Wall clock time and date at job start Sat Apr 11 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 N 1.46903 * 109.46973 * 174.99783 * 4 2 1 6 6 C 1.46908 * 110.99805 * 66.04621 * 5 4 2 7 7 C 1.46900 * 110.99859 * 190.00072 * 5 4 2 8 8 C 1.50701 * 109.46815 * 170.00257 * 7 5 4 9 9 O 1.21298 * 119.99925 * 359.97438 * 8 7 5 10 10 N 1.34776 * 120.00019 * 180.02562 * 8 7 5 11 11 C 1.37097 * 120.00200 * 180.02562 * 10 8 7 12 12 H 1.07995 * 119.99699 * 359.97438 * 11 10 8 13 13 C 1.38950 * 119.99714 * 179.97438 * 11 10 8 14 14 N 1.31410 * 120.00579 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99573 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46971 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.46996 * 119.99973 * 15 13 11 18 18 H 1.48500 * 109.47092 * 239.99724 * 15 13 11 19 19 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 20 20 C 1.34777 * 119.99828 * 84.72116 * 19 2 1 21 21 O 1.21283 * 120.00222 * 0.28168 * 20 19 2 22 22 C 1.50703 * 120.00290 * 180.27728 * 20 19 2 23 23 C 1.50701 * 109.47355 * 180.02562 * 22 20 19 24 24 C 1.33388 * 125.20004 * 90.00217 * 23 22 20 25 25 C 1.38418 * 114.91917 * 179.97438 * 24 23 22 26 26 C 1.33387 * 114.92369 * 359.97438 * 25 24 23 27 27 S 1.75877 * 125.20242 * 269.69462 * 23 22 20 28 28 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 30 30 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 31 31 H 1.08997 * 109.47038 * 294.99798 * 4 2 1 32 32 H 1.08999 * 109.47047 * 55.00424 * 4 2 1 33 33 H 1.09001 * 109.46734 * 59.99892 * 6 5 4 34 34 H 1.08993 * 109.46811 * 179.97438 * 6 5 4 35 35 H 1.08993 * 109.46886 * 300.00290 * 6 5 4 36 36 H 1.09000 * 109.46976 * 290.00072 * 7 5 4 37 37 H 1.09000 * 109.47181 * 50.00349 * 7 5 4 38 38 H 0.97005 * 119.99668 * 359.97438 * 10 8 7 39 39 H 0.96994 * 120.00131 * 179.97438 * 14 13 11 40 40 H 0.97001 * 120.00384 * 265.00562 * 19 2 1 41 41 H 1.08998 * 109.46954 * 300.00581 * 22 20 19 42 42 H 1.09002 * 109.46946 * 59.99717 * 22 20 19 43 43 H 1.08004 * 122.54098 * 359.95536 * 24 23 22 44 44 H 1.08003 * 122.54405 * 180.02562 * 25 24 23 45 45 H 1.08001 * 125.20479 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5041 -0.8267 1.1904 6 6 4.1311 0.4993 1.2719 7 6 4.0107 -1.7145 2.2454 8 6 5.4724 -1.9938 2.0077 9 8 6.0364 -1.5021 1.0530 10 7 6.1528 -2.7908 2.8554 11 6 7.4826 -3.0445 2.6395 12 1 7.9850 -2.6060 1.7899 13 6 8.1841 -3.8657 3.5137 14 7 7.5729 -4.3989 4.5477 15 14 9.9960 -4.2120 3.2191 16 1 10.4437 -3.4985 1.9961 17 1 10.7859 -3.7407 4.3849 18 1 10.1984 -5.6724 3.0418 19 7 2.0184 -0.6906 -1.1962 20 6 2.1417 -0.0196 -2.3585 21 8 1.8533 1.1572 -2.4129 22 6 2.6382 -0.7314 -3.5905 23 6 2.6842 0.2358 -4.7453 24 6 3.7328 0.9922 -5.0734 25 6 3.5422 1.8063 -6.1765 26 6 2.3392 1.7107 -6.7446 27 16 1.3663 0.5342 -5.8710 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2951 33 1 3.8524 0.9757 2.2119 34 1 5.2148 0.3921 1.2265 35 1 3.7911 1.1138 0.4384 36 1 3.8858 -1.2339 3.2157 37 1 3.4545 -2.6518 2.2298 38 1 5.7016 -3.1843 3.6186 39 1 8.0625 -4.9724 5.1577 40 1 2.2490 -1.6318 -1.1527 41 1 3.6381 -1.1236 -3.4054 42 1 1.9643 -1.5536 -3.8314 43 1 4.6601 0.9712 -4.5201 44 1 4.3098 2.4682 -6.5496 45 1 2.0137 2.2675 -7.6109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733026764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:16 Heat of formation + Delta-G solvation = -56.166066 kcal Electronic energy + Delta-G solvation = -26716.971208 eV Core-core repulsion = 22860.378750 eV Total energy + Delta-G solvation = -3856.592458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.96647 -40.26280 -38.75229 -38.12122 -36.08317 -35.46991 -33.42348 -33.23618 -31.69640 -29.47356 -28.01092 -27.99085 -26.63447 -24.54066 -23.81628 -22.00363 -21.26311 -20.92953 -20.14829 -19.82176 -18.32569 -18.04664 -17.69422 -17.07746 -16.66497 -16.53626 -16.37618 -16.09090 -15.95227 -15.57365 -15.13827 -15.09247 -14.72367 -14.22172 -14.02938 -13.81974 -13.63347 -13.51474 -13.47729 -13.26836 -13.24160 -13.08890 -12.87472 -12.74716 -12.64765 -12.44453 -12.41701 -12.36002 -12.11208 -11.71211 -11.67646 -11.43802 -10.90123 -10.24647 -9.96456 -9.94039 -9.57151 -9.34148 -9.20230 -8.44440 -5.92110 0.06917 0.73853 1.09115 1.37212 1.42707 1.56142 1.72486 1.81648 2.10251 2.29162 2.40151 2.77932 3.23106 3.45659 3.67310 3.80275 4.03850 4.18375 4.22120 4.24237 4.26955 4.36478 4.44194 4.54823 4.55423 4.56651 4.60363 4.70939 4.72523 4.74102 4.80946 4.83538 5.06348 5.18115 5.21442 5.30517 5.39185 5.43855 5.58136 5.62963 5.89391 6.07372 6.20105 6.64352 6.67776 7.16898 7.36184 7.61295 8.17528 8.73136 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.002359 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.209673 B =11866.389843 C =13403.802671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.149 3.851 3 H 0.061 0.939 4 C 0.047 3.953 5 N -0.526 5.526 6 C 0.032 3.968 7 C 0.058 3.942 8 C 0.442 3.558 9 O -0.613 6.613 10 N -0.577 5.577 11 C -0.327 4.327 12 H 0.077 0.923 13 C -0.014 4.014 14 N -0.921 5.921 15 Si 0.989 3.011 16 H -0.274 1.274 17 H -0.273 1.273 18 H -0.271 1.271 19 N -0.699 5.699 20 C 0.514 3.486 21 O -0.579 6.579 22 C -0.071 4.071 23 C -0.168 4.168 24 C -0.148 4.148 25 C -0.145 4.145 26 C -0.215 4.215 27 S 0.098 5.902 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.029 0.971 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.118 0.882 38 H 0.396 0.604 39 H 0.276 0.724 40 H 0.413 0.587 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.136 0.864 44 H 0.156 0.844 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.721 5.766 -13.461 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 H 0.079 0.921 4 C -0.080 4.080 5 N -0.250 5.250 6 C -0.116 4.116 7 C -0.073 4.073 8 C 0.230 3.770 9 O -0.499 6.499 10 N -0.214 5.214 11 C -0.457 4.457 12 H 0.095 0.905 13 C -0.213 4.213 14 N -0.562 5.562 15 Si 0.813 3.187 16 H -0.199 1.199 17 H -0.199 1.199 18 H -0.196 1.196 19 N -0.350 5.350 20 C 0.301 3.699 21 O -0.460 6.460 22 C -0.112 4.112 23 C -0.286 4.286 24 C -0.178 4.178 25 C -0.175 4.175 26 C -0.351 4.351 27 S 0.362 5.638 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.230 0.770 39 H 0.086 0.914 40 H 0.249 0.751 41 H 0.140 0.860 42 H 0.146 0.854 43 H 0.153 0.847 44 H 0.174 0.826 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -17.828 6.039 -14.592 23.817 hybrid contribution 2.340 0.286 1.410 2.747 sum -15.488 6.325 -13.182 21.299 Atomic orbital electron populations 1.22056 0.93316 1.03265 1.02415 1.20925 0.94520 0.96289 0.83940 0.92118 1.22581 0.86338 1.02616 0.96493 1.61499 1.05503 1.11354 1.46685 1.22325 1.00462 0.89447 0.99386 1.21766 0.92107 0.99444 0.94025 1.20822 0.89979 0.82151 0.84057 1.90480 1.71616 1.55086 1.32739 1.41947 1.09851 1.43813 1.25819 1.19638 0.86565 1.28375 1.11084 0.90478 1.25975 1.04170 0.96114 0.95063 1.69667 1.38706 1.33099 1.14762 0.84927 0.77384 0.78221 0.78159 1.19895 1.19852 1.19635 1.45785 1.66068 1.14729 1.08435 1.20741 0.76941 0.86961 0.85269 1.90680 1.51884 1.17528 1.85860 1.20228 1.05790 0.96884 0.88321 1.24021 0.97580 1.04996 1.01965 1.20346 1.00208 0.98097 0.99182 1.20370 0.98448 1.01810 0.96851 1.25911 0.97630 1.05149 1.06391 1.84012 1.17597 1.39201 1.23010 0.90547 0.90249 0.93673 0.91926 0.87724 0.95268 0.92726 0.92144 0.91643 0.86422 0.77048 0.91426 0.75083 0.86024 0.85400 0.84662 0.82622 0.79527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.48 71.98 0.68 -1.83 16 2 C 0.15 3.12 2.35 44.99 0.11 3.23 16 3 H 0.06 1.62 6.24 -2.39 -0.01 1.61 16 4 C 0.05 0.93 4.52 86.30 0.39 1.32 16 5 N -0.53 -15.11 4.22 -927.03 -3.92 -19.02 16 6 C 0.03 1.03 8.96 127.69 1.14 2.18 16 7 C 0.06 1.79 5.45 85.56 0.47 2.26 16 8 C 0.44 19.96 7.47 87.66 0.66 20.61 16 9 O -0.61 -32.48 13.91 -3.09 -0.04 -32.52 16 10 N -0.58 -28.52 5.29 -306.98 -1.62 -30.14 16 11 C -0.33 -18.16 9.68 84.04 0.81 -17.34 16 12 H 0.08 4.61 7.16 -2.91 -0.02 4.58 16 13 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 14 N -0.92 -48.86 13.05 21.66 0.28 -48.57 16 15 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 18 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 19 N -0.70 -15.15 4.80 -442.53 -2.12 -17.28 16 20 C 0.51 13.14 7.78 87.66 0.68 13.83 16 21 O -0.58 -19.34 15.70 -3.04 -0.05 -19.38 16 22 C -0.07 -1.44 6.19 29.10 0.18 -1.26 16 23 C -0.17 -3.91 5.00 24.59 0.12 -3.79 16 24 C -0.15 -3.54 10.05 21.21 0.21 -3.32 16 25 C -0.14 -2.96 10.18 21.21 0.22 -2.74 16 26 C -0.22 -4.00 11.23 66.72 0.75 -3.25 16 27 S 0.10 2.01 23.33 -56.49 -1.32 0.69 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.09 8.12 -2.39 -0.02 1.07 16 32 H 0.10 1.59 7.93 -2.39 -0.02 1.57 16 33 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 2.23 5.82 -2.39 -0.01 2.21 16 35 H 0.06 1.92 6.58 -2.39 -0.02 1.91 16 36 H 0.07 1.85 8.12 -2.39 -0.02 1.83 16 37 H 0.12 3.01 7.93 -2.39 -0.02 2.99 16 38 H 0.40 18.55 7.90 -92.70 -0.73 17.82 16 39 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 40 H 0.41 7.65 8.60 -92.71 -0.80 6.85 16 41 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 44 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 45 H 0.19 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -72.72 390.76 -0.38 -73.10 By element: Atomic # 1 Polarization: 39.48 SS G_CDS: -0.51 Total: 38.98 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 6.89 Total: 9.64 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -7.38 Total: -115.01 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -0.09 Total: -51.90 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.32 Total: 0.69 kcal Total: -72.72 -0.38 -73.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733026764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.931 kcal (2) G-P(sol) polarization free energy of solvation -72.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds