Wall clock time and date at job start Sat Apr 11 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47050 * 2 1 4 4 C 1.53002 * 109.47171 * 240.00655 * 2 1 3 5 5 N 1.46499 * 109.47088 * 184.99994 * 4 2 1 6 6 C 1.46506 * 119.99537 * 269.99330 * 5 4 2 7 7 C 1.34777 * 120.00199 * 89.99979 * 5 4 2 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 5 4 9 9 C 1.50702 * 119.99928 * 180.27479 * 7 5 4 10 10 C 1.50700 * 109.46869 * 179.72354 * 9 7 5 11 11 C 1.38427 * 122.53818 * 269.73237 * 10 9 7 12 12 C 1.33389 * 114.91812 * 179.76143 * 11 10 9 13 13 S 1.75882 * 109.59419 * 0.48252 * 12 11 10 14 14 C 1.33381 * 122.53992 * 90.02437 * 10 9 7 15 15 N 1.46894 * 109.47244 * 120.00339 * 2 1 3 16 16 C 1.46904 * 111.00248 * 274.99636 * 15 2 1 17 17 C 1.50692 * 109.47404 * 180.02562 * 16 15 2 18 18 O 1.21294 * 120.00323 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99928 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00161 * 179.97438 * 19 17 16 21 21 H 1.08005 * 119.99930 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00536 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99605 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00433 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47030 * 59.99870 * 24 22 20 26 26 H 1.48502 * 109.47446 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.47006 * 300.00218 * 24 22 20 28 28 H 1.09004 * 109.47261 * 299.99478 * 1 2 3 29 29 H 1.08996 * 109.47538 * 59.99447 * 1 2 3 30 30 H 1.09006 * 109.47050 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46980 * 64.99557 * 4 2 1 32 32 H 1.09005 * 109.46685 * 304.99649 * 4 2 1 33 33 H 1.08998 * 109.46921 * 269.99744 * 6 5 4 34 34 H 1.08994 * 109.46996 * 30.00327 * 6 5 4 35 35 H 1.09001 * 109.46578 * 150.00190 * 6 5 4 36 36 H 1.09004 * 109.46965 * 299.72211 * 9 7 5 37 37 H 1.08994 * 109.46990 * 59.72065 * 9 7 5 38 38 H 1.08009 * 122.53450 * 0.02562 * 11 10 9 39 39 H 1.08004 * 125.19955 * 180.20461 * 12 11 10 40 40 H 1.08008 * 125.20543 * 0.02562 * 14 10 9 41 41 H 1.00905 * 111.00102 * 151.04667 * 15 2 1 42 42 H 1.08998 * 109.47023 * 300.00744 * 16 15 2 43 43 H 1.09002 * 109.46617 * 60.00243 * 16 15 2 44 44 H 0.96993 * 120.00302 * 359.97438 * 19 17 16 45 45 H 0.96999 * 120.00279 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8262 -1.1907 6 6 4.3342 0.2343 -1.7614 7 6 4.0757 -1.8986 -0.6118 8 8 3.3851 -2.7763 -0.1390 9 6 5.5777 -2.0037 -0.5459 10 6 5.9615 -3.2836 0.1509 11 6 6.1504 -3.3581 1.5202 12 6 6.4824 -4.5667 1.9767 13 16 6.5850 -5.6970 0.6332 14 6 6.1505 -4.4291 -0.5057 15 7 2.0196 -0.6925 1.1993 16 6 2.0825 0.2225 2.3469 17 6 2.5886 -0.5216 3.5556 18 8 2.8698 -1.6984 3.4696 19 7 2.7288 0.1204 4.7323 20 6 3.1887 -0.5567 5.8322 21 1 3.4391 -1.6045 5.7555 22 6 3.3338 0.1053 7.0451 23 7 3.0297 1.3803 7.1382 24 14 3.9611 -0.8171 8.5435 25 1 5.3173 -1.3531 8.2628 26 1 4.0253 0.1081 9.7033 27 1 3.0400 -1.9395 8.8552 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7515 -0.1581 -2.1370 32 1 1.6054 -1.7197 -1.2953 33 1 4.5423 0.0095 -2.8074 34 1 3.8089 1.1868 -1.6919 35 1 5.2721 0.2955 -1.2093 36 1 5.9865 -2.0033 -1.5564 37 1 5.9773 -1.1544 0.0080 38 1 6.0335 -2.5034 2.1701 39 1 6.6651 -4.8123 3.0125 40 1 6.0523 -4.5583 -1.5735 41 1 2.9173 -1.1205 1.0286 42 1 2.7588 1.0461 2.1182 43 1 1.0871 0.6162 2.5526 44 1 2.5044 1.0615 4.8010 45 1 3.1313 1.8427 7.9849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734313199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:41 Heat of formation + Delta-G solvation = -24.566604 kcal Electronic energy + Delta-G solvation = -27879.963668 eV Core-core repulsion = 24024.741466 eV Total energy + Delta-G solvation = -3855.222202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.35992 -38.30129 -37.79335 -36.40727 -34.92553 -33.79533 -31.55394 -31.12420 -30.60064 -28.29612 -27.44173 -26.29842 -25.60222 -23.90160 -22.98587 -20.55736 -19.58306 -19.10502 -18.45858 -17.82686 -17.49710 -17.09999 -16.54264 -16.26866 -15.46971 -15.20523 -14.93589 -14.62505 -14.38825 -13.81456 -13.65875 -13.54371 -13.35247 -12.94659 -12.79895 -12.70100 -12.62517 -12.44252 -12.34386 -12.15552 -11.88165 -11.78662 -11.70669 -11.52910 -11.44481 -11.28134 -11.03807 -10.80704 -10.66412 -10.40386 -10.15495 -9.73578 -9.42990 -8.73525 -8.61185 -8.29775 -8.22911 -7.90932 -7.84287 -6.35676 -3.75845 1.17297 1.82057 2.12102 2.66527 2.70786 3.11952 3.23592 3.28477 3.33418 4.00041 4.16786 4.40249 4.60280 4.81926 4.87231 4.90406 4.94448 5.11456 5.15741 5.24304 5.30475 5.31947 5.35336 5.37379 5.46660 5.51194 5.60551 5.80133 5.82018 5.82310 5.87843 6.07517 6.09839 6.26188 6.28289 6.38403 6.49706 6.53553 6.62345 7.25347 7.43331 7.60689 7.90667 8.13591 8.24272 8.69724 9.25087 9.62128 10.15301 10.82396 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008044 B = 0.004167 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.948609 B = 6717.939627 C = 9488.532189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.067 3.933 3 H 0.038 0.962 4 C 0.114 3.886 5 N -0.629 5.629 6 C 0.077 3.923 7 C 0.504 3.496 8 O -0.491 6.491 9 C -0.079 4.079 10 C -0.079 4.079 11 C -0.113 4.113 12 C -0.202 4.202 13 S 0.079 5.921 14 C -0.205 4.205 15 N -0.658 5.658 16 C 0.049 3.951 17 C 0.441 3.559 18 O -0.571 6.571 19 N -0.568 5.568 20 C -0.296 4.296 21 H 0.101 0.899 22 C 0.021 3.979 23 N -0.905 5.905 24 Si 0.929 3.071 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.143 0.857 39 H 0.164 0.836 40 H 0.158 0.842 41 H 0.354 0.646 42 H 0.035 0.965 43 H 0.083 0.917 44 H 0.391 0.609 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.311 -0.819 -20.597 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.045 4.045 3 H 0.056 0.944 4 C -0.009 4.009 5 N -0.366 5.366 6 C -0.067 4.067 7 C 0.291 3.709 8 O -0.363 6.363 9 C -0.122 4.122 10 C -0.093 4.093 11 C -0.142 4.142 12 C -0.337 4.337 13 S 0.342 5.658 14 C -0.340 4.340 15 N -0.296 5.296 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.454 6.454 19 N -0.205 5.205 20 C -0.425 4.425 21 H 0.119 0.881 22 C -0.180 4.180 23 N -0.547 5.547 24 Si 0.756 3.244 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.161 0.839 39 H 0.182 0.818 40 H 0.176 0.824 41 H 0.179 0.821 42 H 0.053 0.947 43 H 0.101 0.899 44 H 0.224 0.776 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.911 -3.828 -20.174 21.113 hybrid contribution 0.470 2.520 0.841 2.698 sum 5.381 -1.308 -19.333 20.110 Atomic orbital electron populations 1.21745 0.94158 1.02675 1.01057 1.21924 0.96332 0.95623 0.90621 0.94373 1.21723 0.79156 1.02930 0.97118 1.47969 1.06883 1.21688 1.60029 1.21818 0.95680 0.90743 0.98442 1.20664 0.90568 0.81690 0.77957 1.90860 1.64207 1.38215 1.42995 1.20395 0.92873 0.96822 1.02072 1.18287 1.02799 0.94625 0.93549 1.20108 1.00762 0.98790 0.94548 1.25519 1.09751 0.96130 1.02345 1.84030 1.69206 1.14209 0.98333 1.25261 1.10163 0.95736 1.02873 1.60187 1.36245 1.31046 1.02157 1.21732 1.00861 0.93855 0.91891 1.19863 0.84815 0.88315 0.84420 1.90572 1.54432 1.15837 1.84591 1.41855 1.58346 1.12356 1.07954 1.19639 1.39682 0.96352 0.86854 0.88089 1.25221 0.97871 0.95762 0.99109 1.69607 1.49060 1.08848 1.27136 0.85951 0.79392 0.78868 0.80199 1.20000 1.21020 1.19922 0.92337 0.92939 0.91679 0.90141 0.88923 0.92495 0.91029 0.90895 0.88258 0.87966 0.83927 0.81813 0.82398 0.82124 0.94669 0.89886 0.77625 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.41 37.16 0.35 -1.32 16 2 C 0.07 0.89 2.95 -67.72 -0.20 0.69 16 3 H 0.04 0.47 7.80 -51.93 -0.40 0.07 16 4 C 0.11 1.30 5.20 -4.04 -0.02 1.28 16 5 N -0.63 -7.01 2.66 -181.57 -0.48 -7.49 16 6 C 0.08 0.53 10.25 59.85 0.61 1.14 16 7 C 0.50 7.10 6.04 -10.98 -0.07 7.04 16 8 O -0.49 -9.36 14.20 5.55 0.08 -9.28 16 9 C -0.08 -0.89 4.51 -29.03 -0.13 -1.02 16 10 C -0.08 -1.10 4.29 -106.25 -0.46 -1.56 16 11 C -0.11 -1.78 9.98 -41.21 -0.41 -2.19 16 12 C -0.20 -2.99 11.23 29.04 0.33 -2.66 16 13 S 0.08 1.01 23.34 -107.50 -2.51 -1.50 16 14 C -0.20 -2.60 10.98 29.03 0.32 -2.28 16 15 N -0.66 -12.16 5.82 -108.00 -0.63 -12.79 16 16 C 0.05 0.96 5.97 -4.98 -0.03 0.93 16 17 C 0.44 11.03 7.82 -10.99 -0.09 10.94 16 18 O -0.57 -16.47 15.78 5.54 0.09 -16.39 16 19 N -0.57 -14.89 5.29 -10.96 -0.06 -14.95 16 20 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 21 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -25.05 13.05 55.50 0.72 -24.33 16 24 Si 0.93 21.53 29.55 -169.99 -5.02 16.50 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 28 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 32 H 0.09 1.26 7.42 -51.93 -0.39 0.87 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 35 H 0.07 0.45 6.43 -51.93 -0.33 0.11 16 36 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.10 1.02 7.38 -51.93 -0.38 0.64 16 38 H 0.14 2.41 8.06 -52.48 -0.42 1.99 16 39 H 0.16 2.20 8.06 -52.48 -0.42 1.78 16 40 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 41 H 0.35 7.00 4.17 -39.29 -0.16 6.84 16 42 H 0.04 0.62 8.05 -51.93 -0.42 0.20 16 43 H 0.08 1.50 7.44 -51.93 -0.39 1.11 16 44 H 0.39 9.81 7.90 -40.82 -0.32 9.48 16 45 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 387.15 15.07 5.83 5.83 Total: -1.00 -35.82 387.15 -8.50 -44.32 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -6.49 Total: 17.19 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -0.03 Total: 2.87 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.45 Total: -59.56 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: 0.17 Total: -25.67 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.51 Total: -1.50 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.82 -8.50 -44.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734313199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.754 kcal (2) G-P(sol) polarization free energy of solvation -35.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds