Wall clock time and date at job start Sat Apr 11 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46924 * 2 1 4 4 C 1.53002 * 109.47101 * 120.00444 * 2 1 3 5 5 N 1.46506 * 109.46593 * 176.69830 * 4 2 1 6 6 C 1.46508 * 119.99572 * 83.70066 * 5 4 2 7 7 C 1.34769 * 120.00327 * 263.69739 * 5 4 2 8 8 O 1.21284 * 119.99985 * 359.97438 * 7 5 4 9 9 C 1.50694 * 120.00011 * 180.02562 * 7 5 4 10 10 C 1.50704 * 109.47225 * 179.97438 * 9 7 5 11 11 C 1.38420 * 122.53935 * 270.00493 * 10 9 7 12 12 C 1.33400 * 114.91908 * 180.02562 * 11 10 9 13 13 S 1.75883 * 109.59296 * 359.97438 * 12 11 10 14 14 C 1.33387 * 122.54044 * 90.02116 * 10 9 7 15 15 N 1.46907 * 109.46746 * 240.00290 * 2 1 3 16 16 C 1.46898 * 110.99874 * 78.69077 * 15 2 1 17 17 C 1.50702 * 109.46717 * 179.97438 * 16 15 2 18 18 O 1.21288 * 120.00451 * 0.02562 * 17 16 15 19 19 N 1.34782 * 119.99466 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99582 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00051 * 0.02562 * 20 19 17 22 22 C 1.38947 * 119.99799 * 180.02562 * 20 19 17 23 23 N 1.31418 * 120.00005 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00047 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47220 * 90.00331 * 24 22 20 26 26 H 1.48499 * 109.47062 * 210.00486 * 24 22 20 27 27 H 1.48501 * 109.46808 * 330.00283 * 24 22 20 28 28 H 1.08996 * 109.47260 * 59.99528 * 1 2 3 29 29 H 1.09007 * 109.46872 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46727 * 299.99557 * 1 2 3 31 31 H 1.08994 * 109.47028 * 56.70512 * 4 2 1 32 32 H 1.08996 * 109.46733 * 296.69745 * 4 2 1 33 33 H 1.09001 * 109.46803 * 265.09576 * 6 5 4 34 34 H 1.09002 * 109.47159 * 25.09742 * 6 5 4 35 35 H 1.08996 * 109.46905 * 145.09879 * 6 5 4 36 36 H 1.08997 * 109.47368 * 60.00140 * 9 7 5 37 37 H 1.08995 * 109.47286 * 299.99604 * 9 7 5 38 38 H 1.08002 * 122.54406 * 0.03753 * 11 10 9 39 39 H 1.08005 * 125.20124 * 180.02562 * 12 11 10 40 40 H 1.08004 * 125.19772 * 359.71772 * 14 10 9 41 41 H 1.00901 * 110.99596 * 202.64343 * 15 2 1 42 42 H 1.08997 * 109.47120 * 300.00009 * 16 15 2 43 43 H 1.09002 * 109.47401 * 60.00068 * 16 15 2 44 44 H 0.96996 * 120.00316 * 0.02562 * 19 17 16 45 45 H 0.97000 * 119.99626 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5029 -0.7906 1.2100 6 6 4.3027 0.3446 1.6771 7 6 4.1130 -1.8984 0.7442 8 8 3.4509 -2.8383 0.3580 9 6 5.6177 -1.9697 0.7044 10 6 6.0428 -3.3035 0.1465 11 6 6.2600 -4.4109 0.9481 12 6 6.6324 -5.5130 0.2953 13 16 6.7246 -5.1748 -1.4283 14 6 6.2386 -3.5064 -1.1573 15 7 2.0196 -0.6925 -1.1996 16 6 1.9415 0.1792 -2.3794 17 6 2.4516 -0.5636 -3.5873 18 8 2.8414 -1.7067 -3.4764 19 7 2.4737 0.0422 -4.7911 20 6 2.9382 -0.6333 -5.8900 21 1 3.2861 -1.6509 -5.7910 22 6 2.9615 -0.0087 -7.1309 23 7 2.5387 1.2298 -7.2512 24 14 3.5938 -0.9293 -8.6283 25 1 2.4672 -1.6402 -9.2845 26 1 4.1950 0.0346 -9.5846 27 1 4.6219 -1.9142 -8.2061 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6293 -1.7305 1.2791 32 1 1.7258 -0.1745 2.1382 33 1 4.5679 0.9757 0.8289 34 1 3.7242 0.9255 2.3955 35 1 5.2110 -0.0229 2.1545 36 1 6.0137 -1.8556 1.7135 37 1 6.0027 -1.1710 0.0706 38 1 6.1370 -4.3847 2.0208 39 1 6.8440 -6.4673 0.7548 40 1 6.1132 -2.7612 -1.9290 41 1 2.9598 -1.0321 -1.0625 42 1 0.9055 0.4747 -2.5448 43 1 2.5511 1.0679 -2.2156 44 1 2.1616 0.9563 -4.8799 45 1 2.5553 1.6659 -8.1174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734313200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:43 Heat of formation + Delta-G solvation = -28.057657 kcal Electronic energy + Delta-G solvation = -27620.647828 eV Core-core repulsion = 23765.274242 eV Total energy + Delta-G solvation = -3855.373586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.26605 -38.35075 -37.82487 -36.48132 -34.88808 -33.81451 -31.58626 -31.14803 -30.59156 -28.30363 -27.43214 -26.36145 -25.59690 -23.93717 -23.05230 -20.53714 -19.56899 -19.14190 -18.49245 -17.84140 -17.52245 -17.09346 -16.54140 -16.09319 -15.64088 -15.21982 -15.07671 -14.54438 -14.40000 -13.82466 -13.68367 -13.58647 -13.30696 -12.98784 -12.83748 -12.69940 -12.68108 -12.45743 -12.35726 -12.16657 -11.89395 -11.82823 -11.72540 -11.57723 -11.44286 -11.32868 -11.06157 -10.80269 -10.64431 -10.36102 -10.17156 -9.72065 -9.45402 -8.73809 -8.65750 -8.32827 -8.26578 -7.93610 -7.87618 -6.37024 -3.77299 1.15200 1.80671 2.12822 2.61794 2.72439 3.09662 3.21070 3.29085 3.35265 3.97879 4.15120 4.37643 4.61336 4.81045 4.84187 4.91394 4.98044 5.11350 5.13283 5.24438 5.29506 5.35023 5.37392 5.39522 5.41045 5.47766 5.51766 5.73514 5.76872 5.83195 5.86008 6.06015 6.08162 6.09543 6.27335 6.37542 6.47397 6.49655 6.52832 7.27903 7.39598 7.59789 7.83553 8.12244 8.26277 8.67880 9.23647 9.60404 10.13140 10.81005 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008177 B = 0.003930 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.322366 B = 7123.414435 C = 9898.553649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.067 3.933 3 H 0.036 0.964 4 C 0.115 3.885 5 N -0.628 5.628 6 C 0.077 3.923 7 C 0.507 3.493 8 O -0.496 6.496 9 C -0.077 4.077 10 C -0.097 4.097 11 C -0.119 4.119 12 C -0.224 4.224 13 S 0.103 5.897 14 C -0.179 4.179 15 N -0.655 5.655 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.575 6.575 19 N -0.567 5.567 20 C -0.296 4.296 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.904 5.904 24 Si 0.928 3.072 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.134 0.866 39 H 0.160 0.840 40 H 0.166 0.834 41 H 0.350 0.650 42 H 0.085 0.915 43 H 0.037 0.963 44 H 0.391 0.609 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.044 -0.507 21.152 22.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.044 4.044 3 H 0.054 0.946 4 C -0.008 4.008 5 N -0.364 5.364 6 C -0.066 4.066 7 C 0.294 3.706 8 O -0.369 6.369 9 C -0.119 4.119 10 C -0.109 4.109 11 C -0.150 4.150 12 C -0.359 4.359 13 S 0.367 5.633 14 C -0.315 4.315 15 N -0.291 5.291 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.458 6.458 19 N -0.204 5.204 20 C -0.426 4.426 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.546 5.546 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.152 0.848 39 H 0.178 0.822 40 H 0.184 0.816 41 H 0.172 0.828 42 H 0.103 0.897 43 H 0.055 0.945 44 H 0.224 0.776 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.752 -2.905 19.426 20.467 hybrid contribution 0.339 1.912 0.445 1.992 sum 6.091 -0.993 19.870 20.807 Atomic orbital electron populations 1.21755 0.94089 1.02765 1.01172 1.21906 0.96269 0.95453 0.90812 0.94565 1.21704 0.79038 1.03229 0.96803 1.47931 1.06842 1.16395 1.65263 1.21804 0.96105 0.88991 0.99693 1.20627 0.90307 0.82224 0.77467 1.90829 1.66215 1.35797 1.44022 1.20360 0.92664 0.95996 1.02914 1.18238 1.04237 0.95677 0.92749 1.19906 1.02363 0.92020 1.00697 1.25488 1.10858 1.02769 0.96779 1.84301 1.66797 1.06075 1.06126 1.25554 1.06639 0.99702 0.99607 1.60103 1.31318 1.36922 1.00772 1.21727 1.01359 0.93929 0.91306 1.19858 0.85106 0.88134 0.84299 1.90558 1.51960 1.18111 1.85157 1.41863 1.56794 1.15367 1.06382 1.19693 1.38349 0.99116 0.85417 0.88020 1.25233 0.97720 0.95923 0.99090 1.69618 1.47562 1.11684 1.25711 0.85882 0.79061 0.78877 0.80626 1.20403 1.20979 1.19456 0.92312 0.91595 0.92813 0.88577 0.90393 0.92658 0.90856 0.91091 0.88261 0.88156 0.84827 0.82198 0.81600 0.82797 0.89712 0.94542 0.77590 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.34 37.16 0.35 -1.32 16 2 C 0.07 0.88 2.92 -67.71 -0.20 0.69 16 3 H 0.04 0.44 7.91 -51.93 -0.41 0.03 16 4 C 0.12 1.32 5.22 -4.04 -0.02 1.29 16 5 N -0.63 -6.95 2.52 -181.57 -0.46 -7.41 16 6 C 0.08 0.54 10.19 59.85 0.61 1.15 16 7 C 0.51 7.05 6.10 -10.99 -0.07 6.98 16 8 O -0.50 -9.34 14.83 5.55 0.08 -9.26 16 9 C -0.08 -0.85 4.57 -29.04 -0.13 -0.98 16 10 C -0.10 -1.30 4.29 -106.25 -0.46 -1.75 16 11 C -0.12 -1.45 9.98 -41.21 -0.41 -1.87 16 12 C -0.22 -2.67 11.23 29.04 0.33 -2.34 16 13 S 0.10 1.40 23.34 -107.50 -2.51 -1.11 16 14 C -0.18 -2.69 10.98 29.04 0.32 -2.38 16 15 N -0.66 -11.92 5.91 -107.98 -0.64 -12.56 16 16 C 0.05 0.95 5.97 -4.98 -0.03 0.92 16 17 C 0.44 10.99 7.82 -10.98 -0.09 10.90 16 18 O -0.57 -16.53 15.78 5.55 0.09 -16.44 16 19 N -0.57 -14.86 5.29 -10.96 -0.06 -14.91 16 20 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 21 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -25.04 13.05 55.50 0.72 -24.32 16 24 Si 0.93 21.55 29.55 -169.99 -5.02 16.53 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.06 0.74 7.08 -51.93 -0.37 0.37 16 29 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.10 1.33 7.24 -51.93 -0.38 0.95 16 32 H 0.08 0.64 7.96 -51.93 -0.41 0.22 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.38 7.91 -51.93 -0.41 -0.03 16 35 H 0.07 0.36 6.64 -51.93 -0.34 0.01 16 36 H 0.10 0.76 7.40 -51.93 -0.38 0.37 16 37 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 38 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 39 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 40 H 0.17 2.63 8.06 -52.48 -0.42 2.20 16 41 H 0.35 6.86 5.18 -39.29 -0.20 6.66 16 42 H 0.08 1.51 7.04 -51.93 -0.37 1.14 16 43 H 0.04 0.63 8.07 -51.93 -0.42 0.21 16 44 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 45 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 387.87 15.07 5.85 5.85 Total: -1.00 -35.82 387.87 -8.47 -44.29 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -6.49 Total: 16.19 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.04 Total: 3.16 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.43 Total: -59.20 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: 0.17 Total: -25.70 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.51 Total: -1.11 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.82 -8.47 -44.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734313200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.232 kcal (2) G-P(sol) polarization free energy of solvation -35.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds