Wall clock time and date at job start Sat Apr 11 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47194 * 2 1 4 4 C 1.53000 * 109.47308 * 120.00037 * 2 1 3 5 5 N 1.46498 * 109.47351 * 174.99732 * 4 2 1 6 6 C 1.46498 * 119.99608 * 89.99947 * 5 4 2 7 7 C 1.36935 * 120.00099 * 270.00455 * 5 4 2 8 8 H 1.07999 * 119.99718 * 334.62202 * 7 5 4 9 9 C 1.38818 * 119.99876 * 154.62434 * 7 5 4 10 10 N 1.31618 * 119.99903 * 3.81646 * 9 7 5 11 11 Si 1.86800 * 119.99547 * 183.81380 * 9 7 5 12 12 H 1.48493 * 109.47192 * 60.00281 * 11 9 7 13 13 H 1.48503 * 109.46739 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47316 * 299.99485 * 11 9 7 15 15 N 1.46505 * 109.47054 * 240.00272 * 2 1 3 16 16 C 1.34775 * 119.99820 * 85.00027 * 15 2 1 17 17 O 1.21685 * 120.00034 * 359.97438 * 16 15 2 18 18 C 1.46683 * 119.99494 * 180.02562 * 16 15 2 19 19 C 1.35657 * 126.13530 * 0.02562 * 18 16 15 20 20 N 1.30937 * 114.19606 * 179.97438 * 19 18 16 21 21 C 1.29435 * 117.36542 * 0.02562 * 20 19 18 22 22 C 1.50696 * 124.80702 * 180.02562 * 21 20 19 23 23 H 1.09003 * 110.32863 * 197.22557 * 22 21 20 24 24 C 1.54477 * 110.37149 * 74.97372 * 22 21 20 25 25 C 1.54511 * 104.05926 * 217.18856 * 24 22 21 26 26 C 1.54478 * 104.06585 * 0.02562 * 25 24 22 27 27 O 1.44422 * 110.37265 * 319.59006 * 22 21 20 28 28 S 1.70955 * 110.38389 * 359.71920 * 21 20 19 29 29 H 1.09002 * 109.47177 * 59.99670 * 1 2 3 30 30 H 1.08996 * 109.47189 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46905 * 300.00040 * 1 2 3 32 32 H 1.09001 * 109.46854 * 54.99772 * 4 2 1 33 33 H 1.08996 * 109.46899 * 295.00603 * 4 2 1 34 34 H 1.08995 * 109.47573 * 264.44937 * 6 5 4 35 35 H 1.09001 * 109.47030 * 144.44884 * 6 5 4 36 36 H 1.09005 * 109.47103 * 24.45119 * 6 5 4 37 37 H 0.96996 * 119.99876 * 180.02562 * 10 9 7 38 38 H 0.96998 * 119.99636 * 264.99811 * 15 2 1 39 39 H 1.08000 * 122.90381 * 0.02562 * 19 18 16 40 40 H 1.08994 * 110.51554 * 335.82975 * 24 22 21 41 41 H 1.08995 * 110.51436 * 98.40946 * 24 22 21 42 42 H 1.09003 * 110.51158 * 118.64520 * 25 24 22 43 43 H 1.09003 * 110.51576 * 241.21816 * 25 24 22 44 44 H 1.09003 * 110.37697 * 142.80753 * 26 25 24 45 45 H 1.09004 * 110.37146 * 265.03919 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.3343 0.2340 1.7612 7 6 4.0850 -1.9159 0.6022 8 1 3.5520 -2.8539 0.5525 9 6 5.3630 -1.8146 0.0697 10 7 6.0418 -0.6942 0.1966 11 14 6.1191 -3.2686 -0.8267 12 1 5.2719 -3.6261 -1.9927 13 1 7.4808 -2.9070 -1.2960 14 1 6.2060 -4.4286 0.0964 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0181 -2.3572 17 8 1.8572 1.1624 -2.4118 18 6 2.6354 -0.7098 -3.5550 19 6 2.9911 -2.0164 -3.6351 20 7 3.3951 -2.3908 -4.8230 21 6 3.4080 -1.4946 -5.7568 22 6 3.8396 -1.7409 -7.1795 23 1 4.0500 -0.7959 -7.6804 24 6 2.7494 -2.5238 -7.9442 25 6 3.5463 -3.4784 -8.8613 26 6 5.0237 -3.1597 -8.5417 27 8 5.0009 -2.5988 -7.2113 28 16 2.8583 0.0060 -5.1497 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -1.7198 1.2951 33 1 1.7516 -0.1584 2.1369 34 1 4.6217 0.9327 0.9756 35 1 5.2292 -0.2053 2.2020 36 1 3.7727 0.7636 2.5308 37 1 6.9347 -0.6233 -0.1758 38 1 2.2490 -1.6317 -1.1527 39 1 2.9443 -2.6900 -2.7921 40 1 2.1285 -3.0906 -7.2505 41 1 2.1362 -1.8449 -8.5368 42 1 3.3194 -4.5171 -8.6208 43 1 3.3269 -3.2733 -9.9091 44 1 5.6210 -4.0713 -8.5594 45 1 5.4181 -2.4345 -9.2536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733056864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:24 Heat of formation + Delta-G solvation = -8.593991 kcal Electronic energy + Delta-G solvation = -27865.064493 eV Core-core repulsion = 24010.534915 eV Total energy + Delta-G solvation = -3854.529578 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.19422 -39.39165 -38.51124 -36.29750 -34.01044 -32.47731 -32.00518 -31.11505 -30.15423 -28.45810 -26.16128 -25.62592 -25.56415 -23.19754 -22.26816 -21.60494 -21.22437 -20.05759 -19.25120 -18.24798 -17.18140 -16.63428 -16.46992 -15.89634 -15.35681 -15.29936 -14.97160 -14.78719 -14.11236 -14.08585 -13.88098 -13.61271 -13.51546 -13.24225 -12.95551 -12.87092 -12.25112 -12.07240 -11.97651 -11.80011 -11.58857 -11.45633 -11.44832 -11.15049 -10.98451 -10.89342 -10.67549 -10.40591 -10.22656 -10.12105 -10.08988 -9.92520 -9.85434 -9.31206 -9.24454 -8.81566 -8.54190 -8.35033 -6.77380 -5.77166 -3.24371 0.39263 1.22535 1.76920 2.67683 3.36957 3.42649 3.47377 3.58877 3.74765 3.88439 3.96576 4.38857 4.45269 4.54537 4.63088 4.79417 4.97301 5.17529 5.20719 5.30373 5.34909 5.43654 5.47573 5.52587 5.54342 5.63879 5.69086 5.78471 5.85398 5.96484 6.14268 6.17687 6.22779 6.42761 6.48356 6.53976 6.76913 6.86802 7.15524 7.47510 7.70936 7.78393 7.85524 8.12713 8.37440 8.75002 9.20921 9.82834 10.33845 11.26693 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012502 B = 0.004030 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.177976 B = 6946.541258 C = 8444.751368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.119 3.881 3 H 0.079 0.921 4 C 0.143 3.857 5 N -0.601 5.601 6 C 0.166 3.834 7 C -0.265 4.265 8 H 0.066 0.934 9 C 0.017 3.983 10 N -0.898 5.898 11 Si 0.887 3.113 12 H -0.274 1.274 13 H -0.290 1.290 14 H -0.284 1.284 15 N -0.671 5.671 16 C 0.593 3.407 17 O -0.555 6.555 18 C -0.266 4.266 19 C 0.091 3.909 20 N -0.448 5.448 21 C 0.023 3.977 22 C 0.156 3.844 23 H 0.091 0.909 24 C -0.142 4.142 25 C -0.151 4.151 26 C 0.042 3.958 27 O -0.348 6.348 28 S 0.223 5.777 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.024 0.976 35 H 0.052 0.948 36 H -0.009 1.009 37 H 0.253 0.747 38 H 0.405 0.595 39 H 0.184 0.816 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.723 -2.393 -15.122 17.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.011 3.989 3 H 0.097 0.903 4 C 0.014 3.986 5 N -0.323 5.323 6 C 0.022 3.978 7 C -0.394 4.394 8 H 0.084 0.916 9 C -0.183 4.183 10 N -0.542 5.542 11 Si 0.716 3.284 12 H -0.200 1.200 13 H -0.216 1.216 14 H -0.210 1.210 15 N -0.320 5.320 16 C 0.377 3.623 17 O -0.436 6.436 18 C -0.391 4.391 19 C -0.066 4.066 20 N -0.163 5.163 21 C -0.252 4.252 22 C 0.094 3.906 23 H 0.109 0.891 24 C -0.181 4.181 25 C -0.189 4.189 26 C -0.035 4.035 27 O -0.266 6.266 28 S 0.480 5.520 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.009 0.991 37 H 0.064 0.936 38 H 0.241 0.759 39 H 0.201 0.799 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.113 0.887 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.522 -1.070 -15.576 17.787 hybrid contribution 0.738 -1.805 0.113 1.953 sum -7.784 -2.874 -15.463 17.548 Atomic orbital electron populations 1.22159 0.96615 1.01410 1.01700 1.21948 0.91948 0.98499 0.86479 0.90269 1.21198 0.86078 0.97906 0.93430 1.43848 0.98804 1.22471 1.67223 1.20876 0.92998 0.90144 0.93790 1.19020 0.99442 0.89128 1.31835 0.91583 1.25102 0.98080 0.96365 0.98712 1.70058 1.11823 1.24958 1.47350 0.86624 0.79121 0.82207 0.80431 1.19985 1.21621 1.20996 1.45530 1.64139 1.14354 1.07995 1.16593 0.77770 0.85867 0.82026 1.90769 1.52437 1.15029 1.85364 1.25967 1.14760 0.98785 0.99585 1.22280 0.96071 0.93225 0.95053 1.65992 1.15365 1.35072 0.99831 1.27014 1.04638 0.93807 0.99756 1.21345 0.86707 0.95164 0.87359 0.89103 1.22984 0.97994 0.98600 0.98562 1.22925 0.95210 1.00818 0.99981 1.23455 0.96630 0.98891 0.84557 1.89327 1.44208 1.62202 1.30871 1.83738 1.56770 1.11142 1.00320 0.92902 0.92885 0.92022 0.93282 0.92782 0.95743 0.92942 0.99061 0.93597 0.75856 0.79938 0.89758 0.89796 0.90296 0.90270 0.88685 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.48 37.16 0.35 -2.01 16 2 C 0.12 2.20 2.88 -67.93 -0.20 2.00 16 3 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16 4 C 0.14 2.70 5.36 -4.04 -0.02 2.68 16 5 N -0.60 -14.27 2.82 -181.12 -0.51 -14.78 16 6 C 0.17 4.09 8.99 59.85 0.54 4.63 16 7 C -0.26 -6.72 8.01 -15.06 -0.12 -6.84 16 8 H 0.07 1.60 7.83 -52.49 -0.41 1.19 16 9 C 0.02 0.46 5.38 -17.43 -0.09 0.37 16 10 N -0.90 -25.78 10.13 55.49 0.56 -25.22 16 11 Si 0.89 21.53 29.56 -169.99 -5.02 16.51 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 N -0.67 -13.00 4.47 -55.11 -0.25 -13.24 16 16 C 0.59 12.15 7.75 -12.85 -0.10 12.05 16 17 O -0.56 -12.62 16.63 5.20 0.09 -12.53 16 18 C -0.27 -4.94 6.48 -37.10 -0.24 -5.18 16 19 C 0.09 1.66 10.93 -18.86 -0.21 1.45 16 20 N -0.45 -8.04 10.47 -11.50 -0.12 -8.16 16 21 C 0.02 0.35 6.24 -13.29 -0.08 0.27 16 22 C 0.16 1.89 3.80 -27.11 -0.10 1.78 16 23 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 24 C -0.14 -1.31 6.62 -25.16 -0.17 -1.48 16 25 C -0.15 -1.17 7.09 -25.16 -0.18 -1.34 16 26 C 0.04 0.38 7.63 37.93 0.29 0.67 16 27 O -0.35 -4.93 11.30 -35.23 -0.40 -5.32 16 28 S 0.22 3.42 23.01 -107.50 -2.47 0.94 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.87 8.04 -51.93 -0.42 0.45 16 33 H 0.05 0.94 7.86 -51.93 -0.41 0.53 16 34 H 0.02 0.66 7.43 -51.93 -0.39 0.28 16 35 H 0.05 1.40 7.04 -51.93 -0.37 1.03 16 36 H -0.01 -0.20 7.83 -51.93 -0.41 -0.60 16 37 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.40 7.66 6.11 -40.82 -0.25 7.41 16 39 H 0.18 3.19 7.15 -52.49 -0.38 2.82 16 40 H 0.08 0.90 7.86 -51.93 -0.41 0.49 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 382.68 15.07 5.77 5.77 Total: -1.00 -32.97 382.68 -9.45 -42.42 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.76 Total: 4.56 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -0.33 Total: 9.06 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: -0.32 Total: -61.40 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.31 Total: -17.86 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -2.47 Total: 0.94 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.97 -9.45 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733056864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.826 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds