Wall clock time and date at job start Sat Apr 11 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47524 * 2 1 4 4 C 1.52997 * 109.47137 * 120.00513 * 2 1 3 5 5 N 1.46500 * 109.47357 * 174.99779 * 4 2 1 6 6 C 1.46498 * 119.99963 * 270.00236 * 5 4 2 7 7 C 1.34777 * 120.00084 * 89.99432 * 5 4 2 8 8 O 1.21283 * 119.99665 * 0.02562 * 7 5 4 9 9 C 1.50697 * 120.00075 * 180.02562 * 7 5 4 10 10 H 1.08998 * 109.46862 * 60.01098 * 9 7 5 11 11 C 1.52997 * 109.47466 * 300.00543 * 9 7 5 12 12 N 1.46506 * 109.47015 * 180.02562 * 9 7 5 13 13 C 1.34777 * 120.00033 * 205.00057 * 12 9 7 14 14 O 1.21709 * 119.99899 * 0.02562 * 13 12 9 15 15 C 1.46576 * 120.00011 * 180.02562 * 13 12 9 16 16 C 1.36654 * 125.45951 * 180.02562 * 15 13 12 17 17 C 1.37467 * 113.29820 * 179.97438 * 16 15 13 18 18 C 1.33815 * 115.10412 * 0.02562 * 17 16 15 19 19 S 1.70621 * 110.95214 * 359.76001 * 18 17 16 20 20 N 1.46499 * 109.46768 * 240.00482 * 2 1 3 21 21 C 1.36938 * 120.00370 * 85.00551 * 20 2 1 22 22 H 1.08004 * 119.99830 * 359.97438 * 21 20 2 23 23 C 1.38808 * 120.00363 * 180.02562 * 21 20 2 24 24 N 1.31617 * 120.00226 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99882 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46901 * 90.00416 * 25 23 21 27 27 H 1.48499 * 109.47269 * 210.00560 * 25 23 21 28 28 H 1.48496 * 109.47041 * 330.00575 * 25 23 21 29 29 H 1.08999 * 109.47227 * 59.99335 * 1 2 3 30 30 H 1.08996 * 109.47524 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46898 * 299.99664 * 1 2 3 32 32 H 1.08995 * 109.47374 * 54.99888 * 4 2 1 33 33 H 1.08999 * 109.47317 * 294.99729 * 4 2 1 34 34 H 1.09001 * 109.47076 * 269.99498 * 6 5 4 35 35 H 1.08996 * 109.47427 * 29.99981 * 6 5 4 36 36 H 1.08999 * 109.47290 * 149.99686 * 6 5 4 37 37 H 1.09002 * 109.47153 * 59.99773 * 11 9 7 38 38 H 1.09001 * 109.46832 * 299.99964 * 11 9 7 39 39 H 1.09004 * 109.47261 * 179.97438 * 11 9 7 40 40 H 0.96992 * 120.00062 * 25.00511 * 12 9 7 41 41 H 1.08001 * 123.34780 * 359.93848 * 16 15 13 42 42 H 1.07999 * 122.45122 * 180.02562 * 17 16 15 43 43 H 1.07996 * 124.52995 * 180.02562 * 18 17 16 44 44 H 0.97003 * 119.99715 * 264.99524 * 20 2 1 45 45 H 0.97003 * 120.00221 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.1257 -1.9921 0.5610 7 6 4.2676 0.1490 1.7155 8 8 3.7495 1.1137 2.2369 9 6 5.7695 0.0411 1.6546 10 1 6.0879 -0.0129 0.6136 11 6 6.2204 -1.2213 2.3921 12 7 6.3697 1.2174 2.2890 13 6 7.6100 1.6123 1.9395 14 8 8.2313 0.9919 1.0966 15 6 8.2108 2.7888 2.5745 16 6 9.4549 3.2862 2.3059 17 6 9.7663 4.4014 3.0470 18 6 8.8121 4.8047 3.8940 19 16 7.4436 3.7902 3.7995 20 7 2.0182 -0.6905 -1.1962 21 6 2.1491 -0.0073 -2.3758 22 1 1.8920 1.0405 -2.4243 23 6 2.6112 -0.6617 -3.5094 24 7 2.7365 -0.0052 -4.6432 25 14 3.0553 -2.4743 -3.4256 26 1 1.8578 -3.2925 -3.7446 27 1 4.1303 -2.7665 -4.4076 28 1 3.5307 -2.8048 -2.0582 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -1.7199 1.2950 33 1 1.7517 -0.1585 2.1369 34 1 4.2822 -2.7690 1.3094 35 1 3.4757 -2.3722 -0.2270 36 1 5.0850 -1.7022 0.1322 37 1 5.7738 -2.0967 1.9205 38 1 5.9019 -1.1672 3.4331 39 1 7.3067 -1.2996 2.3477 40 1 5.8745 1.7120 2.9605 41 1 10.1269 2.8465 1.5838 42 1 10.7119 4.9145 2.9525 43 1 8.8952 5.6609 4.5470 44 1 2.2490 -1.6317 -1.1527 45 1 3.0598 -0.4624 -5.4353 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734336313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:51 Heat of formation + Delta-G solvation = -6.592710 kcal Electronic energy + Delta-G solvation = -27642.732946 eV Core-core repulsion = 23788.290150 eV Total energy + Delta-G solvation = -3854.442796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.55771 -39.39473 -37.70841 -36.64730 -35.11679 -34.47642 -32.23518 -31.29141 -29.73547 -29.32837 -27.07192 -26.23311 -25.38618 -23.87200 -23.11107 -21.41258 -20.32800 -19.93901 -19.21088 -18.73716 -17.68729 -16.76845 -16.71535 -15.96859 -15.83119 -15.45806 -15.06467 -14.82361 -14.75617 -14.12811 -13.90250 -13.71476 -13.45418 -13.13053 -13.02856 -12.94011 -12.80029 -12.59677 -12.49336 -12.34255 -12.20239 -11.77444 -11.73417 -11.49444 -11.44622 -11.22852 -10.93907 -10.70136 -10.60748 -10.22662 -10.08450 -9.74524 -9.55178 -9.33996 -9.09370 -8.97661 -8.86414 -8.41625 -7.27787 -5.77006 -3.12727 0.25998 1.20928 1.61848 2.15354 2.65585 2.71546 3.07469 3.22957 3.33019 3.34008 3.41820 4.38112 4.54951 4.61229 4.72841 4.95506 5.02648 5.07378 5.14807 5.20774 5.24152 5.35756 5.46839 5.50139 5.59972 5.61804 5.65803 5.71543 5.88964 5.90254 5.94776 6.04597 6.07014 6.13443 6.16320 6.18237 6.43713 6.59701 6.76789 7.01304 7.30347 7.46212 7.99320 8.00143 8.21293 8.41087 9.18932 9.90579 10.10119 11.41608 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.003047 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.526487 B = 9187.300398 C = 9698.985620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.160 3.840 3 H 0.060 0.940 4 C 0.107 3.893 5 N -0.589 5.589 6 C 0.067 3.933 7 C 0.516 3.484 8 O -0.543 6.543 9 C 0.126 3.874 10 H 0.120 0.880 11 C -0.170 4.170 12 N -0.707 5.707 13 C 0.594 3.406 14 O -0.526 6.526 15 C -0.264 4.264 16 C -0.056 4.056 17 C -0.151 4.151 18 C -0.233 4.233 19 S 0.209 5.791 20 N -0.744 5.744 21 C -0.238 4.238 22 H 0.088 0.912 23 C 0.003 3.997 24 N -0.934 5.934 25 Si 0.881 3.119 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.274 1.274 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.406 0.594 41 H 0.155 0.845 42 H 0.146 0.854 43 H 0.169 0.831 44 H 0.357 0.643 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.038 2.079 21.431 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.050 3.950 3 H 0.078 0.922 4 C -0.016 4.016 5 N -0.320 5.320 6 C -0.076 4.076 7 C 0.303 3.697 8 O -0.421 6.421 9 C 0.018 3.982 10 H 0.138 0.862 11 C -0.229 4.229 12 N -0.360 5.360 13 C 0.380 3.620 14 O -0.404 6.404 15 C -0.384 4.384 16 C -0.089 4.089 17 C -0.182 4.182 18 C -0.371 4.371 19 S 0.476 5.524 20 N -0.389 5.389 21 C -0.368 4.368 22 H 0.106 0.894 23 C -0.193 4.193 24 N -0.582 5.582 25 Si 0.712 3.288 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.200 1.200 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.243 0.757 41 H 0.172 0.828 42 H 0.163 0.837 43 H 0.186 0.814 44 H 0.191 0.809 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.776 2.287 21.653 23.476 hybrid contribution 1.519 -0.888 -0.710 1.897 sum 10.295 1.399 20.944 23.379 Atomic orbital electron populations 1.22338 0.98197 1.00888 1.00871 1.20625 0.92233 0.96573 0.85617 0.92208 1.21944 0.78296 1.01417 0.99897 1.47476 1.06870 1.21048 1.56652 1.22297 0.99954 0.87497 0.97862 1.20338 0.88687 0.82485 0.78218 1.90658 1.74649 1.30975 1.45788 1.20784 0.90506 0.86348 1.00586 0.86211 1.22388 1.03179 0.96460 1.00838 1.45562 1.16218 1.30534 1.43669 1.16894 0.81023 0.82561 0.81529 1.90851 1.61831 1.55479 1.32244 1.24598 1.01104 1.04288 1.08438 1.20824 0.94601 0.94693 0.98798 1.20053 1.01438 0.98374 0.98321 1.25370 0.99182 1.06364 1.06153 1.83219 1.15879 1.18977 1.34287 1.42808 1.79822 1.09111 1.07153 1.19057 1.36705 0.95570 0.85456 0.89376 1.24672 1.01636 0.97374 0.95582 1.69695 1.52751 1.35465 1.00254 0.86688 0.78117 0.87019 0.76933 1.21288 1.21789 1.20048 0.92037 0.93546 0.93956 0.90745 0.89577 0.92409 0.89617 0.90659 0.89656 0.91909 0.90837 0.75698 0.82766 0.83671 0.81360 0.80879 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.49 37.16 0.35 -2.40 16 2 C 0.16 3.03 3.20 -67.93 -0.22 2.81 16 3 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 4 C 0.11 1.64 5.05 -4.04 -0.02 1.62 16 5 N -0.59 -8.98 2.73 -181.58 -0.50 -9.48 16 6 C 0.07 0.91 8.42 59.85 0.50 1.41 16 7 C 0.52 8.24 7.14 -10.99 -0.08 8.16 16 8 O -0.54 -9.81 15.42 5.55 0.09 -9.73 16 9 C 0.13 1.78 2.18 -69.08 -0.15 1.63 16 10 H 0.12 1.91 6.84 -51.93 -0.36 1.56 16 11 C -0.17 -1.87 9.12 37.16 0.34 -1.54 16 12 N -0.71 -9.73 4.95 -56.27 -0.28 -10.00 16 13 C 0.59 8.66 7.75 -12.90 -0.10 8.56 16 14 O -0.53 -9.19 16.50 5.18 0.09 -9.11 16 15 C -0.26 -3.17 6.45 -36.79 -0.24 -3.41 16 16 C -0.06 -0.59 10.01 -40.44 -0.40 -1.00 16 17 C -0.15 -1.26 10.15 -41.42 -0.42 -1.68 16 18 C -0.23 -1.80 10.92 29.18 0.32 -1.48 16 19 S 0.21 1.91 22.16 -107.50 -2.38 -0.47 16 20 N -0.74 -16.67 4.37 -53.43 -0.23 -16.90 16 21 C -0.24 -6.58 10.41 -15.06 -0.16 -6.73 16 22 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 23 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 24 N -0.93 -29.27 13.97 55.49 0.78 -28.49 16 25 Si 0.88 21.13 27.74 -169.99 -4.71 16.41 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.27 -5.69 4.90 56.52 0.28 -5.41 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 33 H 0.09 1.26 7.42 -51.93 -0.39 0.87 16 34 H 0.06 0.58 6.95 -51.93 -0.36 0.22 16 35 H 0.09 1.34 3.94 -51.93 -0.20 1.13 16 36 H 0.07 1.02 6.01 -51.93 -0.31 0.71 16 37 H 0.08 0.83 4.53 -51.93 -0.24 0.59 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.41 5.21 6.90 -40.82 -0.28 4.92 16 41 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 43 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.36 7.59 3.49 -40.82 -0.14 7.45 16 45 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -34.41 376.22 -8.04 -42.44 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -6.18 Total: 13.72 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -0.37 Total: 5.93 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -0.23 Total: -64.88 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.17 Total: -18.83 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.71 Total: 16.41 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.38 Total: -0.47 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.41 -8.04 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734336313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.849 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds