Wall clock time and date at job start Sat Apr 11 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.46966 * 2 1 4 4 C 1.52997 * 109.46572 * 240.00480 * 2 1 3 5 5 N 1.46505 * 109.46971 * 185.00183 * 4 2 1 6 6 C 1.46500 * 120.00095 * 89.99885 * 5 4 2 7 7 C 1.36941 * 119.99571 * 269.72488 * 5 4 2 8 8 H 1.07991 * 120.00376 * 334.94731 * 7 5 4 9 9 C 1.38812 * 119.99791 * 154.95245 * 7 5 4 10 10 N 1.31618 * 119.99897 * 4.10246 * 9 7 5 11 11 Si 1.86799 * 120.00144 * 184.10166 * 9 7 5 12 12 H 1.48502 * 109.46732 * 89.99958 * 11 9 7 13 13 H 1.48494 * 109.47194 * 210.00022 * 11 9 7 14 14 H 1.48500 * 109.46910 * 329.99979 * 11 9 7 15 15 N 1.46499 * 109.47163 * 120.00650 * 2 1 3 16 16 C 1.34778 * 119.99776 * 274.99705 * 15 2 1 17 17 O 1.21682 * 120.00296 * 0.02562 * 16 15 2 18 18 C 1.46684 * 119.99700 * 180.02562 * 16 15 2 19 19 C 1.35669 * 126.13104 * 359.68611 * 18 16 15 20 20 N 1.30943 * 114.18569 * 179.82784 * 19 18 16 21 21 C 1.29430 * 117.36888 * 0.48123 * 20 19 18 22 22 C 1.50699 * 124.80309 * 179.76820 * 21 20 19 23 23 H 1.09005 * 109.86518 * 164.26227 * 22 21 20 24 24 C 1.54099 * 109.87877 * 285.26208 * 22 21 20 25 25 C 1.54818 * 104.18575 * 121.45749 * 24 22 21 26 26 C 1.54991 * 102.08937 * 20.87859 * 25 24 22 27 27 O 1.43740 * 109.87955 * 43.25490 * 22 21 20 28 28 S 1.70948 * 110.38892 * 359.73468 * 21 20 19 29 29 H 1.08994 * 109.46966 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46664 * 299.99383 * 1 2 3 31 31 H 1.08997 * 109.47235 * 59.99427 * 1 2 3 32 32 H 1.09001 * 109.47783 * 65.00223 * 4 2 1 33 33 H 1.09005 * 109.47418 * 304.99890 * 4 2 1 34 34 H 1.08998 * 109.47047 * 264.21367 * 6 5 4 35 35 H 1.08997 * 109.47078 * 24.21691 * 6 5 4 36 36 H 1.08995 * 109.47103 * 144.21591 * 6 5 4 37 37 H 0.97007 * 119.99792 * 180.02562 * 10 9 7 38 38 H 0.97003 * 120.00084 * 94.99804 * 15 2 1 39 39 H 1.07998 * 122.90012 * 0.02562 * 19 18 16 40 40 H 1.08993 * 110.49331 * 240.13533 * 24 22 21 41 41 H 1.09004 * 110.48927 * 2.78804 * 24 22 21 42 42 H 1.08996 * 110.90908 * 139.08118 * 25 24 22 43 43 H 1.09004 * 110.90390 * 262.65074 * 25 24 22 44 44 H 1.09000 * 110.61492 * 81.48280 * 26 25 24 45 45 H 1.09001 * 110.62255 * 204.47176 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1258 -1.9920 -0.5615 7 6 4.2798 0.1622 -1.7291 8 1 3.8912 0.7858 -2.5206 9 6 5.5699 0.3627 -1.2577 10 7 6.0724 -0.4478 -0.3505 11 14 6.5929 1.7827 -1.9107 12 1 6.3648 2.9850 -1.0694 13 1 8.0313 1.4161 -1.8707 14 1 6.1956 2.0760 -3.3112 15 7 2.0184 -0.6907 1.1961 16 6 2.1472 -0.0185 2.3571 17 8 1.8574 1.1621 2.4120 18 6 2.6367 -0.7099 3.5545 19 6 2.9882 -2.0178 3.6355 20 7 3.3981 -2.3906 4.8219 21 6 3.4105 -1.4947 5.7559 22 6 3.8442 -1.7407 7.1780 23 1 4.0260 -0.7901 7.6796 24 6 2.7540 -2.5293 7.9293 25 6 3.4748 -3.8144 8.4045 26 6 4.9638 -3.3861 8.3619 27 8 5.0400 -2.5381 7.1934 28 16 2.8662 0.0073 5.1477 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.7516 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2953 34 1 4.3735 -1.7569 0.4736 35 1 3.4340 -2.8340 -0.5873 36 1 5.0354 -2.2524 -1.1026 37 1 6.9739 -0.3074 -0.0208 38 1 2.2491 -1.6319 1.1524 39 1 2.9374 -2.6921 2.7934 40 1 2.3899 -1.9582 8.7832 41 1 1.9325 -2.7789 7.2578 42 1 3.1743 -4.0765 9.4189 43 1 3.2876 -4.6413 7.7194 44 1 5.2276 -2.8254 9.2585 45 1 5.6104 -4.2562 8.2480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733056862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:19 Heat of formation + Delta-G solvation = -7.590374 kcal Electronic energy + Delta-G solvation = -27535.154842 eV Core-core repulsion = 23680.668785 eV Total energy + Delta-G solvation = -3854.486058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.29172 -39.46688 -38.56439 -36.34228 -34.05919 -32.55882 -32.02134 -31.07130 -30.26876 -28.57576 -26.16724 -25.68190 -25.51839 -23.18876 -22.33288 -21.77644 -21.15707 -20.22241 -19.31996 -18.33124 -17.16139 -16.83056 -16.58123 -15.85907 -15.44067 -15.29701 -14.96971 -14.80707 -14.17572 -14.07693 -13.90616 -13.63884 -13.57382 -13.39598 -13.09721 -12.89006 -12.18890 -12.07183 -12.05092 -11.86282 -11.55142 -11.51436 -11.37363 -11.16523 -11.11239 -10.82944 -10.77623 -10.54506 -10.18404 -10.14554 -10.02616 -9.95001 -9.85945 -9.37757 -9.33232 -8.90395 -8.58767 -8.40525 -6.74444 -5.73133 -3.19348 0.31622 1.16094 1.70635 2.58308 3.40785 3.46747 3.47894 3.50475 3.69076 3.76235 3.87950 4.30710 4.48781 4.51077 4.57285 4.75934 4.94085 5.07675 5.16802 5.30189 5.31896 5.38145 5.41098 5.46658 5.52840 5.63391 5.65201 5.77209 5.82082 5.97181 6.05587 6.08607 6.21095 6.44937 6.50475 6.54290 6.66410 6.83602 7.06828 7.42426 7.68502 7.72642 7.83688 7.95832 8.41528 8.62855 9.25523 9.85763 10.34119 11.31754 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013071 B = 0.003259 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.658937 B = 8590.212227 C = 9549.799566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.088 0.912 4 C 0.143 3.857 5 N -0.601 5.601 6 C 0.164 3.836 7 C -0.258 4.258 8 H 0.069 0.931 9 C 0.009 3.991 10 N -0.905 5.905 11 Si 0.902 3.098 12 H -0.287 1.287 13 H -0.291 1.291 14 H -0.280 1.280 15 N -0.683 5.683 16 C 0.594 3.406 17 O -0.546 6.546 18 C -0.270 4.270 19 C 0.089 3.911 20 N -0.450 5.450 21 C 0.021 3.979 22 C 0.158 3.842 23 H 0.091 0.909 24 C -0.142 4.142 25 C -0.151 4.151 26 C 0.045 3.955 27 O -0.351 6.351 28 S 0.229 5.771 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.026 0.974 35 H -0.011 1.011 36 H 0.054 0.946 37 H 0.252 0.748 38 H 0.396 0.604 39 H 0.181 0.819 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.297 -6.608 17.138 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.106 0.894 4 C 0.015 3.985 5 N -0.323 5.323 6 C 0.019 3.981 7 C -0.387 4.387 8 H 0.086 0.914 9 C -0.189 4.189 10 N -0.550 5.550 11 Si 0.731 3.269 12 H -0.214 1.214 13 H -0.217 1.217 14 H -0.205 1.205 15 N -0.332 5.332 16 C 0.379 3.621 17 O -0.425 6.425 18 C -0.395 4.395 19 C -0.069 4.069 20 N -0.164 5.164 21 C -0.254 4.254 22 C 0.096 3.904 23 H 0.109 0.891 24 C -0.182 4.182 25 C -0.188 4.188 26 C -0.032 4.032 27 O -0.269 6.269 28 S 0.486 5.514 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.007 0.993 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.231 0.769 39 H 0.198 0.802 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.080 -5.286 17.645 20.536 hybrid contribution 0.754 -0.246 -0.961 1.246 sum -8.326 -5.532 16.684 19.450 Atomic orbital electron populations 1.22156 0.96596 1.01243 1.01839 1.21985 0.91840 0.99265 0.85894 0.89372 1.21202 0.85877 0.97271 0.94176 1.43865 0.98968 1.21450 1.68041 1.20943 0.94661 0.84743 0.97717 1.19161 0.95645 1.10320 1.13614 0.91373 1.25125 0.98456 0.98053 0.97259 1.70052 1.15886 1.37106 1.31948 0.86305 0.79418 0.82813 0.78322 1.21369 1.21731 1.20539 1.45581 1.65212 1.13692 1.08684 1.16593 0.77715 0.85924 0.81911 1.90792 1.51682 1.14918 1.85153 1.25963 1.14910 0.98838 0.99782 1.22191 0.96533 0.93004 0.95180 1.65982 1.15547 1.35137 0.99771 1.27288 1.04198 0.93750 1.00138 1.21141 0.86213 0.95958 0.87064 0.89146 1.22983 0.98440 0.96478 1.00276 1.23111 0.95255 0.98166 1.02300 1.23646 0.96685 0.94359 0.88514 1.89093 1.37736 1.54544 1.45575 1.83846 1.56447 1.10980 1.00093 0.93070 0.92918 0.91852 0.92084 0.93955 0.95530 0.99303 0.92743 0.93768 0.76887 0.80188 0.89743 0.89833 0.89986 0.89962 0.91905 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.48 37.16 0.35 -2.00 16 2 C 0.12 2.18 2.88 -67.93 -0.20 1.98 16 3 H 0.09 1.97 7.58 -51.93 -0.39 1.57 16 4 C 0.14 2.74 5.33 -4.04 -0.02 2.72 16 5 N -0.60 -14.44 2.79 -181.12 -0.50 -14.95 16 6 C 0.16 3.85 7.55 59.85 0.45 4.30 16 7 C -0.26 -7.01 9.67 -15.06 -0.15 -7.16 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 C 0.01 0.27 5.38 -17.43 -0.09 0.17 16 10 N -0.91 -26.33 10.12 55.49 0.56 -25.77 16 11 Si 0.90 22.38 29.56 -169.99 -5.02 17.35 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 N -0.68 -12.55 4.42 -55.11 -0.24 -12.79 16 16 C 0.59 11.74 7.75 -12.85 -0.10 11.64 16 17 O -0.55 -12.35 16.63 5.21 0.09 -12.26 16 18 C -0.27 -4.66 6.48 -37.09 -0.24 -4.90 16 19 C 0.09 1.42 10.93 -18.85 -0.21 1.21 16 20 N -0.45 -7.13 10.48 -11.50 -0.12 -7.25 16 21 C 0.02 0.30 6.08 -13.29 -0.08 0.22 16 22 C 0.16 1.74 3.93 -27.31 -0.11 1.63 16 23 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 24 C -0.14 -1.16 6.63 -25.20 -0.17 -1.32 16 25 C -0.15 -1.09 7.16 -24.72 -0.18 -1.26 16 26 C 0.04 0.37 7.72 38.21 0.29 0.67 16 27 O -0.35 -4.52 11.17 -35.23 -0.39 -4.92 16 28 S 0.23 3.31 23.01 -107.50 -2.47 0.84 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 1.13 8.03 -51.93 -0.42 0.72 16 33 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 34 H 0.03 0.67 7.05 -51.93 -0.37 0.30 16 35 H -0.01 -0.23 7.83 -51.93 -0.41 -0.63 16 36 H 0.05 1.43 7.03 -51.93 -0.36 1.07 16 37 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.40 6.67 5.91 -40.82 -0.24 6.43 16 39 H 0.18 2.55 7.15 -52.49 -0.38 2.17 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.75 7.69 -51.93 -0.40 0.35 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -34.05 382.00 -9.51 -43.56 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.72 Total: 2.53 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.44 Total: 7.90 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.31 Total: -60.76 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.31 Total: -17.18 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -2.47 Total: 0.84 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.05 -9.51 -43.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733056862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.969 kcal (2) G-P(sol) polarization free energy of solvation -34.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds