Wall clock time and date at job start Sat Apr 11 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47524 * 2 1 4 4 C 1.52997 * 109.47137 * 120.00513 * 2 1 3 5 5 N 1.46500 * 109.47357 * 174.99779 * 4 2 1 6 6 C 1.46498 * 119.99963 * 270.00236 * 5 4 2 7 7 C 1.34777 * 120.00084 * 89.99432 * 5 4 2 8 8 O 1.21283 * 119.99665 * 0.02562 * 7 5 4 9 9 C 1.50697 * 120.00075 * 180.02562 * 7 5 4 10 10 H 1.08998 * 109.46862 * 60.01098 * 9 7 5 11 11 C 1.52997 * 109.47466 * 300.00543 * 9 7 5 12 12 N 1.46506 * 109.47015 * 180.02562 * 9 7 5 13 13 C 1.34777 * 120.00033 * 205.00057 * 12 9 7 14 14 O 1.21709 * 119.99899 * 0.02562 * 13 12 9 15 15 C 1.46576 * 120.00011 * 180.02562 * 13 12 9 16 16 C 1.36654 * 125.45951 * 180.02562 * 15 13 12 17 17 C 1.37467 * 113.29820 * 179.97438 * 16 15 13 18 18 C 1.33815 * 115.10412 * 0.02562 * 17 16 15 19 19 S 1.70621 * 110.95214 * 359.76001 * 18 17 16 20 20 N 1.46499 * 109.46768 * 240.00482 * 2 1 3 21 21 C 1.36938 * 120.00370 * 85.00551 * 20 2 1 22 22 H 1.08004 * 119.99830 * 359.97438 * 21 20 2 23 23 C 1.38808 * 120.00363 * 180.02562 * 21 20 2 24 24 N 1.31617 * 120.00226 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99882 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46901 * 90.00416 * 25 23 21 27 27 H 1.48499 * 109.47269 * 210.00560 * 25 23 21 28 28 H 1.48496 * 109.47041 * 330.00575 * 25 23 21 29 29 H 1.08999 * 109.47227 * 59.99335 * 1 2 3 30 30 H 1.08996 * 109.47524 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46898 * 299.99664 * 1 2 3 32 32 H 1.08995 * 109.47374 * 54.99888 * 4 2 1 33 33 H 1.08999 * 109.47317 * 294.99729 * 4 2 1 34 34 H 1.09001 * 109.47076 * 269.99498 * 6 5 4 35 35 H 1.08996 * 109.47427 * 29.99981 * 6 5 4 36 36 H 1.08999 * 109.47290 * 149.99686 * 6 5 4 37 37 H 1.09002 * 109.47153 * 59.99773 * 11 9 7 38 38 H 1.09001 * 109.46832 * 299.99964 * 11 9 7 39 39 H 1.09004 * 109.47261 * 179.97438 * 11 9 7 40 40 H 0.96992 * 120.00062 * 25.00511 * 12 9 7 41 41 H 1.08001 * 123.34780 * 359.93848 * 16 15 13 42 42 H 1.07999 * 122.45122 * 180.02562 * 17 16 15 43 43 H 1.07996 * 124.52995 * 180.02562 * 18 17 16 44 44 H 0.97003 * 119.99715 * 264.99524 * 20 2 1 45 45 H 0.97003 * 120.00221 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.1257 -1.9921 0.5610 7 6 4.2676 0.1490 1.7155 8 8 3.7495 1.1137 2.2369 9 6 5.7695 0.0411 1.6546 10 1 6.0879 -0.0129 0.6136 11 6 6.2204 -1.2213 2.3921 12 7 6.3697 1.2174 2.2890 13 6 7.6100 1.6123 1.9395 14 8 8.2313 0.9919 1.0966 15 6 8.2108 2.7888 2.5745 16 6 9.4549 3.2862 2.3059 17 6 9.7663 4.4014 3.0470 18 6 8.8121 4.8047 3.8940 19 16 7.4436 3.7902 3.7995 20 7 2.0182 -0.6905 -1.1962 21 6 2.1491 -0.0073 -2.3758 22 1 1.8920 1.0405 -2.4243 23 6 2.6112 -0.6617 -3.5094 24 7 2.7365 -0.0052 -4.6432 25 14 3.0553 -2.4743 -3.4256 26 1 1.8578 -3.2925 -3.7446 27 1 4.1303 -2.7665 -4.4076 28 1 3.5307 -2.8048 -2.0582 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -1.7199 1.2950 33 1 1.7517 -0.1585 2.1369 34 1 4.2822 -2.7690 1.3094 35 1 3.4757 -2.3722 -0.2270 36 1 5.0850 -1.7022 0.1322 37 1 5.7738 -2.0967 1.9205 38 1 5.9019 -1.1672 3.4331 39 1 7.3067 -1.2996 2.3477 40 1 5.8745 1.7120 2.9605 41 1 10.1269 2.8465 1.5838 42 1 10.7119 4.9145 2.9525 43 1 8.8952 5.6609 4.5470 44 1 2.2490 -1.6317 -1.1527 45 1 3.0598 -0.4624 -5.4353 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734336313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:50 Heat of formation + Delta-G solvation = -31.426176 kcal Electronic energy + Delta-G solvation = -27643.809806 eV Core-core repulsion = 23788.290150 eV Total energy + Delta-G solvation = -3855.519656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73384 -40.53526 -38.53682 -38.10435 -36.31505 -35.93730 -34.11413 -32.46983 -31.33501 -30.34571 -28.24703 -27.43366 -26.26838 -25.51761 -24.45711 -22.49513 -21.81646 -21.05693 -20.16398 -19.85653 -19.57399 -17.93632 -17.81356 -17.08940 -16.83586 -16.63583 -16.47808 -16.28568 -15.90759 -15.60750 -15.22013 -14.91418 -14.67229 -14.36334 -14.30895 -13.99498 -13.89031 -13.71851 -13.60052 -13.47991 -13.31566 -13.24664 -12.95239 -12.78433 -12.75914 -12.58293 -12.32697 -12.21592 -11.95822 -11.78738 -11.67081 -11.36005 -11.02780 -10.94024 -10.45897 -9.89747 -9.70884 -9.57347 -9.25904 -8.00192 -5.34083 -0.54064 0.45189 0.91271 1.31705 1.34698 1.43496 1.43949 1.50816 1.62203 2.08035 2.20964 2.50570 3.24580 3.31815 3.56026 3.67323 3.94522 3.97626 4.07272 4.12243 4.16909 4.31931 4.32690 4.49402 4.52345 4.60958 4.62040 4.70650 4.73353 4.82567 4.84813 4.99672 5.01331 5.11302 5.15630 5.19036 5.23828 5.32770 5.34155 5.60533 5.77906 6.20615 6.23471 6.26680 6.90515 6.98497 7.09996 7.82652 8.06270 9.21930 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.003047 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.526487 B = 9187.300398 C = 9698.985620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.154 3.846 3 H 0.019 0.981 4 C 0.115 3.885 5 N -0.591 5.591 6 C 0.059 3.941 7 C 0.512 3.488 8 O -0.570 6.570 9 C 0.125 3.875 10 H 0.097 0.903 11 C -0.159 4.159 12 N -0.705 5.705 13 C 0.590 3.410 14 O -0.567 6.567 15 C -0.306 4.306 16 C -0.055 4.055 17 C -0.159 4.159 18 C -0.214 4.214 19 S 0.225 5.775 20 N -0.740 5.740 21 C -0.224 4.224 22 H 0.040 0.960 23 C -0.071 4.071 24 N -0.991 5.991 25 Si 0.952 3.048 26 H -0.281 1.281 27 H -0.304 1.304 28 H -0.222 1.222 29 H 0.028 0.972 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.410 0.590 41 H 0.149 0.851 42 H 0.173 0.827 43 H 0.203 0.797 44 H 0.368 0.632 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.472 0.385 24.741 26.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.045 3.955 3 H 0.038 0.962 4 C -0.008 4.008 5 N -0.322 5.322 6 C -0.083 4.083 7 C 0.299 3.701 8 O -0.450 6.450 9 C 0.017 3.983 10 H 0.115 0.885 11 C -0.217 4.217 12 N -0.357 5.357 13 C 0.379 3.621 14 O -0.448 6.448 15 C -0.426 4.426 16 C -0.090 4.090 17 C -0.189 4.189 18 C -0.352 4.352 19 S 0.492 5.508 20 N -0.386 5.386 21 C -0.355 4.355 22 H 0.058 0.942 23 C -0.262 4.262 24 N -0.642 5.642 25 Si 0.779 3.221 26 H -0.207 1.207 27 H -0.231 1.231 28 H -0.145 1.145 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.128 0.872 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.248 0.752 41 H 0.167 0.833 42 H 0.190 0.810 43 H 0.220 0.780 44 H 0.204 0.796 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.176 0.579 25.049 26.683 hybrid contribution 1.346 -0.145 -1.695 2.169 sum 10.522 0.434 23.354 25.619 Atomic orbital electron populations 1.22195 0.96261 1.02142 1.00770 1.20791 0.93598 0.94854 0.86213 0.96230 1.21905 0.78415 1.02893 0.97617 1.47593 1.06940 1.21408 1.56214 1.22503 0.99144 0.87803 0.98837 1.20647 0.89378 0.82179 0.77884 1.90638 1.75250 1.31948 1.47151 1.20811 0.89400 0.88069 1.00009 0.88496 1.22336 1.02935 0.95173 1.01281 1.45584 1.16070 1.30588 1.43489 1.17290 0.80881 0.82947 0.81007 1.90809 1.62792 1.57074 1.34164 1.24502 1.02337 1.04916 1.10873 1.21055 0.94046 0.95235 0.98630 1.20273 1.02842 0.97767 0.98054 1.25829 0.97766 1.06217 1.05363 1.83143 1.16302 1.18519 1.32839 1.42667 1.80048 1.09443 1.06420 1.18892 1.35173 0.93837 0.87628 0.94236 1.25605 1.02314 1.03350 0.94889 1.69923 1.54839 1.38064 1.01325 0.85542 0.77517 0.79689 0.79372 1.20701 1.23110 1.14538 0.95231 0.91511 0.91026 0.87195 0.88584 0.87798 0.91078 0.91032 0.87834 0.90546 0.91260 0.75206 0.83293 0.80983 0.78008 0.79581 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 9.49 71.98 0.68 -4.32 16 2 C 0.15 5.76 3.20 44.99 0.14 5.90 16 3 H 0.02 0.88 8.08 -2.39 -0.02 0.86 16 4 C 0.11 3.17 5.05 86.38 0.44 3.60 16 5 N -0.59 -16.68 2.73 -846.78 -2.31 -18.99 16 6 C 0.06 1.40 8.42 127.77 1.08 2.47 16 7 C 0.51 15.92 7.14 87.66 0.63 16.55 16 8 O -0.57 -20.49 15.42 -3.04 -0.05 -20.54 16 9 C 0.13 3.52 2.18 44.24 0.10 3.62 16 10 H 0.10 3.19 6.84 -2.39 -0.02 3.18 16 11 C -0.16 -3.21 9.12 71.98 0.66 -2.55 16 12 N -0.70 -19.75 4.95 -450.16 -2.23 -21.98 16 13 C 0.59 17.87 7.75 86.42 0.67 18.54 16 14 O -0.57 -20.81 16.50 -4.38 -0.07 -20.88 16 15 C -0.31 -7.44 6.45 24.08 0.16 -7.28 16 16 C -0.05 -1.16 10.01 21.72 0.22 -0.94 16 17 C -0.16 -2.33 10.15 21.08 0.21 -2.12 16 18 C -0.21 -2.72 10.92 66.81 0.73 -1.99 16 19 S 0.22 3.84 22.16 -56.49 -1.25 2.59 16 20 N -0.74 -32.69 4.37 -322.95 -1.41 -34.10 16 21 C -0.22 -12.82 10.41 84.03 0.87 -11.94 16 22 H 0.04 2.59 8.06 -2.91 -0.02 2.57 16 23 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 24 N -0.99 -64.84 13.97 21.65 0.30 -64.54 16 25 Si 0.95 43.31 27.74 68.60 1.90 45.22 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 28 H -0.22 -8.08 4.90 99.48 0.49 -7.59 16 29 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.11 2.33 8.07 -2.39 -0.02 2.31 16 33 H 0.10 2.53 7.42 -2.39 -0.02 2.51 16 34 H 0.10 1.54 6.95 -2.39 -0.02 1.52 16 35 H 0.07 1.90 3.94 -2.39 -0.01 1.89 16 36 H 0.07 1.77 6.01 -2.39 -0.01 1.75 16 37 H 0.10 1.66 4.53 -2.39 -0.01 1.65 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.41 10.64 6.90 -92.71 -0.64 10.00 16 41 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 42 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.20 1.17 8.06 -2.91 -0.02 1.15 16 44 H 0.37 14.68 3.49 -92.71 -0.32 14.36 16 45 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -81.07 376.22 1.78 -79.29 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -0.15 Total: 38.11 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 7.05 Total: 15.82 kcal Atomic # 7 Polarization: -133.97 SS G_CDS: -5.65 Total: -139.61 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -0.12 Total: -41.41 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.90 Total: 45.22 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.25 Total: 2.59 kcal Total: -81.07 1.78 -79.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734336313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.862 kcal (2) G-P(sol) polarization free energy of solvation -81.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds