Wall clock time and date at job start Sat Apr 11 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35739 * 116.99494 * 2 1 4 4 C 1.39284 * 120.84967 * 359.97438 * 3 2 1 5 5 C 1.37953 * 119.08936 * 180.02562 * 4 3 2 6 6 N 1.31973 * 120.82702 * 359.97438 * 5 4 3 7 7 C 1.31951 * 121.86145 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.58554 * 179.97438 * 7 6 5 9 9 N 1.46906 * 109.47183 * 275.00156 * 8 7 6 10 10 C 1.46901 * 110.99793 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.46769 * 180.02562 * 10 9 8 12 12 H 1.08991 * 109.47625 * 64.99793 * 11 10 9 13 13 C 1.53006 * 109.46846 * 185.00040 * 11 10 9 14 14 N 1.46504 * 109.47054 * 304.99530 * 11 10 9 15 15 C 1.34777 * 119.99976 * 155.00344 * 14 11 10 16 16 O 1.21285 * 119.99729 * 0.02562 * 15 14 11 17 17 C 1.50692 * 120.00099 * 180.02562 * 15 14 11 18 18 S 1.80998 * 109.47460 * 179.97438 * 17 15 14 19 19 C 1.76196 * 100.00434 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99940 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00037 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99971 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99817 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47420 * 59.99639 * 23 21 19 25 25 H 1.48502 * 109.47045 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47498 * 299.99612 * 23 21 19 27 27 C 1.37988 * 120.82170 * 0.27572 * 7 6 5 28 28 H 1.08998 * 109.47215 * 299.99936 * 1 2 3 29 29 H 1.09002 * 109.46660 * 60.00930 * 1 2 3 30 30 H 1.09007 * 109.46568 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.44968 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.58481 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.46796 * 155.00360 * 8 7 6 34 34 H 1.09002 * 109.47497 * 35.00154 * 8 7 6 35 35 H 1.00898 * 110.99995 * 303.95361 * 9 8 7 36 36 H 1.09002 * 109.47401 * 59.99808 * 10 9 8 37 37 H 1.09001 * 109.46874 * 299.99821 * 10 9 8 38 38 H 1.09001 * 109.47241 * 59.99481 * 13 11 10 39 39 H 1.08996 * 109.46751 * 179.97438 * 13 11 10 40 40 H 1.09002 * 109.46824 * 299.99583 * 13 11 10 41 41 H 0.96996 * 120.00090 * 335.00419 * 14 11 10 42 42 H 1.08999 * 109.47314 * 300.00030 * 17 15 14 43 43 H 1.09008 * 109.47283 * 59.99627 * 17 15 14 44 44 H 0.97001 * 119.99804 * 180.02562 * 22 21 19 45 45 H 1.08008 * 120.45469 * 179.70664 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 -0.0005 5 6 1.9676 3.5981 -0.0011 6 7 3.2864 3.6458 -0.0005 7 6 4.0230 2.5510 0.0000 8 6 5.5257 2.6653 0.0000 9 7 6.0048 2.8222 -1.3799 10 6 7.4689 2.9363 -1.4189 11 6 7.9292 3.0985 -2.8690 12 1 7.5557 4.0426 -3.2653 13 6 9.4583 3.0922 -2.9223 14 7 7.4080 1.9908 -3.6736 15 6 7.2335 2.1459 -5.0010 16 8 7.5085 3.2024 -5.5294 17 6 6.6968 1.0066 -5.8287 18 16 6.5770 1.5223 -7.5595 19 6 5.9412 0.0435 -8.2761 20 1 5.7500 -0.8189 -7.6546 21 6 5.6870 -0.0134 -9.6394 22 7 5.9204 1.0375 -10.3969 23 14 5.0136 -1.5814 -10.3992 24 1 3.7065 -1.9116 -9.7764 25 1 4.8298 -1.3845 -11.8596 26 1 5.9684 -2.6944 -10.1657 27 6 3.4345 1.3029 -0.0057 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0278 -0.0005 31 1 0.2244 2.3565 -0.0005 32 1 1.4007 4.5174 -0.0011 33 1 5.9585 1.7643 0.4346 34 1 5.8242 3.5325 0.5890 35 1 5.6860 2.0622 -1.9620 36 1 7.9149 2.0369 -0.9941 37 1 7.7812 3.8052 -0.8395 38 1 9.8319 2.1480 -2.5259 39 1 9.7863 3.2074 -3.9554 40 1 9.8461 3.9164 -2.3236 41 1 7.1884 1.1457 -3.2511 42 1 7.3687 0.1520 -5.7495 43 1 5.7084 0.7267 -5.4640 44 1 5.7424 0.9978 -11.3496 45 1 4.0432 0.4107 -0.0100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732945807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:09 Heat of formation + Delta-G solvation = -39.088922 kcal Electronic energy + Delta-G solvation = -25942.646341 eV Core-core repulsion = 22086.794404 eV Total energy + Delta-G solvation = -3855.851937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.97573 -39.43580 -38.73880 -36.96753 -34.59896 -32.40591 -32.06344 -31.80308 -30.99492 -28.51805 -28.21947 -26.82483 -25.45721 -24.22557 -23.76472 -21.87994 -21.43477 -20.23396 -18.46373 -17.84377 -17.45341 -16.53109 -16.30712 -16.23977 -15.99841 -15.53902 -15.37901 -15.20840 -14.78751 -14.71804 -14.36100 -14.06770 -13.86903 -13.69010 -13.33390 -13.18286 -12.82872 -12.68271 -12.52941 -12.28827 -12.18932 -11.99010 -11.91181 -11.67673 -11.48185 -11.02795 -11.02244 -10.96358 -10.74388 -9.79681 -9.76901 -9.46879 -9.31295 -9.21548 -9.04056 -8.86526 -8.66731 -8.20139 -6.46417 -6.19055 -3.89150 0.72171 1.04224 2.68445 3.07222 3.17246 3.24676 3.28729 3.32328 3.37782 3.75488 3.90314 4.10260 4.22933 4.27762 4.50366 4.63249 4.68922 4.69812 4.79422 4.83602 5.01141 5.03060 5.08683 5.15783 5.20036 5.21802 5.31493 5.40372 5.45722 5.47158 5.59348 5.63744 5.72183 5.72517 5.92884 6.11941 6.15070 6.17233 6.21111 6.65357 6.73866 6.78859 7.06298 7.61397 7.75504 7.78135 8.37323 8.69378 9.25979 10.88330 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008180 B = 0.002725 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3422.347410 B =10272.140482 C =12957.176387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.169 3.831 4 C -0.263 4.263 5 C 0.140 3.860 6 N -0.486 5.486 7 C 0.166 3.834 8 C 0.110 3.890 9 N -0.678 5.678 10 C 0.055 3.945 11 C 0.145 3.855 12 H 0.097 0.903 13 C -0.163 4.163 14 N -0.735 5.735 15 C 0.535 3.465 16 O -0.515 6.515 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.071 0.929 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.201 4.201 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.139 0.861 32 H 0.159 0.841 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.345 0.655 36 H 0.036 0.964 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.392 0.608 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.269 0.731 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.953 -0.471 27.540 28.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.115 3.885 4 C -0.284 4.284 5 C -0.018 4.018 6 N -0.199 5.199 7 C 0.029 3.971 8 C -0.019 4.019 9 N -0.310 5.310 10 C -0.074 4.074 11 C 0.040 3.960 12 H 0.115 0.885 13 C -0.222 4.222 14 N -0.389 5.389 15 C 0.321 3.679 16 O -0.388 6.388 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.222 4.222 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.157 0.843 32 H 0.177 0.823 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.164 0.836 36 H 0.054 0.946 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.225 0.775 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.112 2.647 26.458 27.077 hybrid contribution -1.479 -4.358 0.470 4.626 sum -6.591 -1.711 26.928 27.775 Atomic orbital electron populations 1.23162 0.77573 1.04514 1.01744 1.86077 1.22074 1.26303 1.87742 1.19297 0.92374 0.84652 0.92149 1.22253 1.01614 0.93356 1.11209 1.22602 0.90099 0.97034 0.92020 1.67556 1.06696 1.31725 1.13874 1.20895 0.96166 0.87310 0.92722 1.20787 0.88006 1.01807 0.91283 1.60300 1.10409 1.51554 1.08776 1.22301 0.87140 1.01500 0.96504 1.20934 0.93466 0.92289 0.89357 0.88499 1.22162 0.95080 1.01645 1.03268 1.46049 1.68685 1.16023 1.08158 1.20236 0.76904 0.89216 0.81523 1.90701 1.49003 1.28061 1.71060 1.23535 1.03376 0.99513 1.04038 1.85398 1.84978 1.20353 0.92471 1.22834 1.50200 0.99560 0.95843 0.91049 1.24983 0.95208 0.97317 0.96051 1.70010 1.45421 1.28807 1.06057 0.86238 0.79350 0.82007 0.77979 1.19974 1.20811 1.19956 1.21306 0.92179 0.99667 1.09061 0.92357 0.92094 0.87761 0.84350 0.82339 0.93361 0.88743 0.83594 0.94590 0.89307 0.92718 0.91372 0.91762 0.77481 0.89389 0.89370 0.92148 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.84 101.05 0.99 1.13 16 2 O -0.31 -2.87 10.51 -18.92 -0.20 -3.07 16 3 C 0.17 1.66 6.74 -38.82 -0.26 1.40 16 4 C -0.26 -2.26 9.11 -39.30 -0.36 -2.62 16 5 C 0.14 1.32 11.17 -17.60 -0.20 1.13 16 6 N -0.49 -5.64 10.27 -9.55 -0.10 -5.74 16 7 C 0.17 1.74 6.29 -82.63 -0.52 1.22 16 8 C 0.11 0.96 5.99 -4.97 -0.03 0.93 16 9 N -0.68 -6.85 6.48 -115.05 -0.75 -7.60 16 10 C 0.06 0.48 5.30 -3.82 -0.02 0.46 16 11 C 0.14 1.70 2.88 -67.92 -0.20 1.51 16 12 H 0.10 1.43 7.58 -51.93 -0.39 1.04 16 13 C -0.16 -1.75 9.48 37.16 0.35 -1.40 16 14 N -0.73 -9.71 4.36 -53.81 -0.23 -9.95 16 15 C 0.54 10.05 7.81 -10.99 -0.09 9.97 16 16 O -0.51 -11.82 15.53 5.55 0.09 -11.73 16 17 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.44 9.50 30.94 0.29 -15.14 16 20 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.43 13.22 55.49 0.73 -25.69 16 23 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 C -0.20 -1.97 9.68 -39.30 -0.38 -2.36 16 28 H 0.06 0.23 7.71 -51.93 -0.40 -0.17 16 29 H 0.06 0.30 7.71 -51.93 -0.40 -0.10 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.14 0.82 6.47 -52.49 -0.34 0.48 16 32 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.05 0.32 8.04 -51.93 -0.42 -0.10 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.34 3.60 7.57 -39.29 -0.30 3.30 16 36 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.39 4.04 8.15 -40.82 -0.33 3.71 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 44 H 0.27 7.61 8.31 -40.82 -0.34 7.28 16 45 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 LS Contribution 396.00 15.07 5.97 5.97 Total: -1.00 -36.84 396.00 -8.78 -45.63 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.78 Total: 4.14 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.28 Total: -4.67 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.34 Total: -48.98 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.11 Total: -14.81 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.84 -8.78 -45.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732945807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.537 kcal (2) G-P(sol) polarization free energy of solvation -36.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds