Wall clock time and date at job start Sat Apr 11 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47653 * 2 1 4 4 C 1.53004 * 109.47143 * 120.00082 * 2 1 3 5 5 N 1.46499 * 109.47402 * 174.99690 * 4 2 1 6 6 C 1.46505 * 119.99860 * 89.99711 * 5 4 2 7 7 C 1.36932 * 120.00119 * 270.00096 * 5 4 2 8 8 H 1.07996 * 119.99787 * 334.61658 * 7 5 4 9 9 C 1.38818 * 120.00015 * 154.61908 * 7 5 4 10 10 N 1.31618 * 119.99903 * 3.91074 * 9 7 5 11 11 Si 1.86800 * 119.99547 * 183.90808 * 9 7 5 12 12 H 1.48491 * 109.47600 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.46884 * 120.00248 * 11 9 7 14 14 H 1.48507 * 109.46690 * 239.99647 * 11 9 7 15 15 N 1.46498 * 109.47220 * 239.99475 * 2 1 3 16 16 C 1.34784 * 119.99804 * 84.99760 * 15 2 1 17 17 O 1.21680 * 119.99742 * 0.02562 * 16 15 2 18 18 C 1.46680 * 119.99840 * 180.02562 * 16 15 2 19 19 C 1.35660 * 126.13568 * 359.69475 * 18 16 15 20 20 N 1.30940 * 114.19547 * 179.82263 * 19 18 16 21 21 C 1.29428 * 117.36045 * 0.48542 * 20 19 18 22 22 C 1.50698 * 124.80505 * 179.76535 * 21 20 19 23 23 H 1.08999 * 109.86971 * 164.25433 * 22 21 20 24 24 C 1.54098 * 109.87980 * 285.26432 * 22 21 20 25 25 C 1.54818 * 104.18820 * 121.45115 * 24 22 21 26 26 C 1.54998 * 102.09186 * 20.88317 * 25 24 22 27 27 O 1.43745 * 109.87811 * 43.24857 * 22 21 20 28 28 S 1.70955 * 110.39188 * 359.73137 * 21 20 19 29 29 H 1.08993 * 109.47765 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46936 * 300.00109 * 1 2 3 31 31 H 1.09002 * 109.47128 * 60.00004 * 1 2 3 32 32 H 1.09000 * 109.47067 * 54.99368 * 4 2 1 33 33 H 1.09008 * 109.47142 * 294.99617 * 4 2 1 34 34 H 1.09001 * 109.46885 * 264.46991 * 6 5 4 35 35 H 1.08992 * 109.46925 * 144.46915 * 6 5 4 36 36 H 1.09002 * 109.47244 * 24.46845 * 6 5 4 37 37 H 0.96996 * 119.99876 * 180.02562 * 10 9 7 38 38 H 0.96999 * 120.00847 * 265.00513 * 15 2 1 39 39 H 1.08005 * 122.89931 * 0.02562 * 19 18 16 40 40 H 1.08999 * 110.49058 * 240.12820 * 24 22 21 41 41 H 1.09001 * 110.49140 * 2.77809 * 24 22 21 42 42 H 1.09000 * 110.90734 * 139.07761 * 25 24 22 43 43 H 1.09001 * 110.90752 * 262.64852 * 25 24 22 44 44 H 1.08995 * 110.61896 * 81.47318 * 26 25 24 45 45 H 1.09001 * 110.61943 * 204.47964 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1906 6 6 4.3343 0.2340 1.7613 7 6 4.0849 -1.9160 0.6024 8 1 3.5519 -2.8540 0.5528 9 6 5.3628 -1.8148 0.0698 10 7 6.0424 -0.6949 0.1981 11 14 6.1178 -3.2680 -0.8288 12 1 5.1567 -4.3998 -0.8351 13 1 6.4318 -2.8767 -2.2266 14 1 7.3657 -3.6826 -0.1387 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3572 17 8 1.8579 1.1623 -2.4117 18 6 2.6354 -0.7101 -3.5549 19 6 2.9971 -2.0152 -3.6334 20 7 3.3966 -2.3908 -4.8224 21 6 3.4089 -1.4948 -5.7563 22 6 3.8408 -1.7411 -7.1789 23 1 3.5005 -0.9248 -7.8160 24 6 5.3761 -1.8547 -7.2482 25 6 5.6259 -3.2609 -7.8458 26 6 4.2741 -3.5629 -8.5413 27 8 3.2956 -2.9861 -7.6467 28 16 2.8648 0.0073 -5.1479 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6052 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1371 34 1 4.6214 0.9328 0.9756 35 1 5.2293 -0.2053 2.2017 36 1 3.7729 0.7634 2.5311 37 1 6.9352 -0.6241 -0.1743 38 1 2.2490 -1.6319 -1.1526 39 1 2.9558 -2.6872 -2.7889 40 1 5.7866 -1.0843 -7.9009 41 1 5.8095 -1.7817 -6.2507 42 1 6.4394 -3.2364 -8.5709 43 1 5.8301 -3.9872 -7.0591 44 1 4.2289 -3.0815 -9.5181 45 1 4.1223 -4.6383 -8.6348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733056865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:26 Heat of formation + Delta-G solvation = -31.329912 kcal Electronic energy + Delta-G solvation = -27962.008848 eV Core-core repulsion = 24106.493366 eV Total energy + Delta-G solvation = -3855.515482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.43899 -40.66193 -39.71985 -38.03256 -35.77170 -33.66145 -33.19486 -32.63578 -31.54712 -29.69620 -28.04851 -27.37319 -26.63677 -24.25590 -23.71086 -22.89199 -22.49036 -21.55602 -20.67067 -19.47370 -18.81643 -18.32416 -17.44388 -17.06671 -16.83818 -16.69282 -16.27421 -16.18383 -15.59931 -15.48328 -15.20802 -14.98966 -14.77159 -14.60635 -14.52615 -14.32046 -13.87285 -13.37912 -13.05276 -12.96674 -12.79137 -12.77778 -12.73979 -12.70290 -12.58630 -12.21810 -12.11502 -12.01744 -11.97199 -11.78005 -11.70717 -11.40714 -10.92261 -10.65981 -10.62189 -10.60774 -10.13568 -9.86218 -8.75355 -7.83312 -5.29370 -0.91126 -0.02784 0.48610 1.31806 1.39153 1.45153 1.49825 2.10480 2.38460 2.46841 2.75163 2.99142 3.34037 3.54920 3.64583 3.69468 3.79822 3.85628 4.03283 4.09736 4.17087 4.26927 4.33647 4.42967 4.52916 4.68474 4.76396 4.77134 4.84986 4.85944 4.90440 4.91943 4.97764 5.01042 5.13238 5.17225 5.39122 5.42265 5.63730 5.66095 5.77667 5.80169 6.34394 6.47967 6.57002 7.16474 7.19765 7.88173 8.34812 9.20821 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012171 B = 0.004187 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.008890 B = 6685.980015 C = 8199.682167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.122 3.878 3 H 0.046 0.954 4 C 0.142 3.858 5 N -0.615 5.615 6 C 0.181 3.819 7 C -0.245 4.245 8 H 0.082 0.918 9 C -0.035 4.035 10 N -0.933 5.933 11 Si 0.936 3.064 12 H -0.253 1.253 13 H -0.303 1.303 14 H -0.299 1.299 15 N -0.671 5.671 16 C 0.589 3.411 17 O -0.587 6.587 18 C -0.306 4.306 19 C 0.094 3.906 20 N -0.480 5.480 21 C 0.032 3.968 22 C 0.153 3.847 23 H 0.123 0.877 24 C -0.146 4.146 25 C -0.148 4.148 26 C 0.043 3.957 27 O -0.383 6.383 28 S 0.257 5.743 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.078 0.922 34 H -0.011 1.011 35 H 0.025 0.975 36 H 0.023 0.977 37 H 0.241 0.759 38 H 0.407 0.593 39 H 0.184 0.816 40 H 0.118 0.882 41 H 0.055 0.945 42 H 0.112 0.888 43 H 0.059 0.941 44 H 0.092 0.908 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.228 -2.981 -15.305 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 H 0.065 0.935 4 C 0.015 3.985 5 N -0.338 5.338 6 C 0.036 3.964 7 C -0.375 4.375 8 H 0.100 0.900 9 C -0.231 4.231 10 N -0.580 5.580 11 Si 0.766 3.234 12 H -0.177 1.177 13 H -0.231 1.231 14 H -0.227 1.227 15 N -0.320 5.320 16 C 0.375 3.625 17 O -0.471 6.471 18 C -0.431 4.431 19 C -0.065 4.065 20 N -0.195 5.195 21 C -0.243 4.243 22 C 0.092 3.908 23 H 0.140 0.860 24 C -0.185 4.185 25 C -0.186 4.186 26 C -0.033 4.033 27 O -0.302 6.302 28 S 0.515 5.485 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.007 0.993 35 H 0.044 0.956 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.243 0.757 39 H 0.201 0.799 40 H 0.137 0.863 41 H 0.074 0.926 42 H 0.130 0.870 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.468 -1.748 -15.865 17.222 hybrid contribution 1.335 -1.432 0.649 2.063 sum -5.133 -3.180 -15.216 16.370 Atomic orbital electron populations 1.22039 0.93364 1.02869 1.02321 1.21866 0.94386 0.96409 0.85903 0.93529 1.21414 0.83123 0.99565 0.94398 1.44094 1.00883 1.21745 1.67039 1.20554 0.92827 0.89745 0.93272 1.19470 0.98900 0.90089 1.29086 0.90013 1.25647 0.99130 0.97942 1.00355 1.70264 1.11590 1.26759 1.49424 0.85648 0.78885 0.80890 0.77966 1.17705 1.23063 1.22654 1.45596 1.63880 1.14367 1.08113 1.16857 0.77318 0.85587 0.82764 1.90732 1.54102 1.16288 1.85968 1.25882 1.16899 0.99409 1.00869 1.22332 0.95670 0.93033 0.95449 1.66057 1.17650 1.35849 0.99904 1.28066 1.01485 0.93586 1.01188 1.21522 0.94533 0.90002 0.84786 0.85970 1.23064 0.92447 1.00301 1.02687 1.23123 0.99372 0.95368 1.00743 1.23889 0.85901 1.00246 0.93258 1.89006 1.42352 1.34857 1.63960 1.83517 1.55533 1.11005 0.98408 0.90965 0.89577 0.94122 0.91177 0.90398 0.99306 0.95588 0.95843 0.94878 0.75667 0.79904 0.86337 0.92592 0.86972 0.92162 0.89013 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 9.48 71.98 0.68 -3.39 16 2 C 0.12 4.38 2.88 44.99 0.13 4.51 16 3 H 0.05 2.00 7.58 -2.39 -0.02 1.98 16 4 C 0.14 5.05 5.36 86.38 0.46 5.51 16 5 N -0.61 -28.50 2.82 -726.92 -2.05 -30.55 16 6 C 0.18 8.92 8.99 127.77 1.15 10.07 16 7 C -0.25 -12.16 8.01 84.04 0.67 -11.48 16 8 H 0.08 3.79 7.83 -2.91 -0.02 3.77 16 9 C -0.04 -1.89 5.38 84.86 0.46 -1.43 16 10 N -0.93 -54.48 10.13 21.65 0.22 -54.26 16 11 Si 0.94 43.91 29.56 68.60 2.03 45.94 16 12 H -0.25 -10.85 7.11 99.48 0.71 -10.15 16 13 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 14 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 15 N -0.67 -25.96 4.47 -446.51 -2.00 -27.96 16 16 C 0.59 24.65 7.75 86.45 0.67 25.32 16 17 O -0.59 -27.47 16.63 -4.29 -0.07 -27.54 16 18 C -0.31 -11.53 6.48 23.88 0.15 -11.38 16 19 C 0.09 3.42 10.93 84.23 0.92 4.34 16 20 N -0.48 -17.02 10.48 -190.30 -1.99 -19.02 16 21 C 0.03 0.95 6.08 88.46 0.54 1.48 16 22 C 0.15 3.40 3.93 30.22 0.12 3.52 16 23 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 24 C -0.15 -2.76 6.63 31.59 0.21 -2.55 16 25 C -0.15 -2.39 7.16 31.90 0.23 -2.16 16 26 C 0.04 0.66 7.72 72.67 0.56 1.23 16 27 O -0.38 -9.34 11.17 -148.98 -1.66 -11.01 16 28 S 0.26 7.83 23.01 -56.49 -1.30 6.53 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 2.25 8.04 -2.39 -0.02 2.23 16 33 H 0.08 2.44 7.86 -2.38 -0.02 2.42 16 34 H -0.01 -0.64 7.43 -2.39 -0.02 -0.66 16 35 H 0.03 1.38 7.04 -2.39 -0.02 1.37 16 36 H 0.02 0.98 7.83 -2.39 -0.02 0.96 16 37 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 38 H 0.41 15.19 6.11 -92.71 -0.57 14.62 16 39 H 0.18 6.34 7.15 -2.91 -0.02 6.32 16 40 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 1.40 7.69 -2.39 -0.02 1.38 16 42 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -72.40 382.52 0.56 -71.84 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.44 Total: 22.45 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: 6.95 Total: 23.58 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -5.82 Total: -131.79 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -1.73 Total: -38.55 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 7.83 SS G_CDS: -1.30 Total: 6.53 kcal Total: -72.40 0.56 -71.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733056865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.506 kcal (2) G-P(sol) polarization free energy of solvation -72.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds