Wall clock time and date at job start Sat Apr 11 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47232 * 2 1 4 4 N 1.46496 * 109.47231 * 240.00319 * 2 1 3 5 5 C 1.34784 * 120.00216 * 85.00181 * 4 2 1 6 6 O 1.21701 * 119.99410 * 359.97438 * 5 4 2 7 7 C 1.46576 * 120.00347 * 180.02562 * 5 4 2 8 8 C 1.36645 * 125.46035 * 179.97438 * 7 5 4 9 9 C 1.37467 * 113.29850 * 179.97438 * 8 7 5 10 10 C 1.33819 * 115.10304 * 0.02562 * 9 8 7 11 11 S 1.70613 * 110.95149 * 359.76351 * 10 9 8 12 12 C 1.50698 * 109.47516 * 120.00262 * 2 1 3 13 13 O 1.21283 * 120.00351 * 119.99778 * 12 2 1 14 14 N 1.34779 * 120.00083 * 300.00669 * 12 2 1 15 15 C 1.46498 * 120.00262 * 179.97438 * 14 12 2 16 16 C 1.53003 * 109.47157 * 179.97438 * 15 14 12 17 17 H 1.09004 * 109.47055 * 294.99737 * 16 15 14 18 18 C 1.52999 * 109.47011 * 174.99934 * 16 15 14 19 19 N 1.46499 * 109.47110 * 54.99914 * 16 15 14 20 20 C 1.46501 * 120.00377 * 59.99904 * 19 16 15 21 21 C 1.36944 * 119.99647 * 240.00304 * 19 16 15 22 22 H 1.07992 * 120.00031 * 23.09283 * 21 19 16 23 23 C 1.38812 * 119.99570 * 203.09900 * 21 19 16 24 24 N 1.31621 * 120.00227 * 12.99133 * 23 21 19 25 25 Si 1.86799 * 119.99842 * 192.99049 * 23 21 19 26 26 H 1.48500 * 109.47093 * 90.00003 * 25 23 21 27 27 H 1.48502 * 109.47148 * 210.00028 * 25 23 21 28 28 H 1.48501 * 109.47218 * 330.00100 * 25 23 21 29 29 H 1.09000 * 109.47640 * 59.99586 * 1 2 3 30 30 H 1.08998 * 109.47359 * 299.99389 * 1 2 3 31 31 H 1.09000 * 109.47232 * 179.97438 * 1 2 3 32 32 H 0.97004 * 120.00726 * 265.00066 * 4 2 1 33 33 H 1.08004 * 123.35031 * 359.94468 * 8 7 5 34 34 H 1.08001 * 122.45159 * 180.02562 * 9 8 7 35 35 H 1.08000 * 124.52190 * 179.97438 * 10 9 8 36 36 H 0.97007 * 119.99559 * 359.97438 * 14 12 2 37 37 H 1.08997 * 109.46609 * 299.99283 * 15 14 12 38 38 H 1.09001 * 109.47312 * 59.99473 * 15 14 12 39 39 H 1.08994 * 109.47465 * 59.99750 * 18 16 15 40 40 H 1.08998 * 109.47148 * 180.02562 * 18 16 15 41 41 H 1.09004 * 109.47050 * 299.99806 * 18 16 15 42 42 H 1.08995 * 109.47066 * 95.12358 * 20 19 16 43 43 H 1.09001 * 109.47217 * 215.12880 * 20 19 16 44 44 H 1.09002 * 109.46868 * 335.12705 * 20 19 16 45 45 H 0.96995 * 120.00093 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3572 6 8 1.8572 1.1626 -2.4118 7 6 2.6351 -0.7091 -3.5541 8 6 2.8074 -0.1388 -4.7839 9 6 3.2793 -1.0178 -5.7296 10 6 3.4864 -2.2653 -5.2920 11 16 3.0986 -2.4033 -3.6362 12 6 2.0323 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2501 2.4546 15 6 2.1946 -0.9411 3.6507 16 6 1.6852 -0.2195 4.9000 17 1 2.1205 0.7788 4.9459 18 6 2.0895 -1.0100 6.1460 19 7 0.2252 -0.1134 4.8414 20 6 -0.5952 -1.3252 4.7733 21 6 -0.3727 1.1186 4.8501 22 1 0.1802 1.9893 4.5302 23 6 -1.6892 1.2481 5.2705 24 7 -2.2813 0.2529 5.8961 25 14 -2.6207 2.8349 4.9482 26 1 -3.3094 2.7467 3.6355 27 1 -3.6255 3.0457 6.0211 28 1 -1.6678 3.9737 4.9317 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2490 -1.6317 -1.1528 33 1 2.5937 0.8992 -4.9922 34 1 3.4690 -0.7232 -6.7512 35 1 3.8535 -3.0757 -5.9042 36 1 1.1492 0.5387 2.5436 37 1 1.8309 -1.9685 3.6504 38 1 3.2847 -0.9415 3.6508 39 1 3.1757 -1.0890 6.1896 40 1 1.7261 -0.4962 7.0360 41 1 1.6541 -2.0083 6.1001 42 1 -0.9177 -1.6025 5.7768 43 1 -1.4693 -1.1377 4.1495 44 1 -0.0090 -2.1371 4.3428 45 1 -3.2014 0.3433 6.1894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734045418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:35 Heat of formation + Delta-G solvation = -17.691352 kcal Electronic energy + Delta-G solvation = -27162.559526 eV Core-core repulsion = 23307.635456 eV Total energy + Delta-G solvation = -3854.924069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.36521 -39.20646 -37.72981 -36.81650 -34.96749 -33.93662 -32.25590 -31.21827 -29.61586 -29.24643 -26.07243 -26.04366 -25.46713 -23.85580 -23.03311 -21.46035 -20.18318 -19.67836 -19.27442 -18.88625 -17.03195 -16.85160 -16.47888 -15.94095 -15.66686 -15.44507 -15.20833 -14.82063 -14.55800 -14.06933 -13.88647 -13.57267 -13.27330 -13.07377 -12.91056 -12.79949 -12.63288 -12.56051 -12.33271 -12.21310 -11.97542 -11.57579 -11.47487 -11.26204 -11.11863 -10.87252 -10.80139 -10.45303 -10.32550 -10.25920 -9.95092 -9.82418 -9.72122 -9.34393 -9.11951 -8.90964 -8.67522 -8.61114 -6.85134 -5.79731 -3.28128 0.21523 1.16752 1.57916 2.10698 2.74416 2.80235 3.02491 3.33197 3.40226 3.41549 3.60729 4.41438 4.54922 4.67074 4.88483 4.98214 5.09081 5.15721 5.16205 5.31950 5.36725 5.52620 5.62022 5.67761 5.78972 5.86333 5.87257 5.99969 6.04432 6.14342 6.19176 6.22051 6.27556 6.39256 6.69866 6.77631 6.80435 6.96403 7.29097 7.32051 7.67477 7.73638 7.82971 7.99234 8.31042 8.43585 9.15305 9.78179 10.27700 11.24153 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016746 B = 0.002598 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.674552 B =10776.436798 C =11867.918362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.127 3.873 3 H 0.116 0.884 4 N -0.706 5.706 5 C 0.593 3.407 6 O -0.529 6.529 7 C -0.264 4.264 8 C -0.057 4.057 9 C -0.151 4.151 10 C -0.233 4.233 11 S 0.211 5.789 12 C 0.507 3.493 13 O -0.555 6.555 14 N -0.696 5.696 15 C 0.106 3.894 16 C 0.157 3.843 17 H 0.069 0.931 18 C -0.156 4.156 19 N -0.593 5.593 20 C 0.164 3.836 21 C -0.264 4.264 22 H 0.069 0.931 23 C 0.007 3.993 24 N -0.902 5.902 25 Si 0.902 3.098 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.279 1.279 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.407 0.593 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.169 0.831 36 H 0.413 0.587 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.041 0.959 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.030 0.970 43 H 0.039 0.961 44 H -0.002 1.002 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.526 -5.310 -18.316 21.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 H 0.133 0.867 4 N -0.359 5.359 5 C 0.379 3.621 6 O -0.407 6.407 7 C -0.385 4.385 8 C -0.090 4.090 9 C -0.182 4.182 10 C -0.371 4.371 11 S 0.479 5.521 12 C 0.291 3.709 13 O -0.435 6.435 14 N -0.346 5.346 15 C -0.019 4.019 16 C 0.048 3.952 17 H 0.087 0.913 18 C -0.216 4.216 19 N -0.316 5.316 20 C 0.020 3.980 21 C -0.393 4.393 22 H 0.087 0.913 23 C -0.192 4.192 24 N -0.546 5.546 25 Si 0.732 3.268 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.244 0.756 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.186 0.814 36 H 0.250 0.750 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.017 0.983 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.658 -6.385 -17.251 21.259 hybrid contribution -0.802 1.759 -1.113 2.231 sum 9.856 -4.626 -18.364 21.349 Atomic orbital electron populations 1.22148 0.92131 1.03414 1.04224 1.20816 0.96176 0.97970 0.83182 0.86671 1.45616 1.67200 1.14559 1.08565 1.16895 0.77400 0.86089 0.81690 1.90840 1.50436 1.14846 1.84609 1.24622 1.16060 0.98840 0.98980 1.20812 0.96469 1.01497 0.90237 1.20053 1.04126 0.92484 1.01578 1.25382 1.08517 1.02328 1.00899 1.83279 1.58366 1.05998 1.04506 1.20402 0.80611 0.84819 0.85068 1.90650 1.39177 1.26815 1.86848 1.45830 1.51962 1.32125 1.04691 1.22006 0.97569 0.97085 0.85278 1.20628 0.86495 0.97363 0.90714 0.91285 1.22183 0.98940 1.00814 0.99652 1.43989 0.98599 1.03491 1.85550 1.20726 0.92503 0.85446 0.99339 1.19190 0.95752 0.85977 1.38383 0.91307 1.25035 0.98697 0.97311 0.98188 1.70068 1.12667 1.31445 1.40400 0.86306 0.79850 0.83150 0.77507 1.21400 1.21827 1.20441 0.91008 0.89680 0.91749 0.75642 0.82806 0.83701 0.81361 0.75004 0.91917 0.92335 0.93987 0.92154 0.93173 0.95200 0.94206 0.98311 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.38 37.15 0.35 -1.80 16 2 C 0.13 1.76 2.98 -69.09 -0.21 1.55 16 3 H 0.12 1.59 7.58 -51.93 -0.39 1.20 16 4 N -0.71 -9.36 4.95 -56.28 -0.28 -9.64 16 5 C 0.59 8.15 7.75 -12.90 -0.10 8.05 16 6 O -0.53 -8.69 16.50 5.19 0.09 -8.60 16 7 C -0.26 -2.98 6.45 -36.80 -0.24 -3.22 16 8 C -0.06 -0.56 10.01 -40.44 -0.40 -0.96 16 9 C -0.15 -1.16 10.15 -41.41 -0.42 -1.58 16 10 C -0.23 -1.67 10.92 29.18 0.32 -1.35 16 11 S 0.21 1.82 22.16 -107.50 -2.38 -0.56 16 12 C 0.51 8.01 7.22 -10.99 -0.08 7.93 16 13 O -0.56 -9.98 15.84 5.55 0.09 -9.90 16 14 N -0.70 -11.21 5.28 -60.29 -0.32 -11.53 16 15 C 0.11 1.77 4.93 -4.04 -0.02 1.75 16 16 C 0.16 2.88 2.87 -67.93 -0.19 2.68 16 17 H 0.07 1.26 7.87 -51.93 -0.41 0.85 16 18 C -0.16 -2.66 9.19 37.16 0.34 -2.32 16 19 N -0.59 -13.21 2.28 -173.48 -0.40 -13.61 16 20 C 0.16 3.78 8.01 59.85 0.48 4.26 16 21 C -0.26 -6.50 9.31 -15.06 -0.14 -6.64 16 22 H 0.07 1.64 7.82 -52.49 -0.41 1.23 16 23 C 0.01 0.18 5.10 -17.43 -0.09 0.09 16 24 N -0.90 -24.97 10.72 55.49 0.59 -24.37 16 25 Si 0.90 20.70 29.57 -169.99 -5.03 15.67 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.17 7.56 -51.93 -0.39 0.78 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.41 5.13 6.90 -40.82 -0.28 4.85 16 33 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 35 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.41 6.75 7.31 -40.82 -0.30 6.45 16 37 H 0.06 1.12 6.87 -51.93 -0.36 0.76 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.86 7.67 -51.93 -0.40 0.47 16 42 H 0.03 0.76 7.34 -51.93 -0.38 0.38 16 43 H 0.04 0.99 7.35 -51.93 -0.38 0.61 16 44 H 0.00 -0.03 6.54 -51.93 -0.34 -0.37 16 45 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -30.27 386.89 -8.77 -39.04 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.56 Total: 9.21 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -0.40 Total: 8.46 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.40 Total: -59.15 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.17 Total: -18.50 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.38 Total: -0.56 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.27 -8.77 -39.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734045418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.350 kcal (2) G-P(sol) polarization free energy of solvation -30.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds