Wall clock time and date at job start Sat Apr 11 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47452 * 2 1 4 4 C 1.47192 * 109.47858 * 239.99452 * 2 1 3 5 5 N 2.60801 * 109.47547 * 239.99558 * 2 1 3 6 6 C 1.50707 * 109.47065 * 119.99422 * 2 1 3 7 7 O 1.21276 * 119.99771 * 100.33150 * 6 2 1 8 8 N 1.34776 * 120.00043 * 280.33536 * 6 2 1 9 9 C 1.46924 * 120.63190 * 355.76551 * 8 6 2 10 10 C 1.53194 * 108.89817 * 233.51842 * 9 8 6 11 11 C 1.53079 * 109.28946 * 305.58143 * 10 9 8 12 12 N 1.46507 * 109.43656 * 181.23526 * 11 10 9 13 13 C 1.46503 * 119.99867 * 299.79264 * 12 11 10 14 14 C 1.34769 * 119.99881 * 119.79426 * 12 11 10 15 15 O 1.21284 * 120.00354 * 0.02562 * 14 12 11 16 16 C 1.50699 * 119.99965 * 179.97438 * 14 12 11 17 17 S 1.81006 * 109.47274 * 179.97438 * 16 14 12 18 18 C 1.76207 * 99.99778 * 180.02562 * 17 16 14 19 19 H 1.07993 * 120.00074 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99429 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00167 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99545 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47380 * 59.99744 * 22 20 18 24 24 H 1.48504 * 109.46872 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47220 * 299.99774 * 22 20 18 26 26 C 1.53031 * 109.66189 * 61.15275 * 11 10 9 27 27 C 1.46924 * 120.63103 * 175.74964 * 8 6 2 28 28 H 1.08997 * 109.47301 * 302.66579 * 1 2 3 29 29 H 1.08998 * 109.46778 * 62.66716 * 1 2 3 30 30 H 1.08996 * 109.47047 * 182.66348 * 1 2 3 31 31 H 1.09005 * 109.58604 * 353.37497 * 9 8 6 32 32 H 1.09001 * 109.58744 * 113.65318 * 9 8 6 33 33 H 1.09003 * 109.49498 * 65.38568 * 10 9 8 34 34 H 1.08990 * 109.50158 * 185.48234 * 10 9 8 35 35 H 1.08998 * 109.34275 * 301.12049 * 11 10 9 36 36 H 1.08993 * 109.46933 * 90.00424 * 13 12 11 37 37 H 1.08998 * 109.46908 * 210.00162 * 13 12 11 38 38 H 1.09005 * 109.47006 * 329.99724 * 13 12 11 39 39 H 1.09002 * 109.47668 * 300.00184 * 16 14 12 40 40 H 1.09004 * 109.46851 * 60.00275 * 16 14 12 41 41 H 0.96999 * 119.99646 * 180.02562 * 21 20 18 42 42 H 1.08999 * 109.49990 * 178.74650 * 26 11 10 43 43 H 1.08999 * 109.53084 * 58.66327 * 26 11 10 44 44 H 1.09003 * 109.58213 * 246.20129 * 27 8 6 45 45 H 1.08997 * 109.58542 * 6.47881 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0208 -0.6940 -1.2017 5 7 2.3995 -1.2296 -2.1293 6 6 2.0323 -0.7103 1.2306 7 8 2.4120 -1.8596 1.1548 8 7 2.0595 -0.0684 2.4153 9 6 1.6906 1.3509 2.5064 10 6 2.8244 2.1149 3.1975 11 6 3.1319 1.4546 4.5439 12 7 4.1958 2.2003 5.2209 13 6 5.5105 2.3374 4.5891 14 6 3.9651 2.7602 6.4249 15 8 2.8769 2.6464 6.9482 16 6 5.0596 3.5268 7.1216 17 16 4.4447 4.1518 8.7051 18 6 5.8858 4.9825 9.2865 19 1 6.7850 4.9866 8.6885 20 6 5.8655 5.6308 10.5137 21 7 4.7696 5.6254 11.2428 22 14 7.3934 6.5109 11.1304 23 1 7.7735 7.5760 10.1682 24 1 7.1137 7.1178 12.4566 25 1 8.5080 5.5377 11.2572 26 6 3.5859 0.0108 4.3176 27 6 2.4583 -0.7746 3.6404 28 1 -0.3634 0.5546 0.8651 29 1 -0.3633 0.4719 -0.9129 30 1 -0.3633 -1.0265 0.0478 31 1 1.5361 1.7533 1.5052 32 1 0.7738 1.4536 3.0869 33 1 3.7154 2.0895 2.5701 34 1 2.5212 3.1494 3.3578 35 1 2.2343 1.4605 5.1622 36 1 5.5247 3.2351 3.9711 37 1 6.2776 2.4145 5.3596 38 1 5.7072 1.4644 3.9667 39 1 5.9103 2.8680 7.2962 40 1 5.3708 4.3642 6.4971 41 1 4.7554 6.0788 12.1002 42 1 3.8254 -0.4498 5.2760 43 1 4.4692 0.0024 3.6791 44 1 1.6054 -0.8450 4.3156 45 1 2.8079 -1.7756 3.3878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735105444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:07 Heat of formation + Delta-G solvation = -37.913906 kcal Electronic energy + Delta-G solvation = -26740.007763 eV Core-core repulsion = 22884.206778 eV Total energy + Delta-G solvation = -3855.800985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08440 -39.75674 -37.84198 -36.90469 -35.40112 -34.05384 -32.46471 -32.15565 -31.46124 -29.06661 -27.08812 -26.16272 -25.54379 -24.74505 -23.83713 -21.71077 -20.00947 -19.28997 -18.14049 -17.90663 -17.68411 -16.83624 -16.25676 -15.95755 -15.71433 -15.48930 -14.83720 -14.74972 -14.67571 -14.32970 -14.06904 -14.00900 -13.58377 -13.32653 -13.27104 -13.20393 -13.06028 -12.89372 -12.75462 -12.58782 -12.42027 -12.35006 -12.15866 -12.05925 -11.95103 -11.64042 -11.18990 -11.08746 -11.06700 -10.90410 -10.77891 -10.27507 -9.85131 -9.48864 -9.16830 -9.09328 -8.62678 -8.27896 -6.54443 -6.25081 -3.96115 1.91358 2.01105 2.33717 2.64629 2.83570 2.95770 3.20750 3.22462 3.26365 3.29601 3.53707 3.82192 4.13397 4.17036 4.25964 4.35419 4.48474 4.56476 4.72399 4.81354 4.90783 4.92131 4.95806 5.01583 5.05258 5.09937 5.11397 5.30819 5.34444 5.41399 5.43037 5.46473 5.53428 5.56645 5.67656 5.71645 5.84876 5.98406 6.03913 6.08273 6.56040 6.75966 7.09214 7.43690 7.54355 7.55862 8.31386 8.46819 9.20228 10.82226 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033602 B = 0.001951 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.075886 B =14349.084089 C =14517.444956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.014 4.014 3 H 0.138 0.862 4 C 0.220 3.780 5 N -0.411 5.411 6 C 0.526 3.474 7 O -0.528 6.528 8 N -0.605 5.605 9 C 0.103 3.897 10 C -0.145 4.145 11 C 0.141 3.859 12 N -0.620 5.620 13 C 0.078 3.922 14 C 0.535 3.465 15 O -0.516 6.516 16 C -0.150 4.150 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.144 4.144 27 C 0.115 3.885 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.610 -8.002 -21.183 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.038 4.038 3 H 0.155 0.845 4 C -0.100 4.100 5 N -0.086 5.086 6 C 0.312 3.688 7 O -0.404 6.404 8 N -0.338 5.338 9 C -0.020 4.020 10 C -0.184 4.184 11 C 0.037 3.963 12 N -0.356 5.356 13 C -0.065 4.065 14 C 0.323 3.677 15 O -0.390 6.390 16 C -0.301 4.301 17 S 0.165 5.835 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.183 4.183 27 C -0.007 4.007 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.522 -9.534 -21.656 24.828 hybrid contribution 2.341 1.081 0.183 2.585 sum -5.181 -8.453 -21.473 23.651 Atomic orbital electron populations 1.21794 0.89040 1.04644 1.04646 1.18905 0.99260 1.00000 0.85669 0.84488 1.28104 0.93963 0.93902 0.94015 1.81219 1.07672 1.07763 1.11911 1.19949 0.78327 0.86748 0.83819 1.90783 1.47049 1.17539 1.85001 1.48080 1.66837 1.11527 1.07405 1.21936 0.98383 0.79424 1.02217 1.22315 0.98996 1.00407 0.96707 1.20960 0.92417 0.89803 0.93155 1.47896 1.12857 1.54992 1.19806 1.21751 0.84491 1.01471 0.98811 1.20370 0.89250 0.78187 0.79874 1.90687 1.25288 1.58802 1.64235 1.23560 1.00085 1.01926 1.04507 1.85382 1.19335 1.67277 1.11469 1.22811 0.98882 1.39323 1.07430 0.91001 1.24986 0.97116 0.95838 0.95588 1.70001 1.26741 1.41146 1.12343 0.86232 0.81762 0.79536 0.78022 1.19933 1.20794 1.19940 1.22295 0.98677 0.95492 1.01805 1.21659 0.97682 0.96912 0.84447 0.89585 0.90043 0.90796 0.89056 0.89881 0.90973 0.89527 0.87632 0.92734 0.90591 0.91382 0.89258 0.89270 0.92105 0.89752 0.91049 0.90471 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.36 9.01 37.16 0.33 -0.03 16 2 C -0.01 -0.07 2.25 -94.56 -0.21 -0.28 16 3 H 0.14 0.18 6.37 -51.93 -0.33 -0.15 16 4 C 0.22 1.92 13.97 -20.76 -0.29 1.63 16 5 N -0.41 -4.89 18.54 42.16 0.78 -4.10 16 6 C 0.53 4.05 6.84 -10.98 -0.08 3.98 16 7 O -0.53 -6.48 15.58 5.56 0.09 -6.39 16 8 N -0.60 -3.75 2.97 -172.77 -0.51 -4.26 16 9 C 0.10 0.41 5.70 -3.71 -0.02 0.39 16 10 C -0.15 -0.90 5.36 -26.59 -0.14 -1.05 16 11 C 0.14 1.33 2.48 -67.87 -0.17 1.16 16 12 N -0.62 -7.44 2.76 -173.86 -0.48 -7.92 16 13 C 0.08 0.71 9.33 59.85 0.56 1.26 16 14 C 0.54 9.23 7.69 -10.99 -0.08 9.15 16 15 O -0.52 -10.79 15.19 5.55 0.08 -10.70 16 16 C -0.15 -2.87 4.71 36.00 0.17 -2.70 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 18 C -0.54 -14.87 9.50 30.94 0.29 -14.58 16 19 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.61 13.22 55.49 0.73 -24.87 16 22 Si 0.92 20.94 29.55 -169.99 -5.02 15.91 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 C -0.14 -1.16 5.31 -26.62 -0.14 -1.30 16 27 C 0.12 0.84 6.44 -3.71 -0.02 0.82 16 28 H 0.09 0.07 7.43 -51.93 -0.39 -0.31 16 29 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.10 5.30 -51.93 -0.28 -0.18 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.42 7.72 -51.93 -0.40 0.02 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.11 1.22 6.90 -51.93 -0.36 0.86 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.73 6.44 -51.93 -0.33 0.39 16 38 H 0.07 0.49 6.46 -51.93 -0.34 0.15 16 39 H 0.09 1.59 7.40 -51.92 -0.38 1.21 16 40 H 0.09 1.58 8.11 -51.91 -0.42 1.16 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.56 6.72 -51.93 -0.35 0.21 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.83 7.00 -51.93 -0.36 0.47 16 LS Contribution 382.73 15.07 5.77 5.77 Total: -1.00 -37.80 382.73 -7.12 -44.91 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -6.44 Total: -4.94 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 0.10 Total: 0.42 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.52 Total: -41.16 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: 0.17 Total: -17.09 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.80 -7.12 -44.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735105444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.999 kcal (2) G-P(sol) polarization free energy of solvation -37.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds