Wall clock time and date at job start Sat Apr 11 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47653 * 2 1 4 4 C 1.53004 * 109.47143 * 120.00082 * 2 1 3 5 5 N 1.46499 * 109.47402 * 174.99690 * 4 2 1 6 6 C 1.46505 * 119.99860 * 89.99711 * 5 4 2 7 7 C 1.36932 * 120.00119 * 270.00096 * 5 4 2 8 8 H 1.07996 * 119.99787 * 334.61658 * 7 5 4 9 9 C 1.38818 * 120.00015 * 154.61908 * 7 5 4 10 10 N 1.31618 * 119.99903 * 3.91074 * 9 7 5 11 11 Si 1.86800 * 119.99547 * 183.90808 * 9 7 5 12 12 H 1.48491 * 109.47600 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.46884 * 120.00248 * 11 9 7 14 14 H 1.48507 * 109.46690 * 239.99647 * 11 9 7 15 15 N 1.46498 * 109.47220 * 239.99475 * 2 1 3 16 16 C 1.34784 * 119.99804 * 84.99760 * 15 2 1 17 17 O 1.21680 * 119.99742 * 0.02562 * 16 15 2 18 18 C 1.46680 * 119.99840 * 180.02562 * 16 15 2 19 19 C 1.35660 * 126.13568 * 359.69475 * 18 16 15 20 20 N 1.30940 * 114.19547 * 179.82263 * 19 18 16 21 21 C 1.29428 * 117.36045 * 0.48542 * 20 19 18 22 22 C 1.50698 * 124.80505 * 179.76535 * 21 20 19 23 23 H 1.08999 * 109.86971 * 164.25433 * 22 21 20 24 24 C 1.54098 * 109.87980 * 285.26432 * 22 21 20 25 25 C 1.54818 * 104.18820 * 121.45115 * 24 22 21 26 26 C 1.54998 * 102.09186 * 20.88317 * 25 24 22 27 27 O 1.43745 * 109.87811 * 43.24857 * 22 21 20 28 28 S 1.70955 * 110.39188 * 359.73137 * 21 20 19 29 29 H 1.08993 * 109.47765 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46936 * 300.00109 * 1 2 3 31 31 H 1.09002 * 109.47128 * 60.00004 * 1 2 3 32 32 H 1.09000 * 109.47067 * 54.99368 * 4 2 1 33 33 H 1.09008 * 109.47142 * 294.99617 * 4 2 1 34 34 H 1.09001 * 109.46885 * 264.46991 * 6 5 4 35 35 H 1.08992 * 109.46925 * 144.46915 * 6 5 4 36 36 H 1.09002 * 109.47244 * 24.46845 * 6 5 4 37 37 H 0.96996 * 119.99876 * 180.02562 * 10 9 7 38 38 H 0.96999 * 120.00847 * 265.00513 * 15 2 1 39 39 H 1.08005 * 122.89931 * 0.02562 * 19 18 16 40 40 H 1.08999 * 110.49058 * 240.12820 * 24 22 21 41 41 H 1.09001 * 110.49140 * 2.77809 * 24 22 21 42 42 H 1.09000 * 110.90734 * 139.07761 * 25 24 22 43 43 H 1.09001 * 110.90752 * 262.64852 * 25 24 22 44 44 H 1.08995 * 110.61896 * 81.47318 * 26 25 24 45 45 H 1.09001 * 110.61943 * 204.47964 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1906 6 6 4.3343 0.2340 1.7613 7 6 4.0849 -1.9160 0.6024 8 1 3.5519 -2.8540 0.5528 9 6 5.3628 -1.8148 0.0698 10 7 6.0424 -0.6949 0.1981 11 14 6.1178 -3.2680 -0.8288 12 1 5.1567 -4.3998 -0.8351 13 1 6.4318 -2.8767 -2.2266 14 1 7.3657 -3.6826 -0.1387 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3572 17 8 1.8579 1.1623 -2.4117 18 6 2.6354 -0.7101 -3.5549 19 6 2.9971 -2.0152 -3.6334 20 7 3.3966 -2.3908 -4.8224 21 6 3.4089 -1.4948 -5.7563 22 6 3.8408 -1.7411 -7.1789 23 1 3.5005 -0.9248 -7.8160 24 6 5.3761 -1.8547 -7.2482 25 6 5.6259 -3.2609 -7.8458 26 6 4.2741 -3.5629 -8.5413 27 8 3.2956 -2.9861 -7.6467 28 16 2.8648 0.0073 -5.1479 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6052 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1371 34 1 4.6214 0.9328 0.9756 35 1 5.2293 -0.2053 2.2017 36 1 3.7729 0.7634 2.5311 37 1 6.9352 -0.6241 -0.1743 38 1 2.2490 -1.6319 -1.1526 39 1 2.9558 -2.6872 -2.7889 40 1 5.7866 -1.0843 -7.9009 41 1 5.8095 -1.7817 -6.2507 42 1 6.4394 -3.2364 -8.5709 43 1 5.8301 -3.9872 -7.0591 44 1 4.2289 -3.0815 -9.5181 45 1 4.1223 -4.6383 -8.6348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733056865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:27 Heat of formation + Delta-G solvation = -9.481393 kcal Electronic energy + Delta-G solvation = -27961.061425 eV Core-core repulsion = 24106.493366 eV Total energy + Delta-G solvation = -3854.568059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.20953 -39.37909 -38.48324 -36.30980 -34.02556 -32.48697 -31.97529 -31.12017 -30.16690 -28.47403 -26.17645 -25.64781 -25.49523 -23.10743 -22.27001 -21.71030 -21.22869 -20.05790 -19.24416 -18.24654 -17.18213 -16.65561 -16.53833 -15.82264 -15.42259 -15.21133 -14.99299 -14.77164 -14.14639 -13.91743 -13.82388 -13.61778 -13.54229 -13.33136 -13.04556 -12.89041 -12.23141 -11.98600 -11.92569 -11.85520 -11.48790 -11.46172 -11.43879 -11.18615 -11.01486 -10.94952 -10.73593 -10.41615 -10.24873 -10.11118 -10.08255 -9.91505 -9.87178 -9.27931 -9.26237 -8.80947 -8.58175 -8.35319 -6.79860 -5.80468 -3.27117 0.41082 1.23770 1.78322 2.68107 3.30915 3.37874 3.41633 3.62463 3.69301 3.89348 3.97467 4.40547 4.41218 4.57090 4.64756 4.82502 5.00872 5.19428 5.25038 5.27927 5.40059 5.46439 5.46912 5.52630 5.55451 5.63509 5.76082 5.85243 5.88545 5.95971 6.13616 6.17433 6.22521 6.42117 6.48669 6.57392 6.75735 6.85855 7.15303 7.45762 7.68977 7.78425 7.83289 8.12398 8.34526 8.74923 9.17915 9.80010 10.31131 11.23541 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012171 B = 0.004187 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.008890 B = 6685.980015 C = 8199.682167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.120 3.880 3 H 0.079 0.921 4 C 0.142 3.858 5 N -0.601 5.601 6 C 0.166 3.834 7 C -0.261 4.261 8 H 0.068 0.932 9 C 0.015 3.985 10 N -0.898 5.898 11 Si 0.886 3.114 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.290 1.290 15 N -0.672 5.672 16 C 0.593 3.407 17 O -0.555 6.555 18 C -0.267 4.267 19 C 0.090 3.910 20 N -0.451 5.451 21 C 0.021 3.979 22 C 0.160 3.840 23 H 0.091 0.909 24 C -0.145 4.145 25 C -0.151 4.151 26 C 0.046 3.954 27 O -0.354 6.354 28 S 0.222 5.778 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.024 0.976 35 H 0.052 0.948 36 H -0.009 1.009 37 H 0.252 0.748 38 H 0.405 0.595 39 H 0.183 0.817 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 -1.962 -13.894 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.012 3.988 3 H 0.097 0.903 4 C 0.014 3.986 5 N -0.324 5.324 6 C 0.022 3.978 7 C -0.390 4.390 8 H 0.085 0.915 9 C -0.184 4.184 10 N -0.542 5.542 11 Si 0.716 3.284 12 H -0.200 1.200 13 H -0.213 1.213 14 H -0.216 1.216 15 N -0.321 5.321 16 C 0.377 3.623 17 O -0.436 6.436 18 C -0.391 4.391 19 C -0.068 4.068 20 N -0.165 5.165 21 C -0.255 4.255 22 C 0.098 3.902 23 H 0.109 0.891 24 C -0.185 4.185 25 C -0.189 4.189 26 C -0.031 4.031 27 O -0.272 6.272 28 S 0.479 5.521 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.010 0.990 37 H 0.063 0.937 38 H 0.241 0.759 39 H 0.200 0.800 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.232 -0.698 -14.468 15.401 hybrid contribution 1.000 -1.734 0.243 2.017 sum -4.231 -2.432 -14.226 15.039 Atomic orbital electron populations 1.22161 0.96596 1.01444 1.01715 1.21935 0.91977 0.98475 0.86446 0.90262 1.21206 0.86028 0.97946 0.93457 1.43869 0.98846 1.22469 1.67201 1.20878 0.93005 0.90142 0.93804 1.19124 0.99372 0.89164 1.31360 0.91453 1.25104 0.98118 0.96337 0.98857 1.70087 1.11699 1.24905 1.47527 0.86467 0.79588 0.82298 0.80095 1.19957 1.21273 1.21635 1.45530 1.64208 1.14345 1.07992 1.16599 0.77776 0.85871 0.82007 1.90767 1.52432 1.15035 1.85346 1.25947 1.14606 0.98704 0.99883 1.22250 0.96357 0.93172 0.94997 1.65985 1.16037 1.34839 0.99612 1.27278 1.04111 0.94054 1.00030 1.21125 0.93489 0.89033 0.86531 0.89144 1.23003 0.93743 0.98277 1.03439 1.23113 0.98137 0.96896 1.00732 1.23634 0.87085 0.99551 0.92801 1.89043 1.40816 1.34374 1.62968 1.83749 1.56333 1.11509 1.00503 0.92866 0.92024 0.92874 0.93248 0.92752 0.95744 0.92922 0.99027 0.93750 0.75880 0.80046 0.89677 0.89654 0.89948 0.89941 0.91925 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.48 37.15 0.35 -2.04 16 2 C 0.12 2.20 2.88 -67.93 -0.20 2.01 16 3 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16 4 C 0.14 2.69 5.36 -4.04 -0.02 2.67 16 5 N -0.60 -14.16 2.82 -181.11 -0.51 -14.67 16 6 C 0.17 4.05 8.99 59.85 0.54 4.59 16 7 C -0.26 -6.55 8.01 -15.06 -0.12 -6.67 16 8 H 0.07 1.63 7.83 -52.49 -0.41 1.22 16 9 C 0.02 0.40 5.38 -17.43 -0.09 0.31 16 10 N -0.90 -25.36 10.13 55.49 0.56 -24.80 16 11 Si 0.89 21.04 29.56 -169.99 -5.02 16.02 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 15 N -0.67 -13.01 4.47 -55.12 -0.25 -13.25 16 16 C 0.59 12.17 7.75 -12.85 -0.10 12.07 16 17 O -0.56 -12.65 16.63 5.21 0.09 -12.56 16 18 C -0.27 -4.96 6.48 -37.10 -0.24 -5.20 16 19 C 0.09 1.62 10.93 -18.85 -0.21 1.42 16 20 N -0.45 -8.00 10.48 -11.50 -0.12 -8.12 16 21 C 0.02 0.32 6.08 -13.29 -0.08 0.24 16 22 C 0.16 1.94 3.93 -27.31 -0.11 1.83 16 23 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 24 C -0.15 -1.52 6.63 -25.20 -0.17 -1.69 16 25 C -0.15 -1.38 7.16 -24.72 -0.18 -1.56 16 26 C 0.05 0.42 7.72 38.21 0.29 0.71 16 27 O -0.35 -4.65 11.17 -35.23 -0.39 -5.05 16 28 S 0.22 3.42 23.01 -107.50 -2.47 0.95 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.88 8.04 -51.93 -0.42 0.46 16 33 H 0.05 0.94 7.86 -51.92 -0.41 0.53 16 34 H 0.02 0.66 7.43 -51.93 -0.39 0.27 16 35 H 0.05 1.39 7.04 -51.93 -0.37 1.02 16 36 H -0.01 -0.19 7.83 -51.93 -0.41 -0.60 16 37 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.40 7.64 6.11 -40.82 -0.25 7.39 16 39 H 0.18 3.11 7.15 -52.48 -0.38 2.73 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 1.09 7.69 -51.93 -0.40 0.69 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 382.52 15.07 5.76 5.76 Total: -1.00 -32.28 382.52 -9.43 -41.71 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.75 Total: 5.32 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -0.32 Total: 8.69 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.32 Total: -60.84 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.31 Total: -17.61 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -2.47 Total: 0.95 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.28 -9.43 -41.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733056865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.231 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds