Wall clock time and date at job start Sat Apr 11 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47268 * 2 1 4 4 C 1.53003 * 109.47070 * 240.00317 * 2 1 3 5 5 N 1.46497 * 109.47218 * 185.00078 * 4 2 1 6 6 C 1.34774 * 120.00310 * 180.02562 * 5 4 2 7 7 O 1.21697 * 119.99768 * 5.11530 * 6 5 4 8 8 C 1.46671 * 120.00275 * 185.12061 * 6 5 4 9 9 C 1.37873 * 126.23652 * 354.28444 * 8 6 5 10 10 C 1.39832 * 107.08919 * 179.97438 * 9 8 6 11 11 C 1.35451 * 107.86499 * 359.97438 * 10 9 8 12 12 N 1.35535 * 108.87001 * 0.02562 * 11 10 9 13 13 C 1.46502 * 125.67571 * 179.97438 * 12 11 10 14 14 N 1.46502 * 109.47145 * 120.00202 * 2 1 3 15 15 C 1.46497 * 119.99640 * 59.99949 * 14 2 1 16 16 C 1.34771 * 120.00033 * 239.99901 * 14 2 1 17 17 O 1.21285 * 119.99912 * 0.02562 * 16 14 2 18 18 C 1.50702 * 120.00062 * 180.02562 * 16 14 2 19 19 S 1.81000 * 109.47015 * 179.97438 * 18 16 14 20 20 C 1.76199 * 99.99779 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00386 * 359.97438 * 20 19 18 22 22 C 1.38804 * 119.99978 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99917 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99867 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47252 * 89.99916 * 24 22 20 26 26 H 1.48501 * 109.47278 * 209.99966 * 24 22 20 27 27 H 1.48506 * 109.47452 * 330.00014 * 24 22 20 28 28 H 1.09007 * 109.46973 * 59.99655 * 1 2 3 29 29 H 1.08994 * 109.47355 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46957 * 299.99808 * 1 2 3 31 31 H 1.09004 * 109.47108 * 65.00198 * 4 2 1 32 32 H 1.09001 * 109.47093 * 304.99985 * 4 2 1 33 33 H 0.96999 * 119.99859 * 359.97438 * 5 4 2 34 34 H 1.08003 * 126.44923 * 359.71872 * 9 8 6 35 35 H 1.07999 * 126.06740 * 179.97438 * 10 9 8 36 36 H 1.08004 * 125.56454 * 180.02562 * 11 10 9 37 37 H 1.08995 * 109.47635 * 273.94452 * 13 12 11 38 38 H 1.09006 * 109.47051 * 33.94201 * 13 12 11 39 39 H 1.08996 * 109.47105 * 153.94176 * 13 12 11 40 40 H 1.09009 * 109.46977 * 90.00387 * 15 14 2 41 41 H 1.08999 * 109.46712 * 209.99409 * 15 14 2 42 42 H 1.08994 * 109.47740 * 329.99735 * 15 14 2 43 43 H 1.08996 * 109.47134 * 300.00214 * 18 16 14 44 44 H 1.09004 * 109.46712 * 60.00074 * 18 16 14 45 45 H 0.97000 * 120.00168 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1731 -1.4282 -2.1913 7 8 3.5793 -1.8011 -3.1860 8 6 5.6211 -1.6338 -2.0814 9 6 6.4360 -1.1686 -1.0713 10 6 7.7359 -1.5933 -1.3634 11 6 7.6933 -2.2955 -2.5209 12 7 6.4140 -2.3273 -2.9675 13 6 5.9520 -2.9893 -4.1900 14 7 2.0183 -0.6907 1.1962 15 6 1.6644 -2.0932 1.4279 16 6 2.7932 -0.0357 2.0833 17 8 3.0858 1.1256 1.8916 18 6 3.2960 -0.7464 3.3135 19 16 4.3021 0.3911 4.2984 20 6 4.7458 -0.6702 5.6330 21 1 4.3952 -1.6916 5.6504 22 6 5.5453 -0.1934 6.6626 23 7 5.9723 1.0514 6.6418 24 14 6.0151 -1.3184 8.0779 25 1 7.2827 -2.0204 7.7524 26 1 6.1985 -0.5122 9.3114 27 1 4.9378 -2.3173 8.2950 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.7516 -0.1582 -2.1370 32 1 1.6054 -1.7197 -1.2953 33 1 3.9824 -0.4622 -0.4320 34 1 6.1289 -0.5826 -0.2176 35 1 8.6173 -1.3964 -0.7713 36 1 8.5404 -2.7551 -3.0084 37 1 6.0668 -2.3116 -5.0359 38 1 6.5437 -3.8885 -4.3621 39 1 4.9019 -3.2606 -4.0817 40 1 2.4158 -2.7377 0.9715 41 1 1.6238 -2.2853 2.5000 42 1 0.6904 -2.3002 0.9846 43 1 2.4485 -1.0893 3.9068 44 1 3.9017 -1.6025 3.0163 45 1 6.5313 1.3846 7.3611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734746655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:56 Heat of formation + Delta-G solvation = -17.955264 kcal Electronic energy + Delta-G solvation = -27238.492347 eV Core-core repulsion = 23383.556834 eV Total energy + Delta-G solvation = -3854.935513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.44915 -40.03521 -38.90447 -36.51693 -34.42310 -32.96108 -32.44135 -32.08967 -29.61428 -28.74397 -26.93578 -26.60726 -26.31893 -25.49580 -22.61797 -21.70769 -20.56817 -19.77787 -19.06983 -17.97519 -17.75218 -16.98837 -16.27698 -16.04681 -15.83813 -15.44707 -15.25891 -14.81854 -14.75000 -14.22331 -14.12084 -13.64900 -13.39662 -13.36437 -13.19863 -13.14808 -12.99134 -12.60950 -12.43035 -12.42231 -12.34921 -12.28014 -12.08756 -12.02340 -11.83506 -11.11930 -11.07037 -11.02873 -10.76733 -10.11099 -9.82235 -9.46373 -9.24269 -9.07689 -8.81588 -8.65721 -8.30453 -8.25184 -6.51893 -6.22970 -3.93642 1.37449 2.49001 2.67637 2.83430 2.94222 3.21661 3.22650 3.27952 3.30279 3.32428 3.57100 4.18986 4.45930 4.63786 4.66343 4.84203 4.87440 5.00983 5.01630 5.04241 5.06720 5.12486 5.31085 5.32016 5.34562 5.41646 5.43994 5.46778 5.49356 5.55374 5.70036 5.84686 5.88223 5.97707 6.05038 6.10861 6.14629 6.25078 6.57202 6.67198 6.89285 7.09234 7.37817 7.43183 7.58590 8.06608 8.33908 8.45186 9.22681 10.84367 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010046 B = 0.003320 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.499673 B = 8432.465232 C =10477.615784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.122 3.878 3 H 0.111 0.889 4 C 0.116 3.884 5 N -0.712 5.712 6 C 0.593 3.407 7 O -0.559 6.559 8 C -0.061 4.061 9 C -0.131 4.131 10 C -0.203 4.203 11 C 0.012 3.988 12 N -0.414 5.414 13 C 0.067 3.933 14 N -0.619 5.619 15 C 0.078 3.922 16 C 0.532 3.468 17 O -0.515 6.515 18 C -0.151 4.151 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.075 3.925 23 N -0.867 5.867 24 Si 0.917 3.083 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.409 0.591 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.168 0.832 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.057 -8.696 -19.239 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.018 3.982 3 H 0.128 0.872 4 C -0.009 4.009 5 N -0.363 5.363 6 C 0.381 3.619 7 O -0.439 6.439 8 C -0.173 4.173 9 C -0.157 4.157 10 C -0.227 4.227 11 C -0.123 4.123 12 N -0.087 5.087 13 C -0.074 4.074 14 N -0.356 5.356 15 C -0.065 4.065 16 C 0.320 3.680 17 O -0.389 6.389 18 C -0.302 4.302 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.245 0.755 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.185 0.815 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.121 0.879 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.128 -7.280 -20.448 22.303 hybrid contribution 0.281 -2.043 1.530 2.568 sum -4.847 -9.324 -18.918 21.641 Atomic orbital electron populations 1.22052 0.93733 1.02644 1.03143 1.21300 0.94893 0.98632 0.83343 0.87154 1.21755 0.79590 1.01402 0.98148 1.45573 1.07692 1.59383 1.23701 1.16950 0.84934 0.77398 0.82598 1.90746 1.70266 1.52562 1.30367 1.19979 0.91823 1.09412 0.96121 1.21526 0.93264 1.02519 0.98438 1.20904 0.98081 1.05178 0.98535 1.22027 0.86277 1.05604 0.98403 1.43803 1.06729 1.39463 1.18735 1.22239 1.03292 0.97340 0.84533 1.47953 1.52261 1.12649 1.22750 1.21762 1.00623 0.81449 1.02714 1.20439 0.77088 0.86776 0.83661 1.90710 1.56299 1.16332 1.75555 1.23571 1.04326 1.04772 0.97500 1.85378 1.60858 1.15150 1.21853 1.22851 1.37343 0.99704 1.08465 0.90976 1.24975 0.95097 0.95500 0.97905 1.70009 1.33072 1.14320 1.32819 0.86189 0.78926 0.79958 0.80556 1.20237 1.20774 1.19714 0.91133 0.91996 0.91311 0.90278 0.91122 0.75528 0.83533 0.83705 0.81451 0.90780 0.90196 0.87937 0.92763 0.90493 0.91170 0.89231 0.89189 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.17 37.16 0.34 -0.97 16 2 C 0.12 1.33 2.80 -67.93 -0.19 1.14 16 3 H 0.11 1.42 6.90 -51.93 -0.36 1.06 16 4 C 0.12 1.21 4.97 -4.04 -0.02 1.19 16 5 N -0.71 -8.86 5.37 -61.62 -0.33 -9.19 16 6 C 0.59 8.21 7.77 -12.86 -0.10 8.11 16 7 O -0.56 -8.58 14.67 5.19 0.08 -8.50 16 8 C -0.06 -0.82 6.88 -81.98 -0.56 -1.38 16 9 C -0.13 -1.75 10.35 -39.12 -0.41 -2.16 16 10 C -0.20 -2.42 10.81 -39.98 -0.43 -2.85 16 11 C 0.01 0.12 11.38 -16.91 -0.19 -0.07 16 12 N -0.41 -4.81 3.16 -120.24 -0.38 -5.19 16 13 C 0.07 0.59 10.64 59.85 0.64 1.23 16 14 N -0.62 -7.77 2.24 -173.93 -0.39 -8.16 16 15 C 0.08 0.77 9.40 59.85 0.56 1.33 16 16 C 0.53 9.20 7.40 -10.99 -0.08 9.12 16 17 O -0.51 -10.70 15.19 5.55 0.08 -10.61 16 18 C -0.15 -2.90 4.71 36.01 0.17 -2.73 16 19 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 20 C -0.54 -14.89 9.50 30.94 0.29 -14.59 16 21 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 24 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.44 6.66 -51.93 -0.35 0.10 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.71 7.84 -51.93 -0.41 0.30 16 33 H 0.41 5.41 6.77 -40.82 -0.28 5.14 16 34 H 0.15 1.97 7.45 -52.48 -0.39 1.58 16 35 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 1.06 6.23 -51.93 -0.32 0.74 16 40 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 41 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 42 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 43 H 0.09 1.61 7.40 -51.92 -0.38 1.23 16 44 H 0.09 1.61 8.11 -51.91 -0.42 1.19 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 387.90 15.07 5.85 5.85 Total: -1.00 -35.12 387.90 -8.18 -43.30 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.50 Total: 5.80 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.64 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.37 Total: -47.49 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.16 Total: -19.12 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.12 -8.18 -43.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734746655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.344 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds