -1.0890 -3.9070 43 1 6.0386 -0.1738 -3.2849 44 1 7.0584 1.5308 -4.8775 45 1 5.3887 2.6259 -6.4434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732449862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:05 Heat of formation + Delta-G solvation = -55.911533 kcal Electronic energy + Delta-G solvation = -26989.376026 eV Core-core repulsion = 23132.794605 eV Total energy + Delta-G solvation = -3856.581421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.07615 -40.13197 -38.74508 -37.78012 -36.15315 -35.52660 -33.62993 -33.25020 -32.05079 -28.96589 -28.11106 -27.63092 -26.68042 -24.73334 -24.27556 -22.35840 -21.12173 -20.31540 -19.98754 -19.81846 -18.36954 -17.99639 -17.83789 -17.15924 -16.71981 -16.58475 -16.34307 -16.14751 -15.94806 -15.28001 -15.14753 -14.92232 -14.48362 -14.18547 -14.09129 -13.86444 -13.65056 -13.54238 -13.52903 -13.36177 -13.20427 -13.07987 -13.00591 -12.81490 -12.75774 -12.55425 -12.43809 -12.37893 -12.13238 -11.76602 -11.70711 -11.52377 -10.81915 -10.36751 -10.02692 -9.57859 -9.49556 -9.33612 -9.30908 -8.48220 -5.96773 0.05273 0.73162 1.06511 1.36319 1.40102 1.52845 1.72086 1.79953 2.04617 2.21668 2.28134 2.91544 3.19041 3.50357 3.63421 3.76870 3.99203 4.15001 4.20436 4.24676 4.31629 4.35004 4.37015 4.50343 4.51042 4.56703 4.65445 4.68306 4.71935 4.76674 4.81260 4.83665 5.05701 5.13140 5.20939 5.28896 5.38385 5.39306 5.56708 5.69219 5.88284 6.10515 6.29326 6.50362 6.59377 7.11752 7.29846 7.55212 8.11457 8.69268 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.002875 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.700535 B = 9735.350301 C =11967.148286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.136 3.864 3 H 0.068 0.932 4 C 0.050 3.950 5 N -0.675 5.675 6 C 0.067 3.933 7 C 0.437 3.563 8 O -0.624 6.624 9 N -0.573 5.573 10 C -0.334 4.334 11 H 0.076 0.924 12 C -0.011 4.011 13 N -0.920 5.920 14 Si 0.991 3.009 15 H -0.272 1.272 16 H -0.268 1.268 17 H -0.274 1.274 18 N -0.591 5.591 19 C 0.074 3.926 20 C 0.514 3.486 21 O -0.582 6.582 22 C -0.065 4.065 23 C -0.168 4.168 24 C -0.149 4.149 25 C -0.147 4.147 26 C -0.214 4.214 27 S 0.108 5.892 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.334 0.666 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.152 0.848 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.554 2.597 -15.811 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.032 3.968 3 H 0.086 0.914 4 C -0.079 4.079 5 N -0.306 5.306 6 C -0.065 4.065 7 C 0.224 3.776 8 O -0.510 6.510 9 N -0.211 5.211 10 C -0.463 4.463 11 H 0.094 0.906 12 C -0.211 4.211 13 N -0.561 5.561 14 Si 0.814 3.186 15 H -0.197 1.197 16 H -0.193 1.193 17 H -0.199 1.199 18 N -0.323 5.323 19 C -0.068 4.068 20 C 0.303 3.697 21 O -0.462 6.462 22 C -0.106 4.106 23 C -0.285 4.285 24 C -0.180 4.180 25 C -0.177 4.177 26 C -0.349 4.349 27 S 0.371 5.629 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.151 0.849 34 H 0.080 0.920 35 H 0.127 0.873 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.137 0.863 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.169 0.831 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -18.398 3.085 -17.192 25.369 hybrid contribution 2.446 0.258 2.029 3.188 sum -15.952 3.343 -15.163 22.261 Atomic orbital electron populations 1.21990 0.91749 1.03767 1.02917 1.21100 0.95528 0.96369 0.83762 0.91388 1.22478 0.86788 1.02014 0.96641 1.60059 1.05574 1.25916 1.39031 1.21533 0.90389 1.01673 0.92913 1.20938 0.90666 0.82401 0.83550 1.90511 1.72833 1.52959 1.34708 1.41920 1.06809 1.51839 1.20485 1.19632 0.83129 1.36982 1.06588 0.90636 1.26006 1.04813 0.95782 0.94516 1.69664 1.38244 1.38595 1.09581 0.84963 0.76978 0.78253 0.78366 1.19735 1.19289 1.19859 1.47659 1.49881 1.13207 1.21546 1.21972 1.01647 0.79753 1.03430 1.20760 0.77471 0.86580 0.84931 1.90672 1.58622 1.19237 1.77690 1.20246 1.00620 0.96890 0.92856 1.24063 0.97158 1.04344 1.02964 1.20301 0.94780 1.01448 1.01463 1.20342 1.02093 0.98277 0.97020 1.25897 0.95079 1.07213 1.06703 1.83843 1.10508 1.37003 1.31526 0.92501 0.90184 0.90242 0.93074 0.88615 0.84878 0.91961 0.87275 0.76952 0.91259 0.90177 0.90715 0.90161 0.86269 0.85152 0.85670 0.83064 0.79341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.20 71.98 0.66 -1.37 16 2 C 0.14 2.94 2.88 44.99 0.13 3.07 16 3 H 0.07 1.92 6.90 -2.39 -0.02 1.90 16 4 C 0.05 1.09 4.92 86.30 0.42 1.51 16 5 N -0.67 -21.60 5.85 -517.92 -3.03 -24.63 16 6 C 0.07 2.29 6.17 85.56 0.53 2.81 16 7 C 0.44 21.13 7.82 87.66 0.69 21.82 16 8 O -0.62 -35.73 15.78 -3.07 -0.05 -35.78 16 9 N -0.57 -29.73 5.29 -306.98 -1.62 -31.35 16 10 C -0.33 -19.26 9.68 84.04 0.81 -18.45 16 11 H 0.08 4.69 7.16 -2.91 -0.02 4.66 16 12 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 13 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16 14 Si 0.99 43.45 29.55 68.60 2.03 45.48 16 15 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 18 N -0.59 -13.11 2.49 -822.61 -2.04 -15.15 16 19 C 0.07 1.07 9.32 127.77 1.19 2.26 16 20 C 0.51 14.55 7.67 87.66 0.67 15.22 16 21 O -0.58 -21.83 15.36 -3.04 -0.05 -21.88 16 22 C -0.06 -1.45 4.75 29.10 0.14 -1.31 16 23 C -0.17 -4.43 5.00 24.59 0.12 -4.31 16 24 C -0.15 -4.33 10.05 21.21 0.21 -4.12 16 25 C -0.15 -3.67 10.18 21.21 0.22 -3.45 16 26 C -0.21 -4.59 11.23 66.72 0.75 -3.84 16 27 S 0.11 2.41 23.33 -56.49 -1.32 1.10 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 0.82 7.68 -2.38 -0.02 0.80 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 1.68 6.87 -2.39 -0.02 1.67 16 33 H 0.33 12.71 8.43 -89.69 -0.76 11.96 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 37 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 1.06 6.43 -2.39 -0.02 1.04 16 40 H 0.08 1.09 6.52 -2.39 -0.02 1.08 16 41 H 0.12 2.53 7.39 -2.38 -0.02 2.51 16 42 H 0.13 1.98 8.11 -2.39 -0.02 1.96 16 43 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 44 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 45 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -77.58 391.09 0.75 -76.83 By element: Atomic # 1 Polarization: 45.71 SS G_CDS: -0.46 Total: 45.25 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 7.01 Total: 9.70 kcal Atomic # 7 Polarization: -114.28 SS G_CDS: -6.41 Total: -120.70 kcal Atomic # 8 Polarization: -57.56 SS G_CDS: -0.10 Total: -57.66 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.32 Total: 1.10 kcal Total: -77.58 0.75 -76.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732449862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.919 kcal (2) G-P(sol) polarization free energy of solvation -77.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds