Wall clock time and date at job start Sat Apr 11 2020 05:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08989 * 109.47319 * 2 1 4 4 C 1.53002 * 109.47149 * 239.99772 * 2 1 3 5 5 N 1.46497 * 109.47196 * 185.00641 * 4 2 1 6 6 C 1.46507 * 119.99285 * 269.99687 * 5 4 2 7 7 C 1.34768 * 120.00208 * 90.00224 * 5 4 2 8 8 O 1.21284 * 120.00291 * 3.86639 * 7 5 4 9 9 C 1.50703 * 120.00099 * 183.87093 * 7 5 4 10 10 H 1.09004 * 109.47063 * 313.98940 * 9 7 5 11 11 C 1.53003 * 109.47251 * 73.98537 * 9 7 5 12 12 N 1.46494 * 109.47241 * 193.98887 * 9 7 5 13 13 C 1.34784 * 120.00052 * 155.27405 * 12 9 7 14 14 O 1.21701 * 119.99521 * 359.72724 * 13 12 9 15 15 C 1.46574 * 120.00267 * 179.72118 * 13 12 9 16 16 C 1.36651 * 125.46210 * 179.97438 * 15 13 12 17 17 C 1.37472 * 113.29769 * 180.02562 * 16 15 13 18 18 C 1.33812 * 115.10346 * 0.02562 * 17 16 15 19 19 S 1.70616 * 110.95388 * 359.71840 * 18 17 16 20 20 N 1.46498 * 109.46811 * 120.00247 * 2 1 3 21 21 C 1.36938 * 119.99719 * 274.99717 * 20 2 1 22 22 H 1.07996 * 120.00288 * 359.97438 * 21 20 2 23 23 C 1.38815 * 119.99750 * 180.02562 * 21 20 2 24 24 N 1.31621 * 120.00417 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99881 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47054 * 89.99574 * 25 23 21 27 27 H 1.48498 * 109.47072 * 209.99791 * 25 23 21 28 28 H 1.48503 * 109.46740 * 329.99825 * 25 23 21 29 29 H 1.08996 * 109.47174 * 300.00036 * 1 2 3 30 30 H 1.09006 * 109.46872 * 60.00203 * 1 2 3 31 31 H 1.09002 * 109.47637 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47002 * 64.99754 * 4 2 1 33 33 H 1.09009 * 109.46961 * 305.00865 * 4 2 1 34 34 H 1.08991 * 109.47227 * 264.65244 * 6 5 4 35 35 H 1.08993 * 109.47384 * 24.65694 * 6 5 4 36 36 H 1.09009 * 109.46521 * 144.65719 * 6 5 4 37 37 H 1.08997 * 109.46996 * 176.10485 * 11 9 7 38 38 H 1.09005 * 109.47316 * 296.10851 * 11 9 7 39 39 H 1.09001 * 109.46999 * 56.10697 * 11 9 7 40 40 H 0.96997 * 120.00292 * 334.99628 * 12 9 7 41 41 H 1.08001 * 123.34688 * 359.97438 * 16 15 13 42 42 H 1.07999 * 122.44862 * 180.02562 * 17 16 15 43 43 H 1.07995 * 124.52541 * 180.02562 * 18 17 16 44 44 H 0.97003 * 120.00506 * 95.00092 * 20 2 1 45 45 H 0.96994 * 119.99725 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8266 -1.1905 6 6 4.3343 0.2339 -1.7613 7 6 4.0756 -1.8989 -0.6115 8 8 3.3872 -2.8095 -0.2019 9 6 5.5747 -1.9664 -0.4730 10 1 6.0401 -1.6767 -1.4152 11 6 6.0281 -1.0127 0.6342 12 7 5.9725 -3.3345 -0.1322 13 6 7.2114 -3.7711 -0.4340 14 8 7.9979 -3.0303 -0.9941 15 6 7.6115 -5.1380 -0.0875 16 6 8.8337 -5.6945 -0.3403 17 6 8.9385 -6.9955 0.0914 18 6 7.8414 -7.4894 0.6771 19 16 6.5976 -6.3226 0.7253 20 7 2.0183 -0.6907 1.1961 21 6 2.1490 -0.0075 2.3757 22 1 1.8927 1.0405 2.4241 23 6 2.6122 -0.6618 3.5090 24 7 2.9252 -1.9389 3.4500 25 14 2.7899 0.2699 5.1183 26 1 1.5222 0.1777 5.8862 27 1 3.8949 -0.3228 5.9140 28 1 3.0939 1.6954 4.8339 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -0.1584 -2.1369 33 1 1.6052 -1.7199 -1.2952 34 1 4.6211 -0.0367 -2.7774 35 1 3.7730 1.1680 -1.7788 36 1 5.2296 0.3592 -1.1522 37 1 7.1035 -1.1122 0.7816 38 1 5.7939 0.0130 0.3487 39 1 5.5099 -1.2593 1.5609 40 1 5.3456 -3.9249 0.3143 41 1 9.6370 -5.1652 -0.8312 42 1 9.8404 -7.5764 -0.0331 43 1 7.7564 -8.4912 1.0714 44 1 2.2490 -1.6319 1.1526 45 1 3.2484 -2.3961 4.2420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734336311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:46 Heat of formation + Delta-G solvation = -15.489970 kcal Electronic energy + Delta-G solvation = -28155.846488 eV Core-core repulsion = 24301.017878 eV Total energy + Delta-G solvation = -3854.828610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.25789 -39.15634 -37.52301 -36.14382 -34.75479 -34.34754 -32.06962 -31.03456 -29.35429 -28.58545 -27.00061 -25.90013 -25.18826 -23.70625 -23.24925 -21.21110 -20.02296 -19.58996 -18.94702 -18.55510 -17.17993 -16.51686 -16.45645 -15.69374 -15.45772 -15.23562 -14.92675 -14.78075 -14.41147 -13.75529 -13.73286 -13.50069 -13.11590 -13.01129 -12.85704 -12.75938 -12.48912 -12.36318 -12.22914 -12.04430 -11.94396 -11.60465 -11.40367 -11.29430 -11.08079 -10.97836 -10.82258 -10.65348 -10.38078 -10.04463 -10.01268 -9.57035 -9.38070 -9.08805 -8.87119 -8.84025 -8.67771 -8.15461 -6.84337 -5.65392 -2.94471 0.43943 1.40972 1.82764 2.31105 2.97877 3.04844 3.23186 3.44998 3.50574 3.52022 3.62807 4.63719 4.71332 4.81424 4.91202 5.18464 5.27456 5.33076 5.35197 5.43152 5.43893 5.50066 5.61563 5.74938 5.79231 5.82143 5.98021 6.01352 6.04460 6.06056 6.15792 6.20386 6.26875 6.37489 6.48333 6.64732 6.73422 6.79502 6.91756 7.12471 7.58314 7.73099 7.76414 8.21388 8.50698 8.61910 9.64236 10.25769 10.64252 11.54879 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011380 B = 0.003757 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.862251 B = 7450.432480 C = 8626.865174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.044 0.956 4 C 0.109 3.891 5 N -0.602 5.602 6 C 0.071 3.929 7 C 0.524 3.476 8 O -0.518 6.518 9 C 0.134 3.866 10 H 0.103 0.897 11 C -0.160 4.160 12 N -0.702 5.702 13 C 0.593 3.407 14 O -0.538 6.538 15 C -0.265 4.265 16 C -0.060 4.060 17 C -0.153 4.153 18 C -0.238 4.238 19 S 0.227 5.773 20 N -0.720 5.720 21 C -0.237 4.237 22 H 0.064 0.936 23 C -0.010 4.010 24 N -0.921 5.921 25 Si 0.897 3.103 26 H -0.292 1.292 27 H -0.293 1.293 28 H -0.284 1.284 29 H 0.055 0.945 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.412 0.588 41 H 0.152 0.848 42 H 0.143 0.857 43 H 0.168 0.832 44 H 0.396 0.604 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.397 -5.565 -11.375 15.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.043 3.957 3 H 0.062 0.938 4 C -0.014 4.014 5 N -0.335 5.335 6 C -0.072 4.072 7 C 0.311 3.689 8 O -0.392 6.392 9 C 0.026 3.974 10 H 0.121 0.879 11 C -0.218 4.218 12 N -0.355 5.355 13 C 0.380 3.620 14 O -0.417 6.417 15 C -0.386 4.386 16 C -0.094 4.094 17 C -0.185 4.185 18 C -0.376 4.376 19 S 0.495 5.505 20 N -0.366 5.366 21 C -0.369 4.369 22 H 0.082 0.918 23 C -0.206 4.206 24 N -0.569 5.569 25 Si 0.728 3.272 26 H -0.220 1.220 27 H -0.219 1.219 28 H -0.210 1.210 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.250 0.750 41 H 0.170 0.830 42 H 0.161 0.839 43 H 0.185 0.815 44 H 0.234 0.766 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.084 -5.429 -10.850 14.050 hybrid contribution 1.305 -0.048 0.801 1.532 sum 8.389 -5.476 -10.050 14.190 Atomic orbital electron populations 1.22408 0.99084 1.00986 0.99953 1.20645 0.92019 0.95595 0.87491 0.93800 1.21884 0.78894 1.02249 0.98347 1.47431 1.06856 1.20809 1.58452 1.21946 0.96189 0.91123 0.97940 1.20171 0.89482 0.82225 0.77043 1.90684 1.64056 1.37547 1.46958 1.20730 0.92658 0.83140 1.00858 0.87882 1.22161 1.01850 0.98312 0.99469 1.45664 1.14326 1.14577 1.60966 1.16882 0.81751 0.84936 0.78466 1.90794 1.51655 1.56228 1.43038 1.24663 1.00561 0.99464 1.13904 1.20756 0.96137 0.94222 0.98276 1.20007 0.99856 0.95688 1.02907 1.25413 0.99177 1.05523 1.07522 1.83567 1.13944 1.00961 1.52061 1.42650 1.77685 1.11572 1.04662 1.19179 1.36435 0.93617 0.87633 0.91767 1.24680 1.02548 0.95878 0.97536 1.69720 1.50601 1.08284 1.28250 0.86356 0.77237 0.78818 0.84757 1.21953 1.21941 1.21011 0.92631 0.94619 0.93380 0.90962 0.90141 0.92996 0.90762 0.90686 0.91715 0.90737 0.89559 0.75048 0.83001 0.83909 0.81463 0.76576 0.93822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.49 37.16 0.35 -2.56 16 2 C 0.15 2.99 3.20 -67.93 -0.22 2.78 16 3 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 4 C 0.11 1.79 5.12 -4.04 -0.02 1.77 16 5 N -0.60 -9.74 2.77 -181.57 -0.50 -10.25 16 6 C 0.07 0.86 9.86 59.85 0.59 1.45 16 7 C 0.52 9.78 6.16 -10.99 -0.07 9.71 16 8 O -0.52 -11.43 13.40 5.55 0.07 -11.36 16 9 C 0.13 2.25 2.15 -69.08 -0.15 2.10 16 10 H 0.10 1.57 6.91 -51.93 -0.36 1.21 16 11 C -0.16 -2.76 9.22 37.16 0.34 -2.42 16 12 N -0.70 -11.81 5.02 -56.27 -0.28 -12.09 16 13 C 0.59 9.70 7.74 -12.90 -0.10 9.60 16 14 O -0.54 -9.76 16.50 5.19 0.09 -9.67 16 15 C -0.27 -3.69 6.45 -36.80 -0.24 -3.93 16 16 C -0.06 -0.72 10.01 -40.43 -0.40 -1.13 16 17 C -0.15 -1.50 10.15 -41.41 -0.42 -1.92 16 18 C -0.24 -2.31 10.92 29.18 0.32 -1.99 16 19 S 0.23 2.71 22.16 -107.50 -2.38 0.33 16 20 N -0.72 -17.89 4.52 -53.43 -0.24 -18.13 16 21 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 22 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 24 N -0.92 -27.44 13.06 55.49 0.72 -26.72 16 25 Si 0.90 22.35 29.55 -169.99 -5.02 17.33 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.08 1.44 7.37 -51.92 -0.38 1.06 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.79 8.03 -51.93 -0.42 0.38 16 36 H 0.07 0.90 4.57 -51.92 -0.24 0.66 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.17 5.83 -51.93 -0.30 0.87 16 39 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 40 H 0.41 7.18 6.83 -40.82 -0.28 6.91 16 41 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.40 10.74 5.19 -40.82 -0.21 10.53 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 384.25 15.07 5.79 5.79 Total: -1.00 -33.53 384.25 -8.39 -41.93 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -6.38 Total: 16.40 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -0.26 Total: 6.45 kcal Atomic # 7 Polarization: -66.88 SS G_CDS: -0.30 Total: -67.19 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: 0.16 Total: -21.03 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.38 Total: 0.33 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.53 -8.39 -41.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734336311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.439 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds