Wall clock time and date at job start Sat Apr 11 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47352 * 2 1 4 4 C 1.53005 * 109.47090 * 240.00065 * 2 1 3 5 5 N 1.46492 * 109.47012 * 184.99922 * 4 2 1 6 6 C 1.46504 * 120.00045 * 90.00508 * 5 4 2 7 7 C 1.36942 * 120.00400 * 269.99609 * 5 4 2 8 8 H 1.08003 * 120.00088 * 142.15298 * 7 5 4 9 9 C 1.38809 * 119.99879 * 322.16282 * 7 5 4 10 10 N 1.31612 * 120.00430 * 156.07414 * 9 7 5 11 11 Si 1.86812 * 119.99901 * 336.07333 * 9 7 5 12 12 H 1.48494 * 109.46823 * 95.16216 * 11 9 7 13 13 H 1.48501 * 109.47024 * 215.16186 * 11 9 7 14 14 H 1.48492 * 109.46730 * 335.16399 * 11 9 7 15 15 N 1.46500 * 109.47386 * 120.00157 * 2 1 3 16 16 C 1.34779 * 120.00006 * 275.00266 * 15 2 1 17 17 O 1.21688 * 119.99596 * 359.97438 * 16 15 2 18 18 C 1.46677 * 119.99973 * 179.72787 * 16 15 2 19 19 C 1.35659 * 126.13491 * 0.28786 * 18 16 15 20 20 N 1.30939 * 114.19814 * 180.02562 * 19 18 16 21 21 C 1.29434 * 117.35839 * 0.02562 * 20 19 18 22 22 C 1.50706 * 124.80124 * 180.02562 * 21 20 19 23 23 H 1.08996 * 110.32827 * 197.22650 * 22 21 20 24 24 C 1.54474 * 110.37430 * 74.97141 * 22 21 20 25 25 C 1.54506 * 104.06685 * 217.19056 * 24 22 21 26 26 C 1.54487 * 104.05987 * 359.97438 * 25 24 22 27 27 O 1.44423 * 110.37105 * 319.58970 * 22 21 20 28 28 S 1.70948 * 110.39072 * 359.72246 * 21 20 19 29 29 H 1.08999 * 109.47331 * 60.00209 * 1 2 3 30 30 H 1.08999 * 109.47352 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47115 * 299.99778 * 1 2 3 32 32 H 1.08998 * 109.46738 * 304.99950 * 4 2 1 33 33 H 1.08997 * 109.46906 * 64.99742 * 4 2 1 34 34 H 1.08995 * 109.47447 * 95.53890 * 6 5 4 35 35 H 1.09002 * 109.46699 * 215.54038 * 6 5 4 36 36 H 1.08999 * 109.47052 * 335.53269 * 6 5 4 37 37 H 0.97003 * 120.00428 * 180.02562 * 10 9 7 38 38 H 0.97000 * 119.99860 * 94.99414 * 15 2 1 39 39 H 1.08004 * 122.90102 * 0.04586 * 19 18 16 40 40 H 1.09002 * 110.51245 * 335.83436 * 24 22 21 41 41 H 1.09000 * 110.51064 * 98.40795 * 24 22 21 42 42 H 1.09000 * 110.51574 * 118.64112 * 25 24 22 43 43 H 1.08994 * 110.51000 * 241.22302 * 25 24 22 44 44 H 1.09001 * 110.36863 * 142.80853 * 26 25 24 45 45 H 1.08995 * 110.37389 * 265.03504 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1258 -1.9920 -0.5613 7 6 4.2799 0.1648 -1.7241 8 1 5.1938 0.4582 -1.2291 9 6 3.8956 0.7926 -2.9010 10 7 4.3315 2.0042 -3.1733 11 14 2.7597 -0.0824 -4.0985 12 1 1.3566 0.3300 -3.8410 13 1 3.1343 0.2782 -5.4895 14 1 2.8854 -1.5508 -3.9168 15 7 2.0184 -0.6906 1.1961 16 6 2.1471 -0.0183 2.3571 17 8 1.8580 1.1625 2.4116 18 6 2.6304 -0.7112 3.5562 19 6 2.9868 -2.0177 3.6361 20 7 3.3855 -2.3935 4.8254 21 6 3.3923 -1.4988 5.7607 22 6 3.8182 -1.7467 7.1849 23 1 3.4551 -0.9490 7.8330 24 6 5.3565 -1.8547 7.2751 25 6 5.5943 -2.9529 8.3356 26 6 4.1713 -3.3780 8.7612 27 8 3.3310 -3.0279 7.6397 28 16 2.8578 0.0056 5.1498 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7198 -1.2951 33 1 1.7516 -0.1583 -2.1370 34 1 4.3719 -2.7291 -1.3256 35 1 5.0363 -1.6827 -0.0482 36 1 3.4347 -2.4313 0.1581 37 1 4.0627 2.4430 -3.9956 38 1 2.2490 -1.6318 1.1525 39 1 2.9456 -2.6898 2.7916 40 1 5.7754 -2.1545 6.3145 41 1 5.7875 -0.9077 7.5998 42 1 6.1306 -3.7956 7.8993 43 1 6.1446 -2.5501 9.1858 44 1 4.1344 -4.4524 8.9417 45 1 3.8635 -2.8333 9.6536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733056863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:21 Heat of formation + Delta-G solvation = -3.013373 kcal Electronic energy + Delta-G solvation = -27268.505231 eV Core-core repulsion = 23414.217647 eV Total energy + Delta-G solvation = -3854.287584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.44851 -39.64550 -38.77849 -36.66289 -34.10463 -32.63880 -32.13160 -31.52796 -30.72285 -28.74803 -26.72118 -25.86903 -25.65133 -23.41732 -22.40014 -21.74134 -21.25661 -20.58957 -19.54159 -18.55691 -17.44526 -16.87726 -16.59415 -16.01501 -15.65615 -15.47873 -15.21899 -14.95636 -14.48317 -14.37755 -14.12680 -13.92504 -13.70624 -13.43356 -13.15874 -12.99107 -12.66104 -12.22699 -12.16820 -12.04435 -11.95600 -11.74062 -11.71641 -11.58254 -11.37727 -11.10910 -10.88622 -10.59670 -10.33306 -10.30753 -10.27545 -10.03437 -9.66099 -9.56097 -9.51306 -9.10851 -8.72178 -8.51038 -6.88007 -6.03677 -3.45137 0.10836 0.94913 1.50866 2.37361 3.24846 3.35055 3.41197 3.45626 3.47959 3.57160 3.75723 4.23981 4.36765 4.46850 4.47080 4.63977 4.79162 4.85034 4.93300 4.96420 5.14053 5.17986 5.29990 5.31655 5.41057 5.50346 5.57681 5.66061 5.72605 5.81132 5.82755 5.97004 6.01505 6.15519 6.31425 6.34625 6.43341 6.53744 6.61361 6.76385 6.91980 7.47957 7.76150 7.99311 8.33901 8.44056 8.91699 9.65405 10.04161 11.11852 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020952 B = 0.002655 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.095795 B =10543.062594 C =10916.576680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.122 3.878 3 H 0.098 0.902 4 C 0.130 3.870 5 N -0.607 5.607 6 C 0.128 3.872 7 C -0.271 4.271 8 H 0.077 0.923 9 C 0.037 3.963 10 N -0.894 5.894 11 Si 0.873 3.127 12 H -0.284 1.284 13 H -0.299 1.299 14 H -0.269 1.269 15 N -0.690 5.690 16 C 0.590 3.410 17 O -0.537 6.537 18 C -0.275 4.275 19 C 0.085 3.915 20 N -0.450 5.450 21 C 0.025 3.975 22 C 0.155 3.845 23 H 0.092 0.908 24 C -0.144 4.144 25 C -0.152 4.152 26 C 0.043 3.957 27 O -0.350 6.350 28 S 0.241 5.759 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.012 0.988 35 H 0.040 0.960 36 H 0.023 0.977 37 H 0.264 0.736 38 H 0.394 0.606 39 H 0.181 0.819 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.373 -9.941 22.780 24.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.015 3.985 3 H 0.116 0.884 4 C 0.003 3.997 5 N -0.331 5.331 6 C -0.018 4.018 7 C -0.399 4.399 8 H 0.095 0.905 9 C -0.164 4.164 10 N -0.534 5.534 11 Si 0.702 3.298 12 H -0.212 1.212 13 H -0.227 1.227 14 H -0.194 1.194 15 N -0.341 5.341 16 C 0.374 3.626 17 O -0.415 6.415 18 C -0.400 4.400 19 C -0.074 4.074 20 N -0.165 5.165 21 C -0.249 4.249 22 C 0.093 3.907 23 H 0.110 0.890 24 C -0.183 4.183 25 C -0.190 4.190 26 C -0.034 4.034 27 O -0.268 6.268 28 S 0.500 5.500 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.030 0.970 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.230 0.770 39 H 0.198 0.802 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.114 0.886 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.681 -8.600 23.189 24.877 hybrid contribution -0.332 -1.399 -1.588 2.142 sum -3.013 -9.999 21.601 23.993 Atomic orbital electron populations 1.22162 0.96217 1.01402 1.02279 1.21886 0.92299 0.99630 0.84649 0.88379 1.21558 0.85348 0.97645 0.95171 1.43968 1.00031 1.20872 1.68240 1.21119 0.96365 0.89293 0.94992 1.18727 1.07030 1.10619 1.03565 0.90507 1.25476 0.97868 0.95897 0.97142 1.69896 1.46704 1.11199 1.25611 0.87000 0.80084 0.81402 0.81273 1.21167 1.22708 1.19413 1.45815 1.65732 1.13598 1.08957 1.16648 0.78081 0.86068 0.81821 1.90837 1.50913 1.14835 1.84931 1.26030 1.14863 0.98886 1.00235 1.22196 0.97127 0.92798 0.95230 1.66008 1.16205 1.34767 0.99473 1.27070 1.03887 0.94280 0.99712 1.21367 0.93902 0.88589 0.86813 0.88997 1.22999 0.93927 1.00165 1.01212 1.22927 0.97970 0.99148 0.98929 1.23470 0.88936 1.01656 0.89386 1.89288 1.55206 1.34653 1.47692 1.83960 1.55673 1.10600 0.99815 0.91581 0.92985 0.92518 0.93691 0.91118 0.97000 0.94180 0.95808 0.92612 0.77010 0.80195 0.89658 0.89636 0.90204 0.90165 0.88632 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.48 37.16 0.35 -2.19 16 2 C 0.12 2.29 2.88 -67.93 -0.20 2.10 16 3 H 0.10 2.25 7.58 -51.93 -0.39 1.86 16 4 C 0.13 2.63 4.14 -4.04 -0.02 2.61 16 5 N -0.61 -13.81 2.32 -181.12 -0.42 -14.23 16 6 C 0.13 2.38 10.23 59.85 0.61 2.99 16 7 C -0.27 -7.47 9.92 -15.06 -0.15 -7.62 16 8 H 0.08 2.33 8.06 -52.48 -0.42 1.90 16 9 C 0.04 1.06 5.27 -17.43 -0.09 0.97 16 10 N -0.89 -27.10 13.97 55.49 0.78 -26.32 16 11 Si 0.87 21.53 25.19 -169.99 -4.28 17.25 16 12 H -0.28 -6.69 6.64 56.52 0.38 -6.32 16 13 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 15 N -0.69 -11.48 4.51 -55.11 -0.25 -11.73 16 16 C 0.59 10.43 7.75 -12.85 -0.10 10.33 16 17 O -0.54 -11.36 16.63 5.20 0.09 -11.27 16 18 C -0.28 -4.06 6.48 -37.10 -0.24 -4.30 16 19 C 0.08 1.12 10.93 -18.85 -0.21 0.91 16 20 N -0.45 -6.11 10.47 -11.50 -0.12 -6.23 16 21 C 0.03 0.30 6.24 -13.29 -0.08 0.22 16 22 C 0.15 1.44 3.80 -27.11 -0.10 1.34 16 23 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 24 C -0.14 -1.09 6.62 -25.17 -0.17 -1.25 16 25 C -0.15 -0.90 7.09 -25.16 -0.18 -1.08 16 26 C 0.04 0.29 7.63 37.94 0.29 0.57 16 27 O -0.35 -3.77 11.30 -35.23 -0.40 -4.16 16 28 S 0.24 2.98 23.01 -107.50 -2.47 0.51 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.04 0.78 8.07 -51.93 -0.42 0.37 16 33 H 0.07 1.59 3.42 -51.93 -0.18 1.41 16 34 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.04 0.76 8.08 -51.93 -0.42 0.34 16 36 H 0.02 0.35 5.77 -51.93 -0.30 0.05 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.39 5.58 4.92 -40.82 -0.20 5.37 16 39 H 0.18 1.96 7.15 -52.48 -0.38 1.58 16 40 H 0.08 0.79 7.86 -51.93 -0.41 0.38 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -34.38 377.38 -8.18 -42.56 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.51 Total: 2.34 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -0.28 Total: 5.61 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.01 Total: -58.51 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.31 Total: -15.43 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.28 Total: 17.25 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -2.47 Total: 0.51 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.38 -8.18 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733056863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.546 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds