Wall clock time and date at job start Sat Apr 11 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46650 * 2 1 4 4 N 1.46498 * 109.47260 * 120.00376 * 2 1 3 5 5 C 1.34771 * 119.99873 * 275.00018 * 4 2 1 6 6 O 1.21699 * 120.00501 * 0.02562 * 5 4 2 7 7 C 1.46589 * 119.99968 * 180.02562 * 5 4 2 8 8 C 1.36641 * 125.45865 * 179.97438 * 7 5 4 9 9 C 1.37479 * 113.29752 * 180.02562 * 8 7 5 10 10 C 1.33813 * 115.09758 * 0.02562 * 9 8 7 11 11 S 1.70619 * 110.95891 * 359.72547 * 10 9 8 12 12 C 1.50704 * 109.46878 * 240.00613 * 2 1 3 13 13 O 1.21276 * 119.99650 * 239.99677 * 12 2 1 14 14 N 1.34773 * 119.99951 * 59.99896 * 12 2 1 15 15 C 1.46503 * 119.99809 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.47315 * 179.97438 * 15 14 12 17 17 H 1.08997 * 109.46758 * 64.99685 * 16 15 14 18 18 C 1.52993 * 109.47103 * 184.99791 * 16 15 14 19 19 N 1.46501 * 109.47016 * 304.99843 * 16 15 14 20 20 C 1.46499 * 120.00202 * 300.00212 * 19 16 15 21 21 C 1.36936 * 120.00067 * 119.99820 * 19 16 15 22 22 H 1.08000 * 119.99945 * 23.06744 * 21 19 16 23 23 C 1.38814 * 120.00211 * 203.06984 * 21 19 16 24 24 N 1.31620 * 119.99976 * 11.69852 * 23 21 19 25 25 Si 1.86797 * 120.00385 * 191.70515 * 23 21 19 26 26 H 1.48503 * 109.46549 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47313 * 119.99245 * 25 23 21 28 28 H 1.48492 * 109.47170 * 239.99898 * 25 23 21 29 29 H 1.08993 * 109.47274 * 59.99520 * 1 2 3 30 30 H 1.09003 * 109.47255 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47316 * 299.99239 * 1 2 3 32 32 H 0.97004 * 119.99922 * 94.99855 * 4 2 1 33 33 H 1.08002 * 123.35599 * 359.97438 * 8 7 5 34 34 H 1.07997 * 122.44636 * 180.02562 * 9 8 7 35 35 H 1.07999 * 124.52280 * 180.02562 * 10 9 8 36 36 H 0.97000 * 120.00277 * 359.97438 * 14 12 2 37 37 H 1.09007 * 109.47460 * 59.99588 * 15 14 12 38 38 H 1.09004 * 109.47163 * 299.99633 * 15 14 12 39 39 H 1.08993 * 109.47541 * 300.00016 * 18 16 15 40 40 H 1.09007 * 109.47328 * 60.00307 * 18 16 15 41 41 H 1.09006 * 109.46908 * 179.97438 * 18 16 15 42 42 H 1.09003 * 109.47298 * 93.93950 * 20 19 16 43 43 H 1.09003 * 109.47538 * 213.94462 * 20 19 16 44 44 H 1.09007 * 109.46886 * 333.94468 * 20 19 16 45 45 H 0.96996 * 120.00573 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8572 1.1623 2.4120 7 6 2.6363 -0.7093 3.5538 8 6 2.8096 -0.1389 4.7833 9 6 3.2824 -1.0179 5.7287 10 6 3.4902 -2.2651 5.2906 11 16 3.0886 -2.4064 3.6384 12 6 2.0323 -0.7103 -1.2306 13 8 2.7296 -1.6963 -1.1194 14 7 1.7067 -0.2497 -2.4546 15 6 2.1945 -0.9406 -3.6509 16 6 1.6841 -0.2196 -4.9001 17 1 2.1187 0.7789 -4.9462 18 6 2.0883 -1.0099 -6.1461 19 7 0.2240 -0.1144 -4.8409 20 6 -0.5955 -1.3267 -4.7722 21 6 -0.3746 1.1171 -4.8496 22 1 0.1468 1.9681 -5.2624 23 6 -1.6517 1.2718 -4.3279 24 7 -2.1961 0.3033 -3.6223 25 14 -2.5976 2.8545 -4.6273 26 1 -1.7700 3.7789 -5.4434 27 1 -3.8580 2.5486 -5.3505 28 1 -2.9164 3.4944 -3.3258 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8901 32 1 2.2491 -1.6319 1.1525 33 1 2.5972 0.8994 4.9914 34 1 3.4721 -0.7233 6.7503 35 1 3.8580 -3.0754 5.9025 36 1 1.1487 0.5387 -2.5435 37 1 1.8308 -1.9682 -3.6508 38 1 3.2845 -0.9410 -3.6511 39 1 3.1746 -1.0882 -6.1902 40 1 1.6537 -2.0085 -6.0999 41 1 1.7243 -0.4965 -7.0360 42 1 -0.8137 -1.5593 -3.7299 43 1 -1.5289 -1.1654 -5.3116 44 1 -0.0537 -2.1576 -5.2241 45 1 -3.0886 0.4111 -3.2580 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734045415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:30 Heat of formation + Delta-G solvation = -17.431076 kcal Electronic energy + Delta-G solvation = -27419.375373 eV Core-core repulsion = 23564.462590 eV Total energy + Delta-G solvation = -3854.912783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.21943 -39.06835 -37.64598 -36.78036 -34.82253 -33.80079 -32.25553 -31.10619 -29.53166 -29.18094 -26.08512 -25.93591 -25.36807 -23.74018 -22.99969 -21.34443 -20.03208 -19.57686 -19.21259 -18.79290 -16.97850 -16.78151 -16.33678 -15.85955 -15.52991 -15.30161 -15.16453 -14.73140 -14.42611 -14.04385 -13.76251 -13.41155 -13.17996 -12.99973 -12.87928 -12.73978 -12.55081 -12.48705 -12.22292 -11.98701 -11.95012 -11.63373 -11.35639 -11.18583 -11.12909 -10.84860 -10.74402 -10.45224 -10.31883 -10.13815 -9.91418 -9.82662 -9.56302 -9.22465 -9.01092 -8.83657 -8.64370 -8.48170 -6.86084 -5.80838 -3.29034 0.29453 1.24236 1.65335 2.18449 2.89170 2.96812 3.13229 3.32454 3.41671 3.42136 3.78824 4.41137 4.64695 4.75068 5.05300 5.06699 5.22677 5.31701 5.32259 5.33914 5.36243 5.55285 5.69601 5.88571 5.91119 5.95049 6.04369 6.05150 6.08115 6.10020 6.28287 6.34810 6.38255 6.57102 6.65132 6.75992 6.84786 7.01475 7.34987 7.42160 7.68214 7.74402 8.00764 8.13338 8.30206 8.62252 9.14889 9.77318 10.27024 11.21863 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015666 B = 0.002813 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.881321 B = 9952.266544 C =11130.744142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.128 3.872 3 H 0.113 0.887 4 N -0.705 5.705 5 C 0.592 3.408 6 O -0.530 6.530 7 C -0.262 4.262 8 C -0.058 4.058 9 C -0.151 4.151 10 C -0.235 4.235 11 S 0.211 5.789 12 C 0.508 3.492 13 O -0.561 6.561 14 N -0.690 5.690 15 C 0.108 3.892 16 C 0.157 3.843 17 H 0.069 0.931 18 C -0.158 4.158 19 N -0.594 5.594 20 C 0.163 3.837 21 C -0.261 4.261 22 H 0.068 0.932 23 C 0.007 3.993 24 N -0.900 5.900 25 Si 0.900 3.100 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.290 1.290 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.406 0.594 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.168 0.832 36 H 0.417 0.583 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.045 0.955 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.029 0.971 43 H 0.042 0.958 44 H -0.003 1.003 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.235 -5.377 13.206 17.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 H 0.131 0.869 4 N -0.358 5.358 5 C 0.378 3.622 6 O -0.408 6.408 7 C -0.383 4.383 8 C -0.092 4.092 9 C -0.182 4.182 10 C -0.373 4.373 11 S 0.478 5.522 12 C 0.293 3.707 13 O -0.442 6.442 14 N -0.340 5.340 15 C -0.019 4.019 16 C 0.049 3.951 17 H 0.087 0.913 18 C -0.218 4.218 19 N -0.317 5.317 20 C 0.019 3.981 21 C -0.391 4.391 22 H 0.085 0.915 23 C -0.192 4.192 24 N -0.544 5.544 25 Si 0.730 3.270 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.217 1.217 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.243 0.757 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.186 0.814 36 H 0.255 0.745 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.016 0.984 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.352 -6.442 12.286 17.309 hybrid contribution -0.831 1.750 1.001 2.181 sum 9.520 -4.692 13.288 17.006 Atomic orbital electron populations 1.22115 0.91587 1.03442 1.04389 1.20829 0.96486 0.97699 0.83017 0.86915 1.45629 1.67024 1.14506 1.08634 1.16893 0.77499 0.86122 0.81709 1.90837 1.50491 1.14868 1.84595 1.24654 1.15874 0.98690 0.99031 1.20808 0.96635 1.01517 0.90221 1.20045 1.04106 0.92542 1.01516 1.25369 1.08615 1.02306 1.00994 1.83283 1.58327 1.05827 1.04761 1.20365 0.80459 0.84741 0.85146 1.90626 1.39599 1.26997 1.86949 1.45769 1.51638 1.32207 1.04429 1.21988 0.97206 0.96951 0.85720 1.20653 0.86234 0.97357 0.90897 0.91286 1.22168 0.99385 1.00937 0.99272 1.43947 0.98441 1.03395 1.85911 1.20754 0.93053 0.85183 0.99119 1.19247 0.99232 0.86948 1.33663 0.91453 1.24993 0.98870 0.97398 0.97915 1.70072 1.15863 1.32089 1.36368 0.86262 0.80030 0.83149 0.77531 1.20435 1.21758 1.21652 0.88948 0.91930 0.91491 0.75738 0.82826 0.83750 0.81412 0.74485 0.92249 0.92756 0.93574 0.92957 0.92400 0.95284 0.93920 0.98410 0.93752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.38 37.16 0.35 -2.21 16 2 C 0.13 2.04 2.98 -69.08 -0.21 1.83 16 3 H 0.11 1.80 7.58 -51.93 -0.39 1.41 16 4 N -0.71 -10.48 4.95 -56.27 -0.28 -10.76 16 5 C 0.59 8.95 7.75 -12.89 -0.10 8.85 16 6 O -0.53 -9.45 16.50 5.19 0.09 -9.37 16 7 C -0.26 -3.23 6.45 -36.79 -0.24 -3.47 16 8 C -0.06 -0.63 10.01 -40.44 -0.40 -1.03 16 9 C -0.15 -1.27 10.15 -41.41 -0.42 -1.69 16 10 C -0.23 -1.86 10.92 29.18 0.32 -1.54 16 11 S 0.21 2.01 22.16 -107.50 -2.38 -0.37 16 12 C 0.51 9.01 7.22 -10.99 -0.08 8.93 16 13 O -0.56 -10.94 15.84 5.56 0.09 -10.86 16 14 N -0.69 -12.44 5.28 -60.29 -0.32 -12.75 16 15 C 0.11 1.90 4.97 -4.04 -0.02 1.88 16 16 C 0.16 2.87 2.87 -67.93 -0.19 2.67 16 17 H 0.07 1.25 7.86 -51.93 -0.41 0.84 16 18 C -0.16 -2.51 9.18 37.15 0.34 -2.16 16 19 N -0.59 -13.09 2.29 -173.48 -0.40 -13.48 16 20 C 0.16 3.72 8.10 59.85 0.49 4.20 16 21 C -0.26 -6.37 9.32 -15.06 -0.14 -6.51 16 22 H 0.07 1.64 7.82 -52.49 -0.41 1.23 16 23 C 0.01 0.19 5.12 -17.43 -0.09 0.10 16 24 N -0.90 -23.52 10.65 55.49 0.59 -22.93 16 25 Si 0.90 20.46 29.57 -169.99 -5.03 15.43 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 29 H 0.09 1.67 7.56 -51.93 -0.39 1.28 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.41 5.74 6.90 -40.82 -0.28 5.45 16 33 H 0.15 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.42 7.96 7.31 -40.82 -0.30 7.66 16 37 H 0.06 1.12 7.84 -51.93 -0.41 0.72 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.84 6.66 -51.93 -0.35 0.49 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.03 0.72 7.41 -51.93 -0.39 0.33 16 43 H 0.04 1.06 7.23 -51.93 -0.38 0.69 16 44 H 0.00 -0.05 6.43 -51.93 -0.33 -0.39 16 45 H 0.25 6.55 8.31 -40.82 -0.34 6.22 16 LS Contribution 386.78 15.07 5.83 5.83 Total: -1.00 -28.81 386.78 -8.76 -37.56 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -6.55 Total: 11.87 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -0.40 Total: 9.83 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.40 Total: -59.93 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.17 Total: -20.22 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.38 Total: -0.37 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -28.81 -8.76 -37.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734045415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.134 kcal (2) G-P(sol) polarization free energy of solvation -28.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds