Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47638 * 2 1 4 4 C 1.53001 * 109.46749 * 120.00503 * 2 1 3 5 5 N 1.46904 * 109.47008 * 174.99933 * 4 2 1 6 6 C 1.46906 * 110.99918 * 179.97438 * 5 4 2 7 7 C 1.50695 * 109.47048 * 179.97438 * 6 5 4 8 8 C 1.35451 * 126.77253 * 90.00354 * 7 6 5 9 9 C 1.41378 * 103.98546 * 179.97438 * 8 7 6 10 10 C 1.50708 * 126.80201 * 180.02562 * 9 8 7 11 11 C 1.52999 * 117.49801 * 343.73197 * 10 9 8 12 12 C 1.53002 * 117.49813 * 275.07198 * 10 9 8 13 13 N 1.30171 * 106.39621 * 0.02562 * 9 8 7 14 14 O 1.20923 * 111.60389 * 359.97438 * 13 9 8 15 15 N 1.46500 * 109.47217 * 239.99898 * 2 1 3 16 16 C 1.34776 * 119.99907 * 85.00144 * 15 2 1 17 17 O 1.21283 * 120.00084 * 0.02562 * 16 15 2 18 18 C 1.50705 * 119.99769 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46766 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99977 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99638 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00108 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99780 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99700 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47182 * 90.00440 * 24 22 20 26 26 H 1.48510 * 109.46671 * 209.99857 * 24 22 20 27 27 H 1.48491 * 109.47260 * 329.99788 * 24 22 20 28 28 H 1.09004 * 109.47389 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46990 * 299.99910 * 1 2 3 30 30 H 1.09000 * 109.46911 * 59.99697 * 1 2 3 31 31 H 1.08995 * 109.47972 * 54.99534 * 4 2 1 32 32 H 1.09002 * 109.46834 * 294.99361 * 4 2 1 33 33 H 1.00901 * 110.99935 * 56.04371 * 5 4 2 34 34 H 1.09002 * 109.46757 * 59.99897 * 6 5 4 35 35 H 1.08999 * 109.47452 * 300.00495 * 6 5 4 36 36 H 1.08005 * 128.00874 * 0.02562 * 8 7 6 37 37 H 1.08999 * 115.54934 * 129.40665 * 10 9 8 38 38 H 1.08998 * 117.49696 * 359.97438 * 11 10 9 39 39 H 1.08997 * 117.49815 * 145.02199 * 11 10 9 40 40 H 1.08996 * 117.50049 * 214.98522 * 12 10 9 41 41 H 1.08998 * 117.49849 * 359.97438 * 12 10 9 42 42 H 0.97006 * 120.00240 * 265.00701 * 15 2 1 43 43 H 1.09000 * 109.46975 * 300.00130 * 18 16 15 44 44 H 1.08990 * 109.46894 * 60.00349 * 18 16 15 45 45 H 0.96998 * 119.99609 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 3.5040 -0.8268 1.1904 6 6 4.0303 -1.5152 2.3768 7 6 5.5315 -1.6048 2.2808 8 6 6.4289 -0.7010 2.7418 9 6 7.6821 -1.2593 2.4006 10 6 9.0400 -0.6676 2.6790 11 6 9.1019 0.8159 3.0480 12 6 9.5876 0.3478 1.6740 13 7 7.4309 -2.3856 1.7983 14 8 6.2423 -2.5946 1.7226 15 7 2.0183 -0.6906 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8591 1.1586 -2.4115 18 6 2.6500 -0.7286 -3.5874 19 16 2.7115 0.4346 -4.9728 20 6 3.3145 -0.6306 -6.2402 21 1 3.5239 -1.6671 -6.0202 22 6 3.5215 -0.1375 -7.5211 23 7 3.9724 -0.9332 -8.4677 24 14 3.1600 1.6553 -7.9013 25 1 4.3791 2.4681 -7.6597 26 1 2.7510 1.7870 -9.3229 27 1 2.0626 2.1359 -7.0240 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6053 -1.7199 1.2952 32 1 1.7516 -0.1584 2.1369 33 1 3.9279 0.0824 1.0824 34 1 3.6094 -2.5192 2.4308 35 1 3.7557 -0.9575 3.2721 36 1 6.2325 0.2301 3.2526 37 1 9.7545 -1.3360 3.1593 38 1 8.1606 1.3640 3.0891 39 1 9.8575 1.1236 3.7709 40 1 10.6625 0.3476 1.4933 41 1 8.9661 0.5875 0.8112 42 1 2.2490 -1.6319 -1.1526 43 1 3.6493 -1.1204 -3.3977 44 1 1.9778 -1.5508 -3.8325 45 1 4.1174 -0.5885 -9.3627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732988650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = 21.393283 kcal Electronic energy + Delta-G solvation = -25961.459950 eV Core-core repulsion = 22108.230717 eV Total energy + Delta-G solvation = -3853.229232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.94171 -40.73062 -38.51301 -38.15193 -35.91187 -34.67877 -34.19631 -33.18870 -32.08970 -29.96754 -27.88456 -27.85096 -25.64131 -24.93456 -23.64494 -22.92897 -22.63811 -21.51823 -20.72888 -19.88175 -18.65286 -18.41940 -17.91687 -17.44048 -17.08904 -16.76951 -16.43873 -16.16830 -15.83193 -15.66724 -15.42342 -15.30314 -14.96427 -14.81230 -14.61982 -14.19003 -13.94016 -13.35344 -13.26501 -13.14014 -13.10377 -12.99868 -12.94142 -12.68501 -12.59326 -12.49744 -12.43295 -12.04495 -11.87171 -11.80024 -11.39010 -11.17580 -10.90395 -10.72269 -10.53800 -10.47792 -10.00603 -9.44053 -8.98869 -8.51956 -6.22425 0.44714 1.00436 1.17703 1.30954 1.46811 1.57497 1.66297 2.15680 2.24329 2.34684 2.68901 2.73173 2.86116 3.09103 3.20873 3.56984 3.81781 3.83224 3.97072 3.99875 4.07865 4.10049 4.18892 4.27283 4.32647 4.39191 4.46092 4.49316 4.61808 4.67173 4.69158 4.77223 4.81810 4.82826 4.92077 5.05784 5.08675 5.11176 5.17474 5.33327 5.61407 5.70304 5.91591 6.10887 6.25887 6.60377 6.92995 7.30964 7.31563 8.60856 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009150 B = 0.002583 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.468676 B =10838.819684 C =12824.802768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.142 3.858 3 H 0.066 0.934 4 C 0.064 3.936 5 N -0.700 5.700 6 C 0.144 3.856 7 C -0.022 4.022 8 C -0.223 4.223 9 C 0.035 3.965 10 C -0.107 4.107 11 C -0.139 4.139 12 C -0.173 4.173 13 N -0.399 5.399 14 O 0.090 5.910 15 N -0.694 5.694 16 C 0.537 3.463 17 O -0.566 6.566 18 C -0.112 4.112 19 S -0.172 6.172 20 C -0.530 4.530 21 H 0.059 0.941 22 C 0.043 3.957 23 N -0.919 5.919 24 Si 0.917 3.083 25 H -0.262 1.262 26 H -0.258 1.258 27 H -0.235 1.235 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.032 0.968 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.345 0.655 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.196 0.804 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.415 0.585 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.846 1.032 32.940 32.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.038 3.962 3 H 0.085 0.915 4 C -0.065 4.065 5 N -0.333 5.333 6 C 0.015 3.985 7 C -0.086 4.086 8 C -0.245 4.245 9 C -0.123 4.123 10 C -0.126 4.126 11 C -0.176 4.176 12 C -0.211 4.211 13 N -0.105 5.105 14 O 0.025 5.975 15 N -0.347 5.347 16 C 0.322 3.678 17 O -0.445 6.445 18 C -0.263 4.263 19 S 0.054 5.946 20 C -0.678 4.678 21 H 0.077 0.923 22 C -0.162 4.162 23 N -0.557 5.557 24 Si 0.739 3.261 25 H -0.187 1.187 26 H -0.182 1.182 27 H -0.159 1.159 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.164 0.836 34 H 0.128 0.872 35 H 0.115 0.885 36 H 0.213 0.787 37 H 0.142 0.858 38 H 0.125 0.875 39 H 0.143 0.857 40 H 0.133 0.867 41 H 0.099 0.901 42 H 0.251 0.749 43 H 0.122 0.878 44 H 0.127 0.873 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.158 1.370 31.776 31.827 hybrid contribution 0.439 -0.278 -0.075 0.525 sum 1.597 1.092 31.701 31.760 Atomic orbital electron populations 1.22105 0.94064 1.03125 1.02397 1.21091 0.94529 0.96708 0.83903 0.91545 1.22270 0.86359 1.02373 0.95488 1.60339 1.06247 1.26727 1.40004 1.20464 0.82074 1.02751 0.93185 1.24887 0.97725 0.88935 0.97059 1.22704 0.89875 1.03774 1.08190 1.23139 0.97715 0.92376 0.99029 1.20248 0.91643 0.93593 1.07124 1.23158 1.04320 0.92319 0.97789 1.23081 1.02253 1.01845 0.93949 1.73852 0.95627 1.20505 1.20482 1.84813 1.12070 1.41346 1.59319 1.45682 1.66485 1.14582 1.07957 1.19798 0.76868 0.86528 0.84593 1.90670 1.51274 1.17322 1.85245 1.23273 1.05661 1.02272 0.95086 1.84596 1.86895 1.18699 1.04404 1.22482 1.50176 0.98194 0.96901 0.92324 1.25612 0.93215 1.02491 0.94862 1.70026 1.44568 1.37837 1.03273 0.85831 0.81026 0.79705 0.79575 1.18707 1.18228 1.15903 0.90834 0.89319 0.94830 0.88144 0.90498 0.83647 0.87220 0.88475 0.78664 0.85766 0.87521 0.85680 0.86729 0.90074 0.74877 0.87784 0.87264 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.48 71.98 0.68 -1.79 16 2 C 0.14 2.41 2.82 44.99 0.13 2.53 16 3 H 0.07 1.43 7.58 -2.39 -0.02 1.41 16 4 C 0.06 0.54 5.24 86.30 0.45 0.99 16 5 N -0.70 -8.08 6.21 -517.92 -3.22 -11.30 16 6 C 0.14 1.19 6.25 85.55 0.53 1.73 16 7 C -0.02 -0.35 7.00 25.04 0.18 -0.17 16 8 C -0.22 -3.39 10.40 22.40 0.23 -3.15 16 9 C 0.04 0.73 6.95 43.58 0.30 1.04 16 10 C -0.11 -1.74 6.33 -11.54 -0.07 -1.81 16 11 C -0.14 -1.44 10.05 30.62 0.31 -1.13 16 12 C -0.17 -2.61 10.24 30.62 0.31 -2.30 16 13 N -0.40 -10.54 12.07 -49.56 -0.60 -11.14 16 14 O 0.09 2.12 11.20 71.69 0.80 2.92 16 15 N -0.69 -15.76 4.80 -442.53 -2.12 -17.89 16 16 C 0.54 18.46 7.81 87.66 0.68 19.15 16 17 O -0.57 -23.85 15.52 -3.04 -0.05 -23.90 16 18 C -0.11 -4.40 6.16 71.24 0.44 -3.96 16 19 S -0.17 -8.93 18.55 -56.49 -1.05 -9.98 16 20 C -0.53 -31.76 10.04 67.95 0.68 -31.08 16 21 H 0.06 3.73 8.03 -2.91 -0.02 3.70 16 22 C 0.04 2.60 5.50 84.86 0.47 3.07 16 23 N -0.92 -57.27 13.97 21.65 0.30 -56.96 16 24 Si 0.92 45.86 27.74 68.60 1.90 47.76 16 25 H -0.26 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 27 H -0.24 -11.69 6.74 99.48 0.67 -11.02 16 28 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.35 4.59 8.72 -89.69 -0.78 3.81 16 34 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.20 1.66 7.63 -2.91 -0.02 1.63 16 37 H 0.12 1.86 8.14 -2.39 -0.02 1.85 16 38 H 0.11 0.94 7.34 -2.39 -0.02 0.92 16 39 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.41 7.69 8.60 -92.70 -0.80 6.90 16 43 H 0.10 3.93 8.14 -2.40 -0.02 3.91 16 44 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 45 H 0.28 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -81.26 397.34 0.70 -80.56 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -0.60 Total: 16.80 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: 5.33 Total: -16.89 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -5.64 Total: -97.28 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.76 Total: -20.98 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.90 Total: 47.76 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.05 Total: -9.98 kcal Total: -81.26 0.70 -80.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732988650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.953 kcal (2) G-P(sol) polarization free energy of solvation -81.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds