Wall clock time and date at job start Sat Apr 11 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 109.47427 * 2 1 4 4 N 1.46503 * 109.46596 * 120.00114 * 2 1 3 5 5 C 1.34769 * 120.00009 * 275.26786 * 4 2 1 6 6 O 1.21701 * 120.00302 * 359.73749 * 5 4 2 7 7 C 1.46592 * 119.99844 * 179.72619 * 5 4 2 8 8 C 1.36647 * 125.45538 * 180.02562 * 7 5 4 9 9 C 1.37472 * 113.29296 * 180.02562 * 8 7 5 10 10 C 1.33817 * 115.10365 * 0.02562 * 9 8 7 11 11 S 1.70613 * 110.95287 * 359.71994 * 10 9 8 12 12 C 1.50697 * 109.46818 * 239.99929 * 2 1 3 13 13 O 1.21288 * 120.00087 * 254.21732 * 12 2 1 14 14 N 1.34779 * 120.00001 * 74.22310 * 12 2 1 15 15 C 1.46498 * 119.99874 * 3.62522 * 14 12 2 16 16 C 1.46499 * 120.00108 * 183.62099 * 14 12 2 17 17 C 1.53008 * 109.46885 * 89.99918 * 16 14 12 18 18 H 1.08989 * 109.46988 * 295.00055 * 17 16 14 19 19 C 1.52994 * 109.46954 * 174.99956 * 17 16 14 20 20 N 1.46504 * 109.46753 * 55.00251 * 17 16 14 21 21 C 1.36931 * 119.99572 * 204.99673 * 20 17 16 22 22 H 1.08003 * 120.00181 * 0.02562 * 21 20 17 23 23 C 1.38816 * 119.99925 * 179.97438 * 21 20 17 24 24 N 1.31615 * 120.00143 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 119.99816 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.46962 * 89.99991 * 25 23 21 27 27 H 1.48495 * 109.47392 * 209.99547 * 25 23 21 28 28 H 1.48495 * 109.47539 * 329.99941 * 25 23 21 29 29 H 1.09001 * 109.46523 * 55.30492 * 1 2 3 30 30 H 1.09002 * 109.47265 * 175.30259 * 1 2 3 31 31 H 1.08999 * 109.47257 * 295.30914 * 1 2 3 32 32 H 0.97006 * 119.99344 * 95.00328 * 4 2 1 33 33 H 1.08000 * 123.35446 * 359.97438 * 8 7 5 34 34 H 1.07999 * 122.44620 * 180.02562 * 9 8 7 35 35 H 1.07998 * 124.51983 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.47359 * 84.59446 * 15 14 12 37 37 H 1.08998 * 109.46870 * 204.59612 * 15 14 12 38 38 H 1.08995 * 109.47056 * 324.59709 * 15 14 12 39 39 H 1.08999 * 109.47289 * 210.00197 * 16 14 12 40 40 H 1.09002 * 109.47328 * 330.00618 * 16 14 12 41 41 H 1.09006 * 109.47383 * 300.00018 * 19 17 16 42 42 H 1.09002 * 109.47126 * 59.99957 * 19 17 16 43 43 H 1.09006 * 109.47316 * 180.02562 * 19 17 16 44 44 H 0.96995 * 119.99704 * 24.99832 * 20 17 16 45 45 H 0.96998 * 120.00406 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1418 -0.0197 2.3585 6 8 1.8523 1.1611 2.4132 7 6 2.6246 -0.7123 3.5568 8 6 2.7914 -0.1435 4.7880 9 6 3.2591 -1.0237 5.7348 10 6 3.4692 -2.2704 5.2962 11 16 3.0763 -2.4095 3.6417 12 6 2.0323 -0.7104 -1.2304 13 8 2.5038 -1.8241 -1.1378 14 7 1.9577 -0.1082 -2.4339 15 6 1.4622 1.2666 -2.5356 16 6 2.3722 -0.8285 -3.6404 17 6 1.1722 -1.5761 -4.2256 18 1 0.8483 -2.3469 -3.5265 19 6 1.5733 -2.2258 -5.5513 20 7 0.0748 -0.6333 -4.4561 21 6 -1.2191 -1.0810 -4.4773 22 1 -1.4306 -2.1289 -4.3237 23 6 -2.2591 -0.1877 -4.6952 24 7 -3.5028 -0.6178 -4.7150 25 14 -1.8933 1.6248 -4.9602 26 1 -1.6978 1.8836 -6.4093 27 1 -3.0317 2.4377 -4.4615 28 1 -0.6598 1.9943 -4.2205 29 1 -0.3632 0.5850 -0.8450 30 1 -0.3634 -1.0242 -0.0842 31 1 -0.3634 0.4393 0.9290 32 1 2.2490 -1.6319 1.1525 33 1 2.5779 0.8945 4.9964 34 1 3.4434 -0.7305 6.7577 35 1 3.8338 -3.0815 5.9090 36 1 2.2799 1.9625 -2.3477 37 1 1.0635 1.4361 -3.5357 38 1 0.6745 1.4243 -1.7989 39 1 2.7515 -0.1185 -4.3752 40 1 3.1560 -1.5421 -3.3863 41 1 1.8974 -1.4549 -6.2505 42 1 2.3900 -2.9272 -5.3799 43 1 0.7184 -2.7580 -5.9685 44 1 0.2648 0.3078 -4.5937 45 1 -4.2295 0.0063 -4.8677 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734336314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:54 Heat of formation + Delta-G solvation = -10.816674 kcal Electronic energy + Delta-G solvation = -27644.410855 eV Core-core repulsion = 23789.784894 eV Total energy + Delta-G solvation = -3854.625961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.54761 -39.41548 -37.75043 -36.66485 -35.03805 -34.46728 -32.21961 -31.31550 -29.72765 -29.35866 -27.04713 -26.18464 -25.42322 -23.83924 -23.13783 -21.41868 -20.33788 -19.93570 -19.21396 -18.73703 -17.68460 -16.81224 -16.75482 -15.92087 -15.74433 -15.49986 -15.23128 -14.80777 -14.70818 -14.01832 -13.98322 -13.71793 -13.35473 -13.23734 -13.07332 -13.02886 -12.64677 -12.60106 -12.43488 -12.27166 -12.11577 -11.83767 -11.64872 -11.57864 -11.37618 -11.25479 -10.95879 -10.72668 -10.60956 -10.26901 -10.10104 -9.75462 -9.57926 -9.36109 -9.12520 -8.99972 -8.90662 -8.41477 -7.30148 -5.79668 -3.15136 0.21519 1.17036 1.58317 2.10503 2.64267 2.69976 3.00201 3.22156 3.32407 3.35728 3.40271 4.41009 4.52795 4.58214 4.69264 4.98111 5.08805 5.09907 5.14991 5.15839 5.26424 5.39234 5.47787 5.58237 5.62539 5.63568 5.70147 5.81607 5.87134 5.93730 5.97708 6.00178 6.12158 6.14936 6.20438 6.36477 6.42761 6.60114 6.74607 6.99800 7.28127 7.46127 7.95447 7.96822 8.20485 8.38485 9.16563 9.88423 10.08334 11.38910 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017057 B = 0.002870 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.114884 B = 9752.837417 C =10370.082968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.128 3.872 3 H 0.111 0.889 4 N -0.708 5.708 5 C 0.594 3.406 6 O -0.530 6.530 7 C -0.266 4.266 8 C -0.056 4.056 9 C -0.152 4.152 10 C -0.233 4.233 11 S 0.213 5.787 12 C 0.517 3.483 13 O -0.545 6.545 14 N -0.589 5.589 15 C 0.064 3.936 16 C 0.106 3.894 17 C 0.161 3.839 18 H 0.060 0.940 19 C -0.163 4.163 20 N -0.744 5.744 21 C -0.236 4.236 22 H 0.088 0.912 23 C 0.003 3.997 24 N -0.934 5.934 25 Si 0.879 3.121 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.274 1.274 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.408 0.592 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.169 0.831 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.045 0.955 42 H 0.041 0.959 43 H 0.061 0.939 44 H 0.357 0.643 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.300 -0.038 16.558 23.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.020 3.980 3 H 0.129 0.871 4 N -0.361 5.361 5 C 0.380 3.620 6 O -0.408 6.408 7 C -0.386 4.386 8 C -0.090 4.090 9 C -0.183 4.183 10 C -0.371 4.371 11 S 0.480 5.520 12 C 0.304 3.696 13 O -0.423 6.423 14 N -0.320 5.320 15 C -0.079 4.079 16 C -0.017 4.017 17 C 0.050 3.950 18 H 0.078 0.922 19 C -0.223 4.223 20 N -0.389 5.389 21 C -0.366 4.366 22 H 0.106 0.894 23 C -0.192 4.192 24 N -0.582 5.582 25 Si 0.710 3.290 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.200 1.200 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.245 0.755 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.187 0.813 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.191 0.809 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.165 -1.127 15.574 22.475 hybrid contribution 0.066 2.042 0.778 2.187 sum 16.231 0.915 16.352 23.058 Atomic orbital electron populations 1.22191 0.91659 1.04247 1.03872 1.20820 0.96506 0.97616 0.83031 0.87109 1.45653 1.67226 1.14715 1.08521 1.16893 0.77348 0.86100 0.81659 1.90832 1.50431 1.14876 1.84677 1.24617 1.16289 0.98792 0.98924 1.20807 0.96480 1.01506 0.90171 1.20052 1.04149 0.92531 1.01547 1.25389 1.08397 1.02325 1.00970 1.83307 1.58388 1.05641 1.04646 1.20344 0.78383 0.86260 0.84644 1.90649 1.46177 1.19482 1.85957 1.47489 1.63397 1.14864 1.06289 1.22257 0.99134 0.81398 1.05072 1.21964 0.97995 0.96538 0.85179 1.20620 0.87359 0.92438 0.94543 0.92241 1.22341 1.00633 1.00094 0.99254 1.42799 1.02940 1.05338 1.87790 1.19045 0.81091 0.95472 1.41016 0.89377 1.24656 0.95086 0.97256 1.02207 1.69690 0.97987 1.33866 1.56668 0.86711 0.77063 0.87137 0.78046 1.21309 1.21817 1.20029 0.89616 0.91148 0.90954 0.75509 0.82822 0.83696 0.81341 0.92768 0.89637 0.90388 0.90772 0.89539 0.93550 0.93957 0.92020 0.80882 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.22 37.16 0.34 -2.04 16 2 C 0.13 1.83 2.15 -69.08 -0.15 1.69 16 3 H 0.11 1.52 6.91 -51.93 -0.36 1.16 16 4 N -0.71 -9.58 5.02 -56.27 -0.28 -9.86 16 5 C 0.59 8.19 7.74 -12.89 -0.10 8.09 16 6 O -0.53 -8.64 16.51 5.19 0.09 -8.55 16 7 C -0.27 -3.01 6.45 -36.79 -0.24 -3.25 16 8 C -0.06 -0.55 10.01 -40.44 -0.40 -0.96 16 9 C -0.15 -1.17 10.15 -41.41 -0.42 -1.59 16 10 C -0.23 -1.69 10.92 29.18 0.32 -1.37 16 11 S 0.21 1.87 22.16 -107.50 -2.38 -0.51 16 12 C 0.52 8.26 6.97 -10.99 -0.08 8.18 16 13 O -0.54 -9.74 15.42 5.55 0.09 -9.66 16 14 N -0.59 -9.06 2.73 -181.57 -0.50 -9.55 16 15 C 0.06 0.89 9.39 59.85 0.56 1.45 16 16 C 0.11 1.62 5.05 -4.04 -0.02 1.60 16 17 C 0.16 2.97 3.20 -67.93 -0.22 2.76 16 18 H 0.06 1.25 8.08 -51.94 -0.42 0.83 16 19 C -0.16 -2.72 9.49 37.15 0.35 -2.37 16 20 N -0.74 -16.19 4.37 -53.43 -0.23 -16.43 16 21 C -0.24 -6.33 10.41 -15.06 -0.16 -6.48 16 22 H 0.09 2.61 8.06 -52.48 -0.42 2.18 16 23 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 24 N -0.93 -28.59 13.97 55.49 0.78 -27.82 16 25 Si 0.88 20.69 27.74 -169.99 -4.71 15.98 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.27 -5.59 5.04 56.52 0.29 -5.31 16 29 H 0.09 1.31 5.83 -51.93 -0.30 1.01 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.41 5.29 6.83 -40.82 -0.28 5.01 16 33 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.17 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.31 4.25 -51.93 -0.22 1.08 16 38 H 0.08 1.08 4.58 -51.93 -0.24 0.84 16 39 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 40 H 0.09 1.28 7.37 -51.93 -0.38 0.90 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.36 7.44 3.50 -40.82 -0.14 7.30 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 378.63 15.07 5.71 5.71 Total: -1.00 -32.89 378.63 -8.00 -40.89 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -6.24 Total: 14.08 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -0.30 Total: 5.72 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: -0.24 Total: -63.65 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.17 Total: -18.21 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.71 Total: 15.98 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.38 Total: -0.51 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.89 -8.00 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734336314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.072 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds