Wall clock time and date at job start Sat Apr 11 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47194 * 2 1 4 4 C 1.53000 * 109.47308 * 120.00037 * 2 1 3 5 5 N 1.46498 * 109.47351 * 174.99732 * 4 2 1 6 6 C 1.46498 * 119.99608 * 89.99947 * 5 4 2 7 7 C 1.36935 * 120.00099 * 270.00455 * 5 4 2 8 8 H 1.07999 * 119.99718 * 334.62202 * 7 5 4 9 9 C 1.38818 * 119.99876 * 154.62434 * 7 5 4 10 10 N 1.31618 * 119.99903 * 3.81646 * 9 7 5 11 11 Si 1.86800 * 119.99547 * 183.81380 * 9 7 5 12 12 H 1.48493 * 109.47192 * 60.00281 * 11 9 7 13 13 H 1.48503 * 109.46739 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47316 * 299.99485 * 11 9 7 15 15 N 1.46505 * 109.47054 * 240.00272 * 2 1 3 16 16 C 1.34775 * 119.99820 * 85.00027 * 15 2 1 17 17 O 1.21685 * 120.00034 * 359.97438 * 16 15 2 18 18 C 1.46683 * 119.99494 * 180.02562 * 16 15 2 19 19 C 1.35657 * 126.13530 * 0.02562 * 18 16 15 20 20 N 1.30937 * 114.19606 * 179.97438 * 19 18 16 21 21 C 1.29435 * 117.36542 * 0.02562 * 20 19 18 22 22 C 1.50696 * 124.80702 * 180.02562 * 21 20 19 23 23 H 1.09003 * 110.32863 * 197.22557 * 22 21 20 24 24 C 1.54477 * 110.37149 * 74.97372 * 22 21 20 25 25 C 1.54511 * 104.05926 * 217.18856 * 24 22 21 26 26 C 1.54478 * 104.06585 * 0.02562 * 25 24 22 27 27 O 1.44422 * 110.37265 * 319.59006 * 22 21 20 28 28 S 1.70955 * 110.38389 * 359.71920 * 21 20 19 29 29 H 1.09002 * 109.47177 * 59.99670 * 1 2 3 30 30 H 1.08996 * 109.47189 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46905 * 300.00040 * 1 2 3 32 32 H 1.09001 * 109.46854 * 54.99772 * 4 2 1 33 33 H 1.08996 * 109.46899 * 295.00603 * 4 2 1 34 34 H 1.08995 * 109.47573 * 264.44937 * 6 5 4 35 35 H 1.09001 * 109.47030 * 144.44884 * 6 5 4 36 36 H 1.09005 * 109.47103 * 24.45119 * 6 5 4 37 37 H 0.96996 * 119.99876 * 180.02562 * 10 9 7 38 38 H 0.96998 * 119.99636 * 264.99811 * 15 2 1 39 39 H 1.08000 * 122.90381 * 0.02562 * 19 18 16 40 40 H 1.08994 * 110.51554 * 335.82975 * 24 22 21 41 41 H 1.08995 * 110.51436 * 98.40946 * 24 22 21 42 42 H 1.09003 * 110.51158 * 118.64520 * 25 24 22 43 43 H 1.09003 * 110.51576 * 241.21816 * 25 24 22 44 44 H 1.09003 * 110.37697 * 142.80753 * 26 25 24 45 45 H 1.09004 * 110.37146 * 265.03919 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.3343 0.2340 1.7612 7 6 4.0850 -1.9159 0.6022 8 1 3.5520 -2.8539 0.5525 9 6 5.3630 -1.8146 0.0697 10 7 6.0418 -0.6942 0.1966 11 14 6.1191 -3.2686 -0.8267 12 1 5.2719 -3.6261 -1.9927 13 1 7.4808 -2.9070 -1.2960 14 1 6.2060 -4.4286 0.0964 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0181 -2.3572 17 8 1.8572 1.1624 -2.4118 18 6 2.6354 -0.7098 -3.5550 19 6 2.9911 -2.0164 -3.6351 20 7 3.3951 -2.3908 -4.8230 21 6 3.4080 -1.4946 -5.7568 22 6 3.8396 -1.7409 -7.1795 23 1 4.0500 -0.7959 -7.6804 24 6 2.7494 -2.5238 -7.9442 25 6 3.5463 -3.4784 -8.8613 26 6 5.0237 -3.1597 -8.5417 27 8 5.0009 -2.5988 -7.2113 28 16 2.8583 0.0060 -5.1497 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -1.7198 1.2951 33 1 1.7516 -0.1584 2.1369 34 1 4.6217 0.9327 0.9756 35 1 5.2292 -0.2053 2.2020 36 1 3.7727 0.7636 2.5308 37 1 6.9347 -0.6233 -0.1758 38 1 2.2490 -1.6317 -1.1527 39 1 2.9443 -2.6900 -2.7921 40 1 2.1285 -3.0906 -7.2505 41 1 2.1362 -1.8449 -8.5368 42 1 3.3194 -4.5171 -8.6208 43 1 3.3269 -3.2733 -9.9091 44 1 5.6210 -4.0713 -8.5594 45 1 5.4181 -2.4345 -9.2536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733056864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:24 Heat of formation + Delta-G solvation = -31.176241 kcal Electronic energy + Delta-G solvation = -27866.043733 eV Core-core repulsion = 24010.534915 eV Total energy + Delta-G solvation = -3855.508818 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.42504 -40.64804 -39.75161 -38.02741 -35.76613 -33.65407 -33.16554 -32.64325 -31.53675 -29.66250 -28.04440 -27.36541 -26.67172 -24.32880 -23.73878 -22.88697 -22.30305 -21.55664 -20.67671 -19.46570 -18.81251 -18.32157 -17.39312 -17.02780 -16.82659 -16.68560 -16.36148 -16.15076 -15.61312 -15.47714 -15.26123 -15.03560 -14.75458 -14.66359 -14.51559 -14.13730 -13.87531 -13.38215 -13.04202 -12.92373 -12.77730 -12.73445 -12.71618 -12.70435 -12.58943 -12.27380 -12.11450 -12.04773 -12.00656 -11.70409 -11.62473 -11.40380 -10.93456 -10.70078 -10.59791 -10.58334 -10.13151 -9.85928 -8.74991 -7.83306 -5.29232 -0.92329 -0.03199 0.47740 1.31611 1.41888 1.46843 1.49206 2.09488 2.40004 2.47483 2.75960 3.01808 3.34355 3.58981 3.66933 3.70060 3.81063 3.90814 4.05620 4.13325 4.17584 4.22090 4.34767 4.43649 4.53512 4.65809 4.77697 4.80564 4.85510 4.86393 4.92105 4.93573 5.01673 5.04134 5.14523 5.17917 5.39807 5.42291 5.64169 5.65830 5.76618 5.80432 6.34159 6.48538 6.57558 7.16722 7.20171 7.88771 8.35111 9.20397 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012502 B = 0.004030 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.177976 B = 6946.541258 C = 8444.751368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.121 3.879 3 H 0.046 0.954 4 C 0.142 3.858 5 N -0.615 5.615 6 C 0.181 3.819 7 C -0.248 4.248 8 H 0.083 0.917 9 C -0.033 4.033 10 N -0.933 5.933 11 Si 0.936 3.064 12 H -0.267 1.267 13 H -0.312 1.312 14 H -0.274 1.274 15 N -0.671 5.671 16 C 0.589 3.411 17 O -0.587 6.587 18 C -0.305 4.305 19 C 0.095 3.905 20 N -0.480 5.480 21 C 0.035 3.965 22 C 0.145 3.855 23 H 0.119 0.881 24 C -0.138 4.138 25 C -0.144 4.144 26 C 0.034 3.966 27 O -0.390 6.390 28 S 0.262 5.738 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.078 0.922 34 H -0.012 1.012 35 H 0.025 0.975 36 H 0.024 0.976 37 H 0.241 0.759 38 H 0.407 0.593 39 H 0.183 0.817 40 H 0.065 0.935 41 H 0.114 0.886 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.556 -3.383 -16.614 19.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 H 0.064 0.936 4 C 0.015 3.985 5 N -0.338 5.338 6 C 0.036 3.964 7 C -0.378 4.378 8 H 0.100 0.900 9 C -0.229 4.229 10 N -0.580 5.580 11 Si 0.765 3.235 12 H -0.193 1.193 13 H -0.239 1.239 14 H -0.200 1.200 15 N -0.319 5.319 16 C 0.375 3.625 17 O -0.471 6.471 18 C -0.430 4.430 19 C -0.064 4.064 20 N -0.195 5.195 21 C -0.240 4.240 22 C 0.084 3.916 23 H 0.137 0.863 24 C -0.178 4.178 25 C -0.181 4.181 26 C -0.043 4.043 27 O -0.309 6.309 28 S 0.521 5.479 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.007 0.993 35 H 0.044 0.956 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.243 0.757 39 H 0.200 0.800 40 H 0.084 0.916 41 H 0.132 0.868 42 H 0.093 0.907 43 H 0.129 0.871 44 H 0.116 0.884 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.409 -2.091 -17.060 20.094 hybrid contribution 1.272 -1.506 0.543 2.045 sum -9.137 -3.597 -16.517 19.216 Atomic orbital electron populations 1.22035 0.93261 1.02896 1.02339 1.21873 0.94450 0.96381 0.85894 0.93585 1.21414 0.83075 0.99587 0.94420 1.44077 1.00906 1.21722 1.67049 1.20551 0.92827 0.89753 0.93266 1.19392 0.98911 0.90137 1.29339 0.89970 1.25631 0.99134 0.97858 1.00285 1.70246 1.11600 1.26784 1.49387 0.85831 0.77341 0.80447 0.79877 1.19290 1.23944 1.20013 1.45598 1.63830 1.14368 1.08134 1.16848 0.77308 0.85584 0.82778 1.90734 1.54088 1.16260 1.85979 1.25896 1.16994 0.99465 1.00632 1.22321 0.95492 0.93099 0.95455 1.66060 1.17080 1.36151 1.00175 1.27782 1.02104 0.93328 1.00797 1.21795 0.87456 0.96809 0.85538 0.86317 1.23019 0.97333 0.98982 0.98421 1.22927 0.93678 1.00177 1.01352 1.23732 0.97958 0.99551 0.83018 1.89277 1.44967 1.62963 1.33722 1.83497 1.55956 1.10398 0.98072 0.94054 0.90912 0.89607 0.91134 0.90415 0.99345 0.95648 0.95807 0.94949 0.75667 0.80026 0.91612 0.86755 0.90702 0.87150 0.88375 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.48 71.98 0.68 -3.31 16 2 C 0.12 4.35 2.88 44.99 0.13 4.48 16 3 H 0.05 1.97 7.58 -2.39 -0.02 1.95 16 4 C 0.14 5.05 5.36 86.38 0.46 5.52 16 5 N -0.61 -28.71 2.82 -726.94 -2.05 -30.76 16 6 C 0.18 9.00 8.99 127.77 1.15 10.15 16 7 C -0.25 -12.40 8.01 84.04 0.67 -11.73 16 8 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 9 C -0.03 -1.82 5.38 84.86 0.46 -1.36 16 10 N -0.93 -55.42 10.13 21.65 0.22 -55.20 16 11 Si 0.94 44.96 29.56 68.60 2.03 46.99 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 13 H -0.31 -16.03 7.11 99.48 0.71 -15.33 16 14 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 15 N -0.67 -25.89 4.47 -446.49 -2.00 -27.88 16 16 C 0.59 24.53 7.75 86.45 0.67 25.20 16 17 O -0.59 -27.29 16.63 -4.30 -0.07 -27.36 16 18 C -0.31 -11.45 6.48 23.88 0.15 -11.29 16 19 C 0.09 3.48 10.93 84.23 0.92 4.40 16 20 N -0.48 -17.14 10.47 -190.31 -1.99 -19.13 16 21 C 0.03 1.03 6.24 88.46 0.55 1.58 16 22 C 0.15 3.23 3.80 30.35 0.12 3.35 16 23 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 24 C -0.14 -2.19 6.62 31.61 0.21 -1.98 16 25 C -0.14 -1.78 7.09 31.61 0.22 -1.56 16 26 C 0.03 0.54 7.63 72.48 0.55 1.10 16 27 O -0.39 -10.55 11.30 -148.98 -1.68 -12.23 16 28 S 0.26 7.88 23.01 -56.49 -1.30 6.58 16 29 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 2.26 8.04 -2.39 -0.02 2.24 16 33 H 0.08 2.43 7.86 -2.39 -0.02 2.41 16 34 H -0.01 -0.67 7.43 -2.39 -0.02 -0.69 16 35 H 0.02 1.36 7.04 -2.39 -0.02 1.35 16 36 H 0.02 1.00 7.83 -2.38 -0.02 0.98 16 37 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 38 H 0.41 15.19 6.11 -92.71 -0.57 14.63 16 39 H 0.18 6.42 7.15 -2.91 -0.02 6.40 16 40 H 0.07 1.30 7.86 -2.39 -0.02 1.28 16 41 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -74.09 382.68 0.54 -73.55 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.44 Total: 20.92 kcal Atomic # 6 Polarization: 17.58 SS G_CDS: 6.95 Total: 24.54 kcal Atomic # 7 Polarization: -127.16 SS G_CDS: -5.82 Total: -132.98 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -1.75 Total: -39.60 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 7.88 SS G_CDS: -1.30 Total: 6.58 kcal Total: -74.09 0.54 -73.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733056864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.372 kcal (2) G-P(sol) polarization free energy of solvation -74.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds