Wall clock time and date at job start Sat Apr 11 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 N 1.46903 * 109.46973 * 174.99783 * 4 2 1 6 6 C 1.46908 * 110.99805 * 66.04621 * 5 4 2 7 7 C 1.46900 * 110.99859 * 190.00072 * 5 4 2 8 8 C 1.50701 * 109.46815 * 170.00257 * 7 5 4 9 9 O 1.21298 * 119.99925 * 359.97438 * 8 7 5 10 10 N 1.34776 * 120.00019 * 180.02562 * 8 7 5 11 11 C 1.37097 * 120.00200 * 180.02562 * 10 8 7 12 12 H 1.07995 * 119.99699 * 359.97438 * 11 10 8 13 13 C 1.38950 * 119.99714 * 179.97438 * 11 10 8 14 14 N 1.31410 * 120.00579 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99573 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46971 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.46996 * 119.99973 * 15 13 11 18 18 H 1.48500 * 109.47092 * 239.99724 * 15 13 11 19 19 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 20 20 C 1.34777 * 119.99828 * 84.72116 * 19 2 1 21 21 O 1.21283 * 120.00222 * 0.28168 * 20 19 2 22 22 C 1.50703 * 120.00290 * 180.27728 * 20 19 2 23 23 C 1.50701 * 109.47355 * 180.02562 * 22 20 19 24 24 C 1.33388 * 125.20004 * 90.00217 * 23 22 20 25 25 C 1.38418 * 114.91917 * 179.97438 * 24 23 22 26 26 C 1.33387 * 114.92369 * 359.97438 * 25 24 23 27 27 S 1.75877 * 125.20242 * 269.69462 * 23 22 20 28 28 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 30 30 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 31 31 H 1.08997 * 109.47038 * 294.99798 * 4 2 1 32 32 H 1.08999 * 109.47047 * 55.00424 * 4 2 1 33 33 H 1.09001 * 109.46734 * 59.99892 * 6 5 4 34 34 H 1.08993 * 109.46811 * 179.97438 * 6 5 4 35 35 H 1.08993 * 109.46886 * 300.00290 * 6 5 4 36 36 H 1.09000 * 109.46976 * 290.00072 * 7 5 4 37 37 H 1.09000 * 109.47181 * 50.00349 * 7 5 4 38 38 H 0.97005 * 119.99668 * 359.97438 * 10 8 7 39 39 H 0.96994 * 120.00131 * 179.97438 * 14 13 11 40 40 H 0.97001 * 120.00384 * 265.00562 * 19 2 1 41 41 H 1.08998 * 109.46954 * 300.00581 * 22 20 19 42 42 H 1.09002 * 109.46946 * 59.99717 * 22 20 19 43 43 H 1.08004 * 122.54098 * 359.95536 * 24 23 22 44 44 H 1.08003 * 122.54405 * 180.02562 * 25 24 23 45 45 H 1.08001 * 125.20479 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5041 -0.8267 1.1904 6 6 4.1311 0.4993 1.2719 7 6 4.0107 -1.7145 2.2454 8 6 5.4724 -1.9938 2.0077 9 8 6.0364 -1.5021 1.0530 10 7 6.1528 -2.7908 2.8554 11 6 7.4826 -3.0445 2.6395 12 1 7.9850 -2.6060 1.7899 13 6 8.1841 -3.8657 3.5137 14 7 7.5729 -4.3989 4.5477 15 14 9.9960 -4.2120 3.2191 16 1 10.4437 -3.4985 1.9961 17 1 10.7859 -3.7407 4.3849 18 1 10.1984 -5.6724 3.0418 19 7 2.0184 -0.6906 -1.1962 20 6 2.1417 -0.0196 -2.3585 21 8 1.8533 1.1572 -2.4129 22 6 2.6382 -0.7314 -3.5905 23 6 2.6842 0.2358 -4.7453 24 6 3.7328 0.9922 -5.0734 25 6 3.5422 1.8063 -6.1765 26 6 2.3392 1.7107 -6.7446 27 16 1.3663 0.5342 -5.8710 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2951 33 1 3.8524 0.9757 2.2119 34 1 5.2148 0.3921 1.2265 35 1 3.7911 1.1138 0.4384 36 1 3.8858 -1.2339 3.2157 37 1 3.4545 -2.6518 2.2298 38 1 5.7016 -3.1843 3.6186 39 1 8.0625 -4.9724 5.1577 40 1 2.2490 -1.6318 -1.1527 41 1 3.6381 -1.1236 -3.4054 42 1 1.9643 -1.5536 -3.8314 43 1 4.6601 0.9712 -4.5201 44 1 4.3098 2.4682 -6.5496 45 1 2.0137 2.2675 -7.6109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733026764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:16 Heat of formation + Delta-G solvation = -32.938884 kcal Electronic energy + Delta-G solvation = -26715.964002 eV Core-core repulsion = 22860.378750 eV Total energy + Delta-G solvation = -3855.585252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.94400 -38.66925 -37.81276 -36.89862 -34.68644 -33.78565 -32.52519 -31.27061 -30.78944 -28.01879 -27.17452 -26.91940 -24.83938 -23.62873 -22.63684 -21.01847 -20.28479 -19.32479 -19.17024 -17.86678 -17.37100 -17.12666 -16.24636 -16.02226 -15.55919 -15.35250 -14.92759 -14.74895 -14.66854 -14.03917 -13.90961 -13.61961 -13.47082 -13.16245 -13.10961 -12.84531 -12.65570 -12.43899 -12.41133 -12.12823 -12.02748 -11.82054 -11.63631 -11.51321 -11.37758 -11.26295 -10.95694 -10.85982 -10.72631 -10.36288 -10.24819 -9.85605 -9.50922 -8.98337 -8.74144 -8.52409 -8.48028 -8.00672 -7.89637 -6.44225 -3.84956 0.89527 1.54287 1.90201 2.65364 2.71600 3.14309 3.25199 3.29667 3.32254 3.87664 3.93465 4.22077 4.51609 4.73234 4.87719 4.94740 5.00993 5.05869 5.12765 5.20208 5.25421 5.35428 5.41962 5.49513 5.50608 5.51823 5.60465 5.69540 5.71916 5.92497 5.94663 5.96961 6.03757 6.07967 6.20264 6.25361 6.40213 6.53822 6.58117 7.21825 7.32824 7.53101 7.60621 8.04257 8.31268 8.59341 9.16046 9.52168 10.03864 10.73562 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.002359 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.209673 B =11866.389843 C =13403.802671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.087 0.913 4 C 0.042 3.958 5 N -0.514 5.514 6 C 0.021 3.979 7 C 0.045 3.955 8 C 0.444 3.556 9 O -0.577 6.577 10 N -0.565 5.565 11 C -0.297 4.297 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.928 3.072 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.281 1.281 19 N -0.705 5.705 20 C 0.518 3.482 21 O -0.539 6.539 22 C -0.074 4.074 23 C -0.150 4.150 24 C -0.130 4.130 25 C -0.130 4.130 26 C -0.218 4.218 27 S 0.097 5.903 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.014 0.986 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.405 0.595 41 H 0.117 0.883 42 H 0.102 0.898 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.326 6.545 -13.646 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.105 0.895 4 C -0.087 4.087 5 N -0.238 5.238 6 C -0.126 4.126 7 C -0.087 4.087 8 C 0.229 3.771 9 O -0.461 6.461 10 N -0.202 5.202 11 C -0.427 4.427 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.756 3.244 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.207 1.207 19 N -0.356 5.356 20 C 0.303 3.697 21 O -0.416 6.416 22 C -0.116 4.116 23 C -0.267 4.267 24 C -0.160 4.160 25 C -0.161 4.161 26 C -0.354 4.354 27 S 0.360 5.640 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.032 0.968 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.240 0.760 41 H 0.135 0.865 42 H 0.120 0.880 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.407 6.845 -14.800 23.132 hybrid contribution 1.955 -0.017 1.503 2.466 sum -14.452 6.828 -13.297 20.792 Atomic orbital electron populations 1.22150 0.95207 1.02149 1.02533 1.20916 0.93171 0.97664 0.83954 0.89512 1.22503 0.89257 1.00847 0.96062 1.61578 1.03100 1.12238 1.46880 1.22557 1.03007 0.88490 0.98577 1.21883 0.96380 0.97527 0.92876 1.19726 0.87672 0.84148 0.85519 1.90492 1.69996 1.54255 1.31322 1.41883 1.10409 1.42823 1.25056 1.19732 0.84908 1.27038 1.11007 0.87886 1.25259 1.00483 0.96743 0.95502 1.69614 1.37345 1.32948 1.14434 0.85815 0.82051 0.78115 0.78458 1.19215 1.20787 1.20750 1.45766 1.66762 1.14438 1.08677 1.20340 0.77601 0.87370 0.84386 1.90704 1.49927 1.15775 1.85180 1.20181 1.05028 0.96649 0.89696 1.23782 0.97135 1.04524 1.01281 1.20132 1.00043 0.97392 0.98402 1.20140 0.97501 1.01443 0.96980 1.25542 0.98154 1.05647 1.06010 1.84094 1.17796 1.38868 1.23244 0.92352 0.91734 0.91926 0.93594 0.90275 0.96784 0.88620 0.92107 0.93498 0.89450 0.77536 0.91933 0.75987 0.86486 0.88008 0.84214 0.84380 0.82119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 2 C 0.15 1.68 2.35 -67.93 -0.16 1.52 16 3 H 0.09 1.18 6.24 -51.93 -0.32 0.85 16 4 C 0.04 0.48 4.52 -3.82 -0.02 0.46 16 5 N -0.51 -7.83 4.22 -244.37 -1.03 -8.86 16 6 C 0.02 0.35 8.96 60.07 0.54 0.89 16 7 C 0.04 0.74 5.45 -4.98 -0.03 0.72 16 8 C 0.44 10.01 7.47 -10.99 -0.08 9.93 16 9 O -0.58 -14.89 13.91 5.54 0.08 -14.81 16 10 N -0.56 -13.87 5.29 -10.96 -0.06 -13.93 16 11 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 12 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 14 N -0.90 -24.15 13.05 55.50 0.72 -23.42 16 15 Si 0.93 20.75 29.55 -169.99 -5.02 15.72 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 19 N -0.71 -8.05 4.80 -53.81 -0.26 -8.30 16 20 C 0.52 6.66 7.78 -10.98 -0.09 6.57 16 21 O -0.54 -8.83 15.70 5.55 0.09 -8.74 16 22 C -0.07 -0.76 6.19 -29.03 -0.18 -0.94 16 23 C -0.15 -1.74 5.00 -36.00 -0.18 -1.92 16 24 C -0.13 -1.52 10.05 -41.21 -0.41 -1.94 16 25 C -0.13 -1.36 10.18 -41.21 -0.42 -1.78 16 26 C -0.22 -2.14 11.23 29.04 0.33 -1.81 16 27 S 0.10 1.02 23.33 -107.50 -2.51 -1.49 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 32 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 33 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.10 1.90 5.82 -51.93 -0.30 1.60 16 35 H 0.06 0.95 6.58 -51.93 -0.34 0.61 16 36 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 37 H 0.09 1.28 7.93 -51.93 -0.41 0.87 16 38 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 39 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.41 4.12 8.60 -40.82 -0.35 3.77 16 41 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.14 1.57 8.06 -52.48 -0.42 1.14 16 44 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 45 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 390.76 15.07 5.89 5.89 Total: -1.00 -32.73 390.76 -9.32 -42.05 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -6.62 Total: 13.15 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -0.59 Total: 2.76 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.62 Total: -54.52 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.16 Total: -23.55 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.51 Total: -1.49 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.73 -9.32 -42.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733026764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.110 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds