Wall clock time and date at job start Sat Apr 11 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47319 * 2 1 4 4 C 1.53005 * 109.47251 * 239.99695 * 2 1 3 5 5 C 1.52996 * 109.47091 * 174.99974 * 4 2 1 6 6 C 1.53005 * 109.47090 * 180.02562 * 5 4 2 7 7 N 1.46496 * 109.47402 * 180.02562 * 6 5 4 8 8 C 1.34773 * 119.99974 * 180.02562 * 7 6 5 9 9 O 1.21691 * 120.00298 * 359.71666 * 8 7 6 10 10 C 1.46686 * 119.99873 * 179.97438 * 8 7 6 11 11 C 1.37866 * 126.23189 * 179.41389 * 10 8 7 12 12 C 1.39843 * 107.08554 * 179.88041 * 11 10 8 13 13 C 1.35452 * 107.86164 * 0.38132 * 12 11 10 14 14 N 1.35540 * 108.87490 * 359.76086 * 13 12 11 15 15 H 0.96999 * 125.68105 * 180.02562 * 14 13 12 16 16 N 1.46507 * 109.47374 * 120.00014 * 2 1 3 17 17 C 1.34776 * 119.99817 * 275.00395 * 16 2 1 18 18 O 1.21281 * 119.99812 * 359.97438 * 17 16 2 19 19 C 1.50700 * 119.99948 * 179.97438 * 17 16 2 20 20 S 1.81000 * 109.47092 * 179.97438 * 19 17 16 21 21 C 1.76202 * 99.99664 * 180.02562 * 20 19 17 22 22 H 1.07991 * 120.00215 * 0.02562 * 21 20 19 23 23 C 1.38804 * 119.99677 * 179.97438 * 21 20 19 24 24 N 1.31629 * 120.00002 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00075 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.46809 * 59.99910 * 25 23 21 27 27 H 1.48491 * 109.47325 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47032 * 300.00582 * 25 23 21 29 29 H 1.09001 * 109.46898 * 300.00121 * 1 2 3 30 30 H 1.09004 * 109.47124 * 60.00058 * 1 2 3 31 31 H 1.09000 * 109.47319 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46321 * 55.00048 * 4 2 1 33 33 H 1.08993 * 109.47232 * 295.00252 * 4 2 1 34 34 H 1.08994 * 109.47627 * 60.00501 * 5 4 2 35 35 H 1.09001 * 109.47155 * 299.99954 * 5 4 2 36 36 H 1.09007 * 109.47086 * 59.99722 * 6 5 4 37 37 H 1.09005 * 109.46517 * 300.00254 * 6 5 4 38 38 H 0.97004 * 120.00003 * 359.97438 * 7 6 5 39 39 H 1.07996 * 126.46184 * 0.02562 * 11 10 8 40 40 H 1.07994 * 126.07229 * 180.14477 * 12 11 10 41 41 H 1.08005 * 125.56526 * 179.75828 * 13 12 11 42 42 H 0.96995 * 120.00039 * 94.99284 * 16 2 1 43 43 H 1.08997 * 109.46917 * 299.99917 * 19 17 16 44 44 H 1.09008 * 109.46746 * 59.99693 * 19 17 16 45 45 H 0.97002 * 120.00198 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 6 4.0748 -1.3341 -2.5632 7 7 5.5348 -1.2313 -2.6246 8 6 6.2077 -1.7957 -3.6469 9 8 5.6029 -2.3952 -4.5162 10 6 7.6696 -1.6923 -3.7087 11 6 8.4839 -2.2275 -4.6840 12 6 9.7994 -1.8875 -4.3530 13 6 9.7670 -1.1738 -3.2022 14 7 8.4787 -1.0481 -2.8003 15 1 8.1771 -0.5815 -2.0052 16 7 2.0184 -0.6906 1.1962 17 6 2.1470 -0.0183 2.3572 18 8 1.8589 1.1586 2.4115 19 6 2.6489 -0.7288 3.5878 20 16 2.7105 0.4345 4.9731 21 6 3.3137 -0.6308 6.2404 22 1 3.5230 -1.6671 6.0204 23 6 3.5208 -0.1376 7.5212 24 7 3.2661 1.1257 7.7892 25 14 4.1595 -1.2671 8.8650 26 1 5.4853 -1.8064 8.4695 27 1 4.2930 -0.5034 10.1315 28 1 3.2074 -2.3895 9.0623 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6053 -0.2618 -2.1369 33 1 1.7516 -1.7715 -1.2056 34 1 3.9995 -1.0728 -0.4260 35 1 3.8531 0.4369 -1.3574 36 1 3.6401 -0.8743 -3.4508 37 1 3.7863 -2.3844 -2.5199 38 1 6.0173 -0.7563 -1.9299 39 1 8.1657 -2.7993 -5.5431 40 1 10.6843 -2.1508 -4.9132 41 1 10.6274 -0.7707 -2.6886 42 1 2.2490 -1.6318 1.1527 43 1 1.9760 -1.5506 3.8326 44 1 3.6481 -1.1213 3.3985 45 1 3.4104 1.4703 8.6844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735021850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:01 Heat of formation + Delta-G solvation = -47.785134 kcal Electronic energy + Delta-G solvation = -25409.841863 eV Core-core repulsion = 21553.612830 eV Total energy + Delta-G solvation = -3856.229034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.63632 -39.64004 -39.32792 -36.87827 -35.27611 -32.69183 -32.46819 -31.50087 -30.94902 -29.58284 -28.55016 -26.44363 -25.52164 -23.23705 -22.18845 -21.45479 -20.88776 -20.42994 -20.35758 -19.25026 -17.88994 -16.66797 -16.51962 -16.20369 -16.04612 -15.70944 -15.07399 -14.94164 -14.84128 -14.35885 -14.21506 -14.03111 -13.88814 -13.79444 -13.39611 -13.19180 -12.99419 -12.76387 -12.68017 -12.59573 -12.38765 -11.98559 -11.89644 -11.47140 -11.26404 -11.08870 -11.07677 -10.95379 -10.80019 -10.46539 -9.86414 -9.57165 -9.42353 -9.42033 -9.10531 -8.94076 -8.64189 -8.28750 -6.54701 -6.25734 -3.96660 1.08055 2.36274 2.63694 2.74264 2.99767 3.04814 3.05412 3.19848 3.24364 3.27953 3.68160 4.16564 4.25796 4.43135 4.57456 4.66319 4.68949 4.90569 4.95576 5.05985 5.08904 5.09340 5.16241 5.20408 5.33126 5.39947 5.49016 5.56125 5.65977 5.66605 5.70926 5.77044 5.81597 5.83497 5.95768 6.02020 6.08707 6.18285 6.28381 6.50175 6.64289 6.89342 7.08442 7.55031 7.67922 7.77151 8.30738 8.58130 9.19467 10.81550 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009644 B = 0.002083 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.569778 B =13438.369285 C =15788.791785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.088 0.912 4 C -0.121 4.121 5 C -0.134 4.134 6 C 0.120 3.880 7 N -0.732 5.732 8 C 0.589 3.411 9 O -0.530 6.530 10 C -0.061 4.061 11 C -0.105 4.105 12 C -0.214 4.214 13 C 0.026 3.974 14 N -0.540 5.540 15 H 0.417 0.583 16 N -0.734 5.734 17 C 0.532 3.468 18 O -0.518 6.518 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.396 0.604 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.172 0.828 42 H 0.396 0.604 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.311 -5.709 -23.672 25.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.106 0.894 4 C -0.160 4.160 5 C -0.172 4.172 6 C -0.003 4.003 7 N -0.383 5.383 8 C 0.377 3.623 9 O -0.406 6.406 10 C -0.174 4.174 11 C -0.132 4.132 12 C -0.238 4.238 13 C -0.110 4.110 14 N -0.137 5.137 15 H 0.254 0.746 16 N -0.389 5.389 17 C 0.318 3.682 18 O -0.392 6.392 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.229 0.771 39 H 0.165 0.835 40 H 0.162 0.838 41 H 0.190 0.810 42 H 0.230 0.770 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.250 -3.949 -23.953 25.068 hybrid contribution 1.036 -2.079 1.604 2.823 sum 7.287 -6.028 -22.349 24.267 Atomic orbital electron populations 1.22183 0.95328 1.02077 1.02694 1.20883 0.94033 0.97616 0.83659 0.89398 1.21792 0.94424 1.01722 0.98056 1.21837 0.96573 1.01452 0.97337 1.21439 0.78672 1.01401 0.98768 1.45917 1.08482 1.57397 1.26541 1.17074 0.84919 0.78708 0.81635 1.90849 1.68499 1.42479 1.38801 1.20438 0.90549 1.09565 0.96809 1.21357 0.92052 1.01074 0.98735 1.20944 0.97621 1.06189 0.99034 1.22112 0.86369 1.03996 0.98573 1.42068 1.06782 1.42959 1.21842 0.74576 1.46134 1.69342 1.13825 1.09603 1.20297 0.76843 0.87230 0.83784 1.90699 1.48305 1.15799 1.84388 1.23540 1.03555 1.04886 0.98503 1.85392 1.86352 1.12792 0.98796 1.22823 1.51091 0.98129 0.96452 0.91014 1.24993 0.95088 0.95543 0.97946 1.70004 1.45407 1.13205 1.21642 0.86227 0.79297 0.80035 0.79967 1.19962 1.20784 1.19919 0.91637 0.91898 0.92558 0.90030 0.90918 0.90762 0.90926 0.91113 0.91094 0.77085 0.83469 0.83798 0.81034 0.76986 0.89289 0.89410 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.48 37.15 0.35 -1.31 16 2 C 0.14 1.45 2.57 -67.93 -0.17 1.28 16 3 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 4 C -0.12 -0.82 4.75 -26.73 -0.13 -0.95 16 5 C -0.13 -0.89 5.22 -26.73 -0.14 -1.03 16 6 C 0.12 0.89 5.67 -4.04 -0.02 0.87 16 7 N -0.73 -5.57 5.55 -61.61 -0.34 -5.92 16 8 C 0.59 6.15 7.79 -12.85 -0.10 6.05 16 9 O -0.53 -7.43 16.88 5.20 0.09 -7.34 16 10 C -0.06 -0.55 7.06 -81.98 -0.58 -1.13 16 11 C -0.11 -0.97 10.65 -39.12 -0.42 -1.38 16 12 C -0.21 -1.53 10.81 -39.98 -0.43 -1.96 16 13 C 0.03 0.15 11.89 -16.91 -0.20 -0.05 16 14 N -0.54 -3.29 5.99 -9.39 -0.06 -3.35 16 15 H 0.42 1.42 8.19 -40.82 -0.33 1.08 16 16 N -0.73 -8.71 4.53 -53.80 -0.24 -8.96 16 17 C 0.53 9.28 7.81 -10.99 -0.09 9.20 16 18 O -0.52 -11.18 15.52 5.56 0.09 -11.09 16 19 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 20 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 21 C -0.54 -15.01 9.50 30.94 0.29 -14.72 16 22 H 0.07 1.89 7.80 -52.49 -0.41 1.49 16 23 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16 25 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.53 7.75 -51.93 -0.40 0.13 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.40 2.09 7.60 -40.82 -0.31 1.78 16 39 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.17 0.44 8.06 -52.48 -0.42 0.02 16 42 H 0.40 3.65 8.60 -40.82 -0.35 3.30 16 43 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 44 H 0.09 1.55 8.14 -51.91 -0.42 1.12 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 399.44 15.07 6.02 6.02 Total: -1.00 -37.38 399.44 -9.29 -46.66 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.83 Total: 2.72 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.51 Total: -5.93 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.09 Total: -43.28 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.17 Total: -18.43 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.38 -9.29 -46.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735021850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.121 kcal (2) G-P(sol) polarization free energy of solvation -37.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds