Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47638 * 2 1 4 4 C 1.53001 * 109.46749 * 120.00503 * 2 1 3 5 5 N 1.46904 * 109.47008 * 174.99933 * 4 2 1 6 6 C 1.46906 * 110.99918 * 179.97438 * 5 4 2 7 7 C 1.50695 * 109.47048 * 179.97438 * 6 5 4 8 8 C 1.35451 * 126.77253 * 90.00354 * 7 6 5 9 9 C 1.41378 * 103.98546 * 179.97438 * 8 7 6 10 10 C 1.50708 * 126.80201 * 180.02562 * 9 8 7 11 11 C 1.52999 * 117.49801 * 343.73197 * 10 9 8 12 12 C 1.53002 * 117.49813 * 275.07198 * 10 9 8 13 13 N 1.30171 * 106.39621 * 0.02562 * 9 8 7 14 14 O 1.20923 * 111.60389 * 359.97438 * 13 9 8 15 15 N 1.46500 * 109.47217 * 239.99898 * 2 1 3 16 16 C 1.34776 * 119.99907 * 85.00144 * 15 2 1 17 17 O 1.21283 * 120.00084 * 0.02562 * 16 15 2 18 18 C 1.50705 * 119.99769 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46766 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99977 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99638 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00108 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99780 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99700 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47182 * 90.00440 * 24 22 20 26 26 H 1.48510 * 109.46671 * 209.99857 * 24 22 20 27 27 H 1.48491 * 109.47260 * 329.99788 * 24 22 20 28 28 H 1.09004 * 109.47389 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46990 * 299.99910 * 1 2 3 30 30 H 1.09000 * 109.46911 * 59.99697 * 1 2 3 31 31 H 1.08995 * 109.47972 * 54.99534 * 4 2 1 32 32 H 1.09002 * 109.46834 * 294.99361 * 4 2 1 33 33 H 1.00901 * 110.99935 * 56.04371 * 5 4 2 34 34 H 1.09002 * 109.46757 * 59.99897 * 6 5 4 35 35 H 1.08999 * 109.47452 * 300.00495 * 6 5 4 36 36 H 1.08005 * 128.00874 * 0.02562 * 8 7 6 37 37 H 1.08999 * 115.54934 * 129.40665 * 10 9 8 38 38 H 1.08998 * 117.49696 * 359.97438 * 11 10 9 39 39 H 1.08997 * 117.49815 * 145.02199 * 11 10 9 40 40 H 1.08996 * 117.50049 * 214.98522 * 12 10 9 41 41 H 1.08998 * 117.49849 * 359.97438 * 12 10 9 42 42 H 0.97006 * 120.00240 * 265.00701 * 15 2 1 43 43 H 1.09000 * 109.46975 * 300.00130 * 18 16 15 44 44 H 1.08990 * 109.46894 * 60.00349 * 18 16 15 45 45 H 0.96998 * 119.99609 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 3.5040 -0.8268 1.1904 6 6 4.0303 -1.5152 2.3768 7 6 5.5315 -1.6048 2.2808 8 6 6.4289 -0.7010 2.7418 9 6 7.6821 -1.2593 2.4006 10 6 9.0400 -0.6676 2.6790 11 6 9.1019 0.8159 3.0480 12 6 9.5876 0.3478 1.6740 13 7 7.4309 -2.3856 1.7983 14 8 6.2423 -2.5946 1.7226 15 7 2.0183 -0.6906 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8591 1.1586 -2.4115 18 6 2.6500 -0.7286 -3.5874 19 16 2.7115 0.4346 -4.9728 20 6 3.3145 -0.6306 -6.2402 21 1 3.5239 -1.6671 -6.0202 22 6 3.5215 -0.1375 -7.5211 23 7 3.9724 -0.9332 -8.4677 24 14 3.1600 1.6553 -7.9013 25 1 4.3791 2.4681 -7.6597 26 1 2.7510 1.7870 -9.3229 27 1 2.0626 2.1359 -7.0240 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6053 -1.7199 1.2952 32 1 1.7516 -0.1584 2.1369 33 1 3.9279 0.0824 1.0824 34 1 3.6094 -2.5192 2.4308 35 1 3.7557 -0.9575 3.2721 36 1 6.2325 0.2301 3.2526 37 1 9.7545 -1.3360 3.1593 38 1 8.1606 1.3640 3.0891 39 1 9.8575 1.1236 3.7709 40 1 10.6625 0.3476 1.4933 41 1 8.9661 0.5875 0.8112 42 1 2.2490 -1.6319 -1.1526 43 1 3.6493 -1.1204 -3.3977 44 1 1.9778 -1.5508 -3.8325 45 1 4.1174 -0.5885 -9.3627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732988650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = 47.192509 kcal Electronic energy + Delta-G solvation = -25960.341211 eV Core-core repulsion = 22108.230717 eV Total energy + Delta-G solvation = -3852.110494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.18945 -39.49087 -37.92155 -37.37884 -35.02872 -33.48638 -32.40062 -32.26088 -31.11258 -28.59279 -27.29242 -25.56776 -24.96726 -24.32698 -23.04741 -22.33290 -21.73510 -20.34355 -20.06061 -17.96545 -17.81974 -17.61780 -16.68392 -16.40776 -16.08307 -15.43556 -15.31438 -14.98816 -14.91864 -14.71575 -14.68437 -14.15627 -14.03390 -13.39491 -13.29703 -12.83351 -12.75447 -12.58654 -12.52555 -12.29562 -12.08590 -11.96930 -11.85747 -11.72498 -11.41158 -11.22633 -11.09657 -10.97428 -10.80740 -10.54250 -10.08740 -9.82003 -9.75192 -9.43477 -8.97712 -8.96203 -8.86670 -8.44727 -6.86355 -6.24682 -3.95668 1.13068 1.86867 2.75173 2.83298 3.07394 3.26815 3.34394 3.37776 3.53234 3.64738 3.73101 3.80934 4.15822 4.36794 4.40569 4.45582 4.51665 4.64301 4.70155 4.78203 4.82374 4.85980 4.92962 5.10100 5.13583 5.14377 5.19405 5.21803 5.32298 5.35019 5.38151 5.44412 5.58384 5.62172 5.69472 5.70623 5.85845 5.90429 6.05838 6.12022 6.37676 6.66341 6.82380 7.76553 7.98681 8.02839 8.46878 8.60817 9.21627 10.84734 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009150 B = 0.002583 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.468676 B =10838.819684 C =12824.802768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.085 0.915 4 C 0.052 3.948 5 N -0.682 5.682 6 C 0.139 3.861 7 C -0.022 4.022 8 C -0.223 4.223 9 C 0.046 3.954 10 C -0.089 4.089 11 C -0.163 4.163 12 C -0.162 4.162 13 N -0.356 5.356 14 O 0.114 5.886 15 N -0.719 5.719 16 C 0.533 3.467 17 O -0.526 6.526 18 C -0.123 4.123 19 S -0.144 6.144 20 C -0.519 4.519 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.048 0.952 33 H 0.350 0.650 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.169 0.831 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.403 0.597 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.865 0.007 30.015 30.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 H 0.103 0.897 4 C -0.077 4.077 5 N -0.315 5.315 6 C 0.009 3.991 7 C -0.086 4.086 8 C -0.246 4.246 9 C -0.112 4.112 10 C -0.108 4.108 11 C -0.200 4.200 12 C -0.199 4.199 13 N -0.057 5.057 14 O 0.046 5.954 15 N -0.373 5.373 16 C 0.319 3.681 17 O -0.402 6.402 18 C -0.273 4.273 19 S 0.082 5.918 20 C -0.667 4.667 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.518 5.518 24 Si 0.682 3.318 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.169 0.831 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.186 0.814 37 H 0.140 0.860 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.238 0.762 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.202 0.397 28.812 28.898 hybrid contribution 0.120 0.146 0.695 0.721 sum 2.322 0.543 29.507 29.603 Atomic orbital electron populations 1.22157 0.94897 1.02320 1.02824 1.20838 0.93916 0.97354 0.83857 0.89664 1.22336 0.87051 1.01544 0.96798 1.60371 1.05614 1.26792 1.38700 1.20306 0.84266 1.01826 0.92673 1.24242 0.96342 0.89808 0.98227 1.22346 0.90951 1.02963 1.08310 1.22612 0.96033 0.92742 0.99851 1.20105 0.92225 0.92348 1.06097 1.23030 1.03638 0.94401 0.98969 1.23061 1.01906 1.01299 0.93684 1.73863 0.94811 1.18679 1.18348 1.84877 1.12074 1.40030 1.58442 1.45831 1.68497 1.14209 1.08719 1.20231 0.76775 0.87144 0.83942 1.90681 1.49043 1.15818 1.84627 1.23266 1.04514 1.03322 0.96244 1.84728 1.87159 1.17018 1.02873 1.22333 1.50203 0.98805 0.95364 0.89405 1.24719 0.93430 0.98258 0.94975 1.69944 1.43518 1.35791 1.02574 0.86729 0.81086 0.84928 0.79065 1.19261 1.20011 1.15922 0.92291 0.91941 0.91328 0.89808 0.93364 0.83118 0.88277 0.91567 0.81395 0.86023 0.88299 0.87816 0.87784 0.88211 0.76248 0.88526 0.88627 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.48 37.16 0.35 -1.13 16 2 C 0.15 1.41 2.82 -67.93 -0.19 1.22 16 3 H 0.09 0.99 7.58 -51.93 -0.39 0.59 16 4 C 0.05 0.32 5.24 -3.82 -0.02 0.30 16 5 N -0.68 -4.95 6.21 -115.05 -0.72 -5.66 16 6 C 0.14 0.80 6.25 -4.97 -0.03 0.77 16 7 C -0.02 -0.19 7.00 -35.31 -0.25 -0.44 16 8 C -0.22 -1.87 10.40 -39.38 -0.41 -2.28 16 9 C 0.05 0.48 6.95 -82.10 -0.57 -0.09 16 10 C -0.09 -0.74 6.33 -91.77 -0.58 -1.32 16 11 C -0.16 -1.00 10.05 -26.69 -0.27 -1.27 16 12 C -0.16 -1.25 10.24 -26.69 -0.27 -1.52 16 13 N -0.36 -4.56 12.07 33.42 0.40 -4.15 16 14 O 0.11 1.34 11.20 17.19 0.19 1.53 16 15 N -0.72 -8.80 4.80 -53.81 -0.26 -9.06 16 16 C 0.53 9.35 7.81 -10.98 -0.09 9.27 16 17 O -0.53 -11.11 15.52 5.55 0.09 -11.02 16 18 C -0.12 -2.43 6.16 36.01 0.22 -2.21 16 19 S -0.14 -3.71 18.55 -107.50 -1.99 -5.70 16 20 C -0.52 -15.23 10.04 30.94 0.31 -14.92 16 21 H 0.09 2.69 8.03 -52.48 -0.42 2.27 16 22 C 0.09 2.81 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -27.04 13.97 55.49 0.78 -26.26 16 24 Si 0.86 22.09 27.74 -169.99 -4.71 17.37 16 25 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.35 2.75 8.72 -39.29 -0.34 2.41 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.17 0.96 7.63 -52.48 -0.40 0.56 16 37 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 0.56 7.34 -51.93 -0.38 0.18 16 39 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.40 4.22 8.60 -40.82 -0.35 3.87 16 43 H 0.10 1.84 8.14 -51.92 -0.42 1.41 16 44 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 45 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 397.34 15.07 5.99 5.99 Total: -1.00 -35.81 397.34 -9.07 -44.88 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.94 Total: 3.00 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -1.89 Total: -10.90 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.21 Total: -45.14 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.28 Total: -9.49 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.37 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.81 -9.07 -44.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732988650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.072 kcal (2) G-P(sol) polarization free energy of solvation -35.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds