Wall clock time and date at job start Sat Apr 11 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47352 * 2 1 4 4 C 1.53005 * 109.47090 * 240.00065 * 2 1 3 5 5 N 1.46492 * 109.47012 * 184.99922 * 4 2 1 6 6 C 1.46504 * 120.00045 * 90.00508 * 5 4 2 7 7 C 1.36942 * 120.00400 * 269.99609 * 5 4 2 8 8 H 1.08003 * 120.00088 * 142.15298 * 7 5 4 9 9 C 1.38809 * 119.99879 * 322.16282 * 7 5 4 10 10 N 1.31612 * 120.00430 * 156.07414 * 9 7 5 11 11 Si 1.86812 * 119.99901 * 336.07333 * 9 7 5 12 12 H 1.48494 * 109.46823 * 95.16216 * 11 9 7 13 13 H 1.48501 * 109.47024 * 215.16186 * 11 9 7 14 14 H 1.48492 * 109.46730 * 335.16399 * 11 9 7 15 15 N 1.46500 * 109.47386 * 120.00157 * 2 1 3 16 16 C 1.34779 * 120.00006 * 275.00266 * 15 2 1 17 17 O 1.21688 * 119.99596 * 359.97438 * 16 15 2 18 18 C 1.46677 * 119.99973 * 179.72787 * 16 15 2 19 19 C 1.35659 * 126.13491 * 0.28786 * 18 16 15 20 20 N 1.30939 * 114.19814 * 180.02562 * 19 18 16 21 21 C 1.29434 * 117.35839 * 0.02562 * 20 19 18 22 22 C 1.50706 * 124.80124 * 180.02562 * 21 20 19 23 23 H 1.08996 * 110.32827 * 197.22650 * 22 21 20 24 24 C 1.54474 * 110.37430 * 74.97141 * 22 21 20 25 25 C 1.54506 * 104.06685 * 217.19056 * 24 22 21 26 26 C 1.54487 * 104.05987 * 359.97438 * 25 24 22 27 27 O 1.44423 * 110.37105 * 319.58970 * 22 21 20 28 28 S 1.70948 * 110.39072 * 359.72246 * 21 20 19 29 29 H 1.08999 * 109.47331 * 60.00209 * 1 2 3 30 30 H 1.08999 * 109.47352 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47115 * 299.99778 * 1 2 3 32 32 H 1.08998 * 109.46738 * 304.99950 * 4 2 1 33 33 H 1.08997 * 109.46906 * 64.99742 * 4 2 1 34 34 H 1.08995 * 109.47447 * 95.53890 * 6 5 4 35 35 H 1.09002 * 109.46699 * 215.54038 * 6 5 4 36 36 H 1.08999 * 109.47052 * 335.53269 * 6 5 4 37 37 H 0.97003 * 120.00428 * 180.02562 * 10 9 7 38 38 H 0.97000 * 119.99860 * 94.99414 * 15 2 1 39 39 H 1.08004 * 122.90102 * 0.04586 * 19 18 16 40 40 H 1.09002 * 110.51245 * 335.83436 * 24 22 21 41 41 H 1.09000 * 110.51064 * 98.40795 * 24 22 21 42 42 H 1.09000 * 110.51574 * 118.64112 * 25 24 22 43 43 H 1.08994 * 110.51000 * 241.22302 * 25 24 22 44 44 H 1.09001 * 110.36863 * 142.80853 * 26 25 24 45 45 H 1.08995 * 110.37389 * 265.03504 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1258 -1.9920 -0.5613 7 6 4.2799 0.1648 -1.7241 8 1 5.1938 0.4582 -1.2291 9 6 3.8956 0.7926 -2.9010 10 7 4.3315 2.0042 -3.1733 11 14 2.7597 -0.0824 -4.0985 12 1 1.3566 0.3300 -3.8410 13 1 3.1343 0.2782 -5.4895 14 1 2.8854 -1.5508 -3.9168 15 7 2.0184 -0.6906 1.1961 16 6 2.1471 -0.0183 2.3571 17 8 1.8580 1.1625 2.4116 18 6 2.6304 -0.7112 3.5562 19 6 2.9868 -2.0177 3.6361 20 7 3.3855 -2.3935 4.8254 21 6 3.3923 -1.4988 5.7607 22 6 3.8182 -1.7467 7.1849 23 1 3.4551 -0.9490 7.8330 24 6 5.3565 -1.8547 7.2751 25 6 5.5943 -2.9529 8.3356 26 6 4.1713 -3.3780 8.7612 27 8 3.3310 -3.0279 7.6397 28 16 2.8578 0.0056 5.1498 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7198 -1.2951 33 1 1.7516 -0.1583 -2.1370 34 1 4.3719 -2.7291 -1.3256 35 1 5.0363 -1.6827 -0.0482 36 1 3.4347 -2.4313 0.1581 37 1 4.0627 2.4430 -3.9956 38 1 2.2490 -1.6318 1.1525 39 1 2.9456 -2.6898 2.7916 40 1 5.7754 -2.1545 6.3145 41 1 5.7875 -0.9077 7.5998 42 1 6.1306 -3.7956 7.8993 43 1 6.1446 -2.5501 9.1858 44 1 4.1344 -4.4524 8.9417 45 1 3.8635 -2.8333 9.6536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733056863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:21 Heat of formation + Delta-G solvation = -28.277173 kcal Electronic energy + Delta-G solvation = -27269.600752 eV Core-core repulsion = 23414.217647 eV Total energy + Delta-G solvation = -3855.383105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46811 -40.72841 -39.75826 -38.31188 -35.76607 -33.71301 -33.41230 -32.96670 -31.81075 -29.73210 -28.30053 -27.54216 -26.67258 -24.32766 -23.65271 -22.94438 -22.32672 -21.97249 -20.75078 -19.59035 -18.87734 -18.44264 -17.35644 -17.23299 -16.96414 -16.66710 -16.31759 -16.23634 -15.94240 -15.59760 -15.21222 -15.04316 -14.84762 -14.67607 -14.66640 -14.46048 -14.10972 -13.66221 -13.56321 -13.20613 -12.86335 -12.76462 -12.70802 -12.69054 -12.64888 -12.28743 -12.24412 -12.07046 -11.88500 -11.69281 -11.61733 -11.43988 -10.90465 -10.72010 -10.64735 -10.61860 -10.20708 -9.97936 -8.77721 -8.21637 -5.60232 -0.93189 -0.05058 0.50715 1.30290 1.30709 1.42554 1.53918 2.06459 2.19441 2.41031 2.74293 2.99379 3.04231 3.40606 3.58096 3.68328 3.69476 3.91762 3.98024 4.07277 4.13738 4.22661 4.24666 4.35451 4.38919 4.57463 4.62425 4.67961 4.74272 4.79862 4.83149 4.89318 4.96975 5.01487 5.05095 5.09501 5.10812 5.15857 5.28197 5.48465 5.76642 5.91636 6.14593 6.41854 6.49620 6.95860 7.11236 7.59869 7.99692 8.98631 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020952 B = 0.002655 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.095795 B =10543.062594 C =10916.576680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.129 3.871 3 H 0.044 0.956 4 C 0.126 3.874 5 N -0.619 5.619 6 C 0.124 3.876 7 C -0.263 4.263 8 H 0.029 0.971 9 C -0.023 4.023 10 N -0.949 5.949 11 Si 0.945 3.055 12 H -0.265 1.265 13 H -0.310 1.310 14 H -0.251 1.251 15 N -0.681 5.681 16 C 0.590 3.410 17 O -0.583 6.583 18 C -0.313 4.313 19 C 0.104 3.896 20 N -0.475 5.475 21 C 0.041 3.959 22 C 0.147 3.853 23 H 0.118 0.882 24 C -0.144 4.144 25 C -0.146 4.146 26 C 0.037 3.963 27 O -0.381 6.381 28 S 0.255 5.745 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.021 0.979 35 H 0.028 0.972 36 H 0.068 0.932 37 H 0.263 0.737 38 H 0.408 0.592 39 H 0.203 0.797 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.583 -12.874 24.443 27.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.022 3.978 3 H 0.062 0.938 4 C 0.000 4.000 5 N -0.343 5.343 6 C -0.020 4.020 7 C -0.393 4.393 8 H 0.047 0.953 9 C -0.220 4.220 10 N -0.592 5.592 11 Si 0.773 3.227 12 H -0.192 1.192 13 H -0.239 1.239 14 H -0.175 1.175 15 N -0.333 5.333 16 C 0.376 3.624 17 O -0.465 6.465 18 C -0.438 4.438 19 C -0.056 4.056 20 N -0.189 5.189 21 C -0.234 4.234 22 C 0.085 3.915 23 H 0.136 0.864 24 C -0.183 4.183 25 C -0.184 4.184 26 C -0.039 4.039 27 O -0.300 6.300 28 S 0.514 5.486 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.246 0.754 39 H 0.220 0.780 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.093 0.907 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.904 -11.597 24.888 27.734 hybrid contribution 0.153 -0.513 -1.893 1.967 sum -3.751 -12.111 22.995 26.259 Atomic orbital electron populations 1.22072 0.93420 1.03467 1.02128 1.21569 0.94393 0.96758 0.85082 0.93775 1.21670 0.83804 0.99750 0.94751 1.44063 1.00941 1.21074 1.68233 1.21247 0.96921 0.87996 0.95825 1.18556 1.06045 1.11418 1.03266 0.95305 1.26166 1.00613 0.96205 0.98983 1.70048 1.49815 1.13108 1.26261 0.85829 0.78728 0.80684 0.77504 1.19179 1.23854 1.17509 1.45639 1.65468 1.14061 1.08139 1.16974 0.77198 0.85579 0.82663 1.90808 1.53066 1.16860 1.85736 1.25744 1.18021 0.99784 1.00232 1.22532 0.94934 0.92309 0.95792 1.66124 1.17609 1.35340 0.99858 1.27698 1.01283 0.93669 1.00702 1.21721 0.95070 0.89196 0.85473 0.86428 1.23034 0.92528 1.01881 1.00861 1.22930 0.97809 0.98471 0.99182 1.23711 0.88762 1.02525 0.88949 1.89247 1.56445 1.35161 1.49181 1.83880 1.55366 1.10683 0.98643 0.91248 0.89688 0.93252 0.89244 0.93159 0.96040 0.95346 0.91403 0.92795 0.75355 0.78046 0.91767 0.87496 0.90665 0.87680 0.87961 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 9.48 71.98 0.68 -3.82 16 2 C 0.13 4.79 2.88 44.99 0.13 4.92 16 3 H 0.04 2.12 7.58 -2.39 -0.02 2.10 16 4 C 0.13 4.84 4.14 86.38 0.36 5.19 16 5 N -0.62 -27.59 2.32 -726.94 -1.69 -29.28 16 6 C 0.12 4.36 10.23 127.77 1.31 5.67 16 7 C -0.26 -14.93 9.92 84.03 0.83 -14.10 16 8 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 9 C -0.02 -1.35 5.27 84.86 0.45 -0.90 16 10 N -0.95 -60.10 13.97 21.65 0.30 -59.80 16 11 Si 0.95 44.66 25.19 68.60 1.73 46.39 16 12 H -0.27 -11.63 6.64 99.48 0.66 -10.97 16 13 H -0.31 -15.07 7.11 99.48 0.71 -14.36 16 14 H -0.25 -11.05 7.11 99.48 0.71 -10.34 16 15 N -0.68 -21.91 4.51 -446.50 -2.01 -23.92 16 16 C 0.59 20.97 7.75 86.45 0.67 21.64 16 17 O -0.58 -25.59 16.63 -4.31 -0.07 -25.66 16 18 C -0.31 -9.05 6.48 23.88 0.15 -8.90 16 19 C 0.10 2.57 10.93 84.23 0.92 3.49 16 20 N -0.47 -12.17 10.47 -190.30 -1.99 -14.16 16 21 C 0.04 0.92 6.24 88.46 0.55 1.47 16 22 C 0.15 2.43 3.80 30.35 0.12 2.54 16 23 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 24 C -0.14 -1.86 6.62 31.61 0.21 -1.65 16 25 C -0.15 -1.35 7.09 31.61 0.22 -1.12 16 26 C 0.04 0.40 7.63 72.49 0.55 0.95 16 27 O -0.38 -7.45 11.30 -148.98 -1.68 -9.14 16 28 S 0.26 6.14 23.01 -56.49 -1.30 4.84 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.09 2.68 8.07 -2.39 -0.02 2.66 16 33 H 0.05 2.16 3.42 -2.39 -0.01 2.15 16 34 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.03 1.05 8.08 -2.39 -0.02 1.03 16 36 H 0.07 1.74 5.77 -2.39 -0.01 1.73 16 37 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 38 H 0.41 10.41 4.92 -92.71 -0.46 9.96 16 39 H 0.20 3.81 7.15 -2.91 -0.02 3.78 16 40 H 0.06 1.11 7.86 -2.39 -0.02 1.09 16 41 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -79.67 377.38 0.95 -78.71 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.51 Total: 16.64 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 7.16 Total: 15.38 kcal Atomic # 7 Polarization: -121.78 SS G_CDS: -5.39 Total: -127.17 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.76 Total: -34.80 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.73 Total: 46.39 kcal Atomic # 16 Polarization: 6.14 SS G_CDS: -1.30 Total: 4.84 kcal Total: -79.67 0.95 -78.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733056863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.435 kcal (2) G-P(sol) polarization free energy of solvation -79.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds