Wall clock time and date at job start Sat Apr 11 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47521 * 2 1 4 4 C 1.53006 * 109.46821 * 119.99780 * 2 1 3 5 5 N 1.46503 * 109.46877 * 175.00294 * 4 2 1 6 6 C 1.34777 * 120.00143 * 180.02562 * 5 4 2 7 7 O 1.21703 * 119.99717 * 355.22713 * 6 5 4 8 8 C 1.46679 * 120.00244 * 175.22569 * 6 5 4 9 9 C 1.37867 * 126.23066 * 358.05062 * 8 6 5 10 10 C 1.39837 * 107.08208 * 179.97438 * 9 8 6 11 11 C 1.35449 * 107.86567 * 359.97438 * 10 9 8 12 12 N 1.35532 * 108.87355 * 359.73227 * 11 10 9 13 13 C 1.46499 * 125.68088 * 180.30387 * 12 11 10 14 14 N 1.46496 * 109.47293 * 239.99414 * 2 1 3 15 15 C 1.46498 * 120.00296 * 300.00334 * 14 2 1 16 16 C 1.34781 * 119.99538 * 120.00243 * 14 2 1 17 17 O 1.21279 * 120.00421 * 359.97438 * 16 14 2 18 18 C 1.50699 * 119.99660 * 180.02562 * 16 14 2 19 19 S 1.81005 * 109.47204 * 179.97438 * 18 16 14 20 20 C 1.76202 * 100.00137 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00088 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99590 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99621 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00271 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47352 * 89.99802 * 24 22 20 26 26 H 1.48503 * 109.46901 * 209.99934 * 24 22 20 27 27 H 1.48500 * 109.46975 * 329.99656 * 24 22 20 28 28 H 1.09002 * 109.47030 * 59.99915 * 1 2 3 29 29 H 1.08998 * 109.47055 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47214 * 300.00454 * 1 2 3 31 31 H 1.08992 * 109.47045 * 55.00529 * 4 2 1 32 32 H 1.08998 * 109.46856 * 294.99720 * 4 2 1 33 33 H 0.97003 * 119.99922 * 359.97438 * 5 4 2 34 34 H 1.07998 * 126.46470 * 359.95980 * 9 8 6 35 35 H 1.08000 * 126.06587 * 180.02562 * 10 9 8 36 36 H 1.08004 * 125.56352 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.47208 * 265.97625 * 13 12 11 38 38 H 1.08994 * 109.47276 * 25.97956 * 13 12 11 39 39 H 1.09006 * 109.46956 * 145.97882 * 13 12 11 40 40 H 1.09000 * 109.47220 * 89.99970 * 15 14 2 41 41 H 1.08998 * 109.46748 * 209.99639 * 15 14 2 42 42 H 1.08997 * 109.47115 * 329.99910 * 15 14 2 43 43 H 1.09004 * 109.47158 * 299.99378 * 18 16 14 44 44 H 1.08994 * 109.48119 * 59.99547 * 18 16 14 45 45 H 0.96999 * 119.99745 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1730 -1.4291 2.1909 7 8 3.5781 -1.8085 3.1825 8 6 5.6223 -1.6278 2.0842 9 6 6.4150 -1.2848 1.0096 10 6 7.7255 -1.6502 1.3326 11 6 7.7109 -2.1974 2.5716 12 7 6.4399 -2.1839 3.0419 13 6 6.0075 -2.6818 4.3501 14 7 2.0183 -0.6907 -1.1960 15 6 1.6644 -2.0933 -1.4278 16 6 2.7933 -0.0357 -2.0832 17 8 3.0859 1.1256 -1.8916 18 6 3.2952 -0.7460 -3.3139 19 16 4.3003 0.3918 -4.2995 20 6 4.7432 -0.6693 -5.6347 21 1 4.3926 -1.6906 -5.6519 22 6 5.5417 -0.1921 -6.6648 23 7 5.8722 -0.9846 -7.6626 24 14 6.1475 1.5747 -6.6354 25 1 7.4515 1.6392 -5.9281 26 1 6.3146 2.0640 -8.0275 27 1 5.1576 2.4256 -5.9272 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6054 -1.7197 1.2952 32 1 1.7516 -0.1582 2.1370 33 1 3.9823 -0.4627 0.4317 34 1 6.0858 -0.8214 0.0913 35 1 8.5951 -1.5187 0.7058 36 1 8.5723 -2.5783 3.1002 37 1 5.6723 -3.7145 4.2532 38 1 6.8413 -2.6347 5.0505 39 1 5.1871 -2.0667 4.7199 40 1 0.7376 -2.1445 -1.9992 41 1 2.4629 -2.5819 -1.9862 42 1 1.5295 -2.5969 -0.4707 43 1 3.9006 -1.6026 -3.0175 44 1 2.4474 -1.0883 -3.9072 45 1 6.4305 -0.6512 -8.3823 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734746657.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:58 Heat of formation + Delta-G solvation = -18.029234 kcal Electronic energy + Delta-G solvation = -27291.652114 eV Core-core repulsion = 23436.713393 eV Total energy + Delta-G solvation = -3854.938721 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.48725 -40.13142 -38.96294 -36.60773 -34.47445 -33.01054 -32.45257 -32.15942 -29.66154 -28.88616 -26.96535 -26.64406 -26.40246 -25.62860 -22.67543 -21.79533 -20.61251 -19.82886 -19.14624 -18.02686 -17.76579 -17.10539 -16.32609 -16.08344 -15.90446 -15.59114 -15.30813 -15.00288 -14.70808 -14.32511 -14.02736 -13.67604 -13.47279 -13.40095 -13.33216 -13.15675 -12.91220 -12.80705 -12.56775 -12.51435 -12.41120 -12.27519 -12.20248 -12.13430 -11.91395 -11.27620 -11.19982 -11.02169 -10.61045 -10.16326 -9.87654 -9.57055 -9.30069 -9.01767 -8.85353 -8.74465 -8.51801 -8.34430 -6.94234 -6.30198 -4.02335 1.33462 2.45093 2.62786 2.64283 2.81427 3.10066 3.25120 3.28606 3.32171 3.49033 3.56759 4.31371 4.39146 4.57296 4.60205 4.67443 4.81661 4.83953 4.96685 5.00795 5.01431 5.08974 5.15065 5.27220 5.27957 5.30418 5.36014 5.42251 5.43131 5.44758 5.64344 5.73337 5.81866 5.91458 5.97877 6.00513 6.10217 6.19299 6.48290 6.62977 6.85228 7.05419 7.30941 7.34529 7.92784 8.02440 8.31966 8.40490 9.15949 10.79058 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010270 B = 0.003457 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.675882 B = 8097.986651 C =10094.381773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 H 0.110 0.890 4 C 0.114 3.886 5 N -0.713 5.713 6 C 0.592 3.408 7 O -0.558 6.558 8 C -0.061 4.061 9 C -0.131 4.131 10 C -0.203 4.203 11 C 0.013 3.987 12 N -0.414 5.414 13 C 0.071 3.929 14 N -0.618 5.618 15 C 0.077 3.923 16 C 0.531 3.469 17 O -0.517 6.517 18 C -0.122 4.122 19 S -0.141 6.141 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.408 0.592 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.169 0.831 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.891 -3.814 22.284 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.019 3.981 3 H 0.128 0.872 4 C -0.010 4.010 5 N -0.364 5.364 6 C 0.381 3.619 7 O -0.438 6.438 8 C -0.174 4.174 9 C -0.158 4.158 10 C -0.227 4.227 11 C -0.122 4.122 12 N -0.087 5.087 13 C -0.070 4.070 14 N -0.354 5.354 15 C -0.067 4.067 16 C 0.319 3.681 17 O -0.391 6.391 18 C -0.273 4.273 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.244 0.756 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.186 0.814 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.963 -2.531 23.435 24.088 hybrid contribution 0.327 -0.786 -0.916 1.250 sum -4.636 -3.318 22.519 23.230 Atomic orbital electron populations 1.22037 0.93577 1.02765 1.03094 1.21312 0.95013 0.98569 0.83213 0.87178 1.21758 0.79619 1.01503 0.98141 1.45569 1.07663 1.59429 1.23778 1.16953 0.84988 0.77347 0.82610 1.90763 1.70174 1.52337 1.30570 1.19974 0.91531 1.12992 0.92854 1.21508 0.93341 1.03024 0.97895 1.20905 0.97894 1.07110 0.96828 1.22039 0.86631 1.06468 0.97080 1.43812 1.06657 1.44692 1.13557 1.22188 1.02144 1.01174 0.81521 1.47926 1.52038 1.12723 1.22724 1.21790 1.01497 0.81308 1.02056 1.20408 0.77228 0.86817 0.83683 1.90706 1.56469 1.16340 1.75617 1.23325 1.03857 1.03372 0.96700 1.84782 1.63680 1.18703 1.24324 1.22299 1.37475 1.00174 1.06914 0.89411 1.24710 0.94451 0.98085 0.94010 1.69939 1.35640 1.36025 1.10058 0.86744 0.81400 0.85149 0.78609 1.19162 1.19984 1.15929 0.91352 0.91963 0.91156 0.90987 0.90190 0.75598 0.83610 0.83701 0.81415 0.90715 0.90020 0.88415 0.92368 0.90424 0.91223 0.88448 0.88468 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.19 37.16 0.34 -0.90 16 2 C 0.12 1.26 2.80 -67.93 -0.19 1.07 16 3 H 0.11 1.34 6.90 -51.93 -0.36 0.98 16 4 C 0.11 1.14 4.92 -4.04 -0.02 1.12 16 5 N -0.71 -8.45 5.37 -61.61 -0.33 -8.78 16 6 C 0.59 7.94 7.78 -12.85 -0.10 7.84 16 7 O -0.56 -8.35 14.80 5.19 0.08 -8.28 16 8 C -0.06 -0.79 6.89 -81.98 -0.56 -1.36 16 9 C -0.13 -1.69 10.35 -39.12 -0.40 -2.10 16 10 C -0.20 -2.34 10.81 -39.98 -0.43 -2.77 16 11 C 0.01 0.13 11.37 -16.91 -0.19 -0.06 16 12 N -0.41 -4.66 3.16 -120.24 -0.38 -5.04 16 13 C 0.07 0.60 10.44 59.85 0.62 1.23 16 14 N -0.62 -7.33 2.24 -173.94 -0.39 -7.72 16 15 C 0.08 0.72 9.30 59.85 0.56 1.28 16 16 C 0.53 8.66 7.40 -10.98 -0.08 8.58 16 17 O -0.52 -10.13 15.19 5.56 0.08 -10.04 16 18 C -0.12 -2.24 4.71 36.01 0.17 -2.07 16 19 S -0.14 -3.44 18.55 -107.50 -1.99 -5.43 16 20 C -0.52 -14.64 10.04 30.94 0.31 -14.33 16 21 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 22 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 23 N -0.88 -26.21 13.97 55.49 0.78 -25.44 16 24 Si 0.86 21.40 27.74 -169.99 -4.72 16.68 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.68 6.88 -51.93 -0.36 0.33 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.41 5.11 6.78 -40.82 -0.28 4.83 16 34 H 0.15 1.86 7.45 -52.49 -0.39 1.47 16 35 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 36 H 0.17 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.45 8.13 -51.93 -0.42 0.03 16 39 H 0.10 0.96 6.62 -51.93 -0.34 0.62 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.76 6.44 -51.93 -0.33 0.43 16 42 H 0.07 0.55 6.53 -51.93 -0.34 0.21 16 43 H 0.10 1.66 7.40 -51.91 -0.38 1.28 16 44 H 0.10 1.69 8.11 -51.92 -0.42 1.27 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 385.53 15.07 5.81 5.81 Total: -1.00 -34.93 385.53 -7.70 -42.63 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.56 Total: 5.41 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -0.08 Total: 0.18 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.33 Total: -46.97 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.16 Total: -18.32 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.72 Total: 16.68 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.43 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.93 -7.70 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734746657.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.604 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds