Wall clock time and date at job start Sat Apr 11 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47304 * 2 1 4 4 C 1.52996 * 109.46889 * 120.00163 * 2 1 3 5 5 N 1.46506 * 109.47024 * 174.99841 * 4 2 1 6 6 C 1.46495 * 120.00090 * 89.99669 * 5 4 2 7 7 C 1.34777 * 119.99935 * 269.99856 * 5 4 2 8 8 O 1.21629 * 119.99622 * 5.99854 * 7 5 4 9 9 C 1.47262 * 120.00048 * 186.00207 * 7 5 4 10 10 C 1.46688 * 126.94276 * 7.91587 * 9 7 5 11 11 C 1.34480 * 106.33258 * 179.97438 * 10 9 7 12 12 N 1.36447 * 108.85535 * 0.02562 * 11 10 9 13 13 C 1.46504 * 124.84623 * 179.97438 * 12 11 10 14 14 C 1.34650 * 110.30013 * 359.74500 * 12 11 10 15 15 N 1.46508 * 109.46733 * 239.99674 * 2 1 3 16 16 C 1.34771 * 119.99658 * 85.00609 * 15 2 1 17 17 O 1.21286 * 120.00335 * 359.97438 * 16 15 2 18 18 C 1.50700 * 119.99761 * 180.27559 * 16 15 2 19 19 S 1.81005 * 109.47033 * 179.72401 * 18 16 15 20 20 C 1.76197 * 99.99963 * 179.97438 * 19 18 16 21 21 H 1.08007 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00101 * 179.97438 * 20 19 18 23 23 N 1.31626 * 120.00172 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99944 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47213 * 90.00661 * 24 22 20 26 26 H 1.48501 * 109.47154 * 210.00214 * 24 22 20 27 27 H 1.48498 * 109.47149 * 330.00254 * 24 22 20 28 28 H 1.08998 * 109.47304 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46737 * 300.00157 * 1 2 3 30 30 H 1.09001 * 109.47107 * 60.00047 * 1 2 3 31 31 H 1.09000 * 109.47295 * 294.99353 * 4 2 1 32 32 H 1.08999 * 109.47849 * 54.99609 * 4 2 1 33 33 H 1.09003 * 109.47153 * 95.86474 * 6 5 4 34 34 H 1.09000 * 109.47386 * 215.86680 * 6 5 4 35 35 H 1.09001 * 109.47140 * 335.87285 * 6 5 4 36 36 H 1.08005 * 126.82987 * 359.95598 * 10 9 7 37 37 H 1.08003 * 125.56988 * 180.02562 * 11 10 9 38 38 H 1.08998 * 109.47350 * 90.02094 * 13 12 11 39 39 H 1.09007 * 109.46609 * 210.01875 * 13 12 11 40 40 H 1.09001 * 109.47360 * 330.01657 * 13 12 11 41 41 H 1.08008 * 125.80497 * 180.30011 * 14 12 11 42 42 H 0.96998 * 119.99556 * 265.00204 * 15 2 1 43 43 H 1.08999 * 109.46832 * 299.71528 * 18 16 15 44 44 H 1.08995 * 109.47096 * 59.72085 * 18 16 15 45 45 H 0.97001 * 120.00128 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.3344 0.2339 1.7612 7 6 4.0757 -1.8988 0.6115 8 8 3.3881 -2.7247 0.0420 9 6 5.5372 -2.0705 0.6685 10 6 6.4897 -1.2671 1.4425 11 6 7.7075 -1.7801 1.1929 12 7 7.5758 -2.8291 0.3304 13 6 8.6853 -3.6413 -0.1754 14 6 6.2801 -3.0144 0.0145 15 7 2.0183 -0.6907 -1.1962 16 6 2.1471 -0.0184 -2.3571 17 8 1.8583 1.1583 -2.4117 18 6 2.6434 -0.7304 -3.5891 19 16 2.6982 0.4311 -4.9763 20 6 3.2957 -0.6355 -6.2450 21 1 3.5065 -1.6716 -6.0246 22 6 3.4957 -0.1443 -7.5277 23 7 3.2393 1.1186 -7.7962 24 14 4.1299 -1.2750 -8.8725 25 1 2.9817 -1.9141 -9.5643 26 1 4.9201 -0.4856 -9.8511 27 1 4.9920 -2.3241 -8.2715 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7517 -0.1583 2.1369 32 1 1.6053 -1.7198 1.2952 33 1 4.6288 -0.0409 2.7741 34 1 5.2251 0.3656 1.1469 35 1 3.7699 1.1660 1.7872 36 1 6.2589 -0.4301 2.0848 37 1 8.6377 -1.4205 1.6075 38 1 8.8538 -4.4841 0.4950 39 1 8.4398 -4.0121 -1.1706 40 1 9.5876 -3.0320 -0.2270 41 1 5.8932 -3.7776 -0.6445 42 1 2.2489 -1.6319 -1.1526 43 1 3.6434 -1.1225 -3.4040 44 1 1.9695 -1.5525 -3.8299 45 1 3.3794 1.4620 -8.6925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735182441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:15 Heat of formation + Delta-G solvation = -5.419291 kcal Electronic energy + Delta-G solvation = -27314.979379 eV Core-core repulsion = 23460.587467 eV Total energy + Delta-G solvation = -3854.391913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51262 -39.90464 -38.64035 -36.15131 -34.68132 -32.94390 -32.35534 -31.25321 -29.44175 -28.47017 -28.03583 -26.86987 -25.80014 -25.40053 -22.39327 -21.33934 -20.57142 -19.93764 -19.27391 -17.79666 -17.44916 -16.55462 -16.31766 -16.09065 -15.80313 -15.56797 -14.78928 -14.73772 -14.63783 -14.32867 -14.00069 -13.83340 -13.39116 -13.33499 -13.07750 -13.05630 -12.89057 -12.65081 -12.53167 -12.41941 -12.41163 -12.06960 -11.85255 -11.70318 -11.45128 -11.03971 -11.00135 -10.93986 -10.69707 -9.93170 -9.72732 -9.17739 -8.99775 -8.85871 -8.82673 -8.58480 -8.43774 -8.12352 -6.39622 -6.14325 -3.83135 1.62864 2.20811 2.54590 2.97840 3.19914 3.26356 3.32427 3.33210 3.42045 3.47650 3.96053 4.28136 4.40784 4.60705 4.73044 4.76626 4.80350 4.82774 4.98807 5.04207 5.16390 5.20467 5.21718 5.25689 5.33164 5.35863 5.44240 5.54608 5.62622 5.69708 5.72281 5.78415 5.86767 6.07422 6.14036 6.24698 6.33492 6.42973 6.52891 6.80395 6.96787 6.99429 7.33267 7.67223 8.04305 8.26301 8.43252 8.89481 9.30928 10.93210 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008877 B = 0.003583 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.392703 B = 7812.799029 C =10224.718022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 H 0.085 0.915 4 C 0.109 3.891 5 N -0.609 5.609 6 C 0.071 3.929 7 C 0.599 3.401 8 O -0.554 6.554 9 C -0.235 4.235 10 C -0.182 4.182 11 C -0.020 4.020 12 N -0.446 5.446 13 C 0.067 3.933 14 C 0.080 3.920 15 N -0.728 5.728 16 C 0.532 3.468 17 O -0.527 6.527 18 C -0.149 4.149 19 S -0.061 6.061 20 C -0.533 4.533 21 H 0.071 0.929 22 C 0.073 3.927 23 N -0.869 5.869 24 Si 0.917 3.083 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.273 1.273 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.175 0.825 42 H 0.408 0.592 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.328 -7.739 24.725 27.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.020 3.980 3 H 0.103 0.897 4 C -0.014 4.014 5 N -0.340 5.340 6 C -0.072 4.072 7 C 0.391 3.609 8 O -0.434 6.434 9 C -0.245 4.245 10 C -0.205 4.205 11 C -0.147 4.147 12 N -0.121 5.121 13 C -0.074 4.074 14 C -0.056 4.056 15 N -0.388 5.388 16 C 0.318 3.682 17 O -0.403 6.403 18 C -0.300 4.300 19 S 0.165 5.835 20 C -0.681 4.681 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.198 1.198 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.177 0.823 37 H 0.183 0.817 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.192 0.808 42 H 0.249 0.751 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.806 -6.263 24.123 26.117 hybrid contribution 0.957 -2.407 -0.779 2.705 sum 8.763 -8.671 23.344 26.399 Atomic orbital electron populations 1.22134 0.95000 1.02223 1.02711 1.21275 0.94138 0.97766 0.84793 0.89653 1.21866 0.79603 1.02486 0.97449 1.47494 1.06314 1.21295 1.58937 1.22341 0.96441 0.90151 0.98251 1.17394 0.86486 0.80170 0.76878 1.90636 1.64412 1.44042 1.44266 1.20208 0.92458 1.02960 1.08827 1.22704 0.91325 1.02264 1.04217 1.21840 0.99965 0.93238 0.99620 1.43659 1.06668 1.25755 1.36067 1.22154 0.88714 0.95667 1.00899 1.21831 0.82270 1.00495 1.00961 1.46392 1.68434 1.15182 1.08783 1.20251 0.76807 0.87142 0.84006 1.90660 1.49029 1.15858 1.84743 1.23494 1.03572 1.04593 0.98356 1.85296 1.86469 1.13155 0.98551 1.22891 1.50711 0.98211 0.96281 0.91040 1.24971 0.95213 0.95495 0.97882 1.70025 1.45899 1.13231 1.21289 0.86192 0.78834 0.79998 0.80614 1.20275 1.20805 1.19769 0.92392 0.91941 0.91381 0.89159 0.89380 0.92408 0.89548 0.91181 0.82343 0.81692 0.90658 0.89352 0.89491 0.80764 0.75113 0.89645 0.89482 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.48 37.16 0.35 -1.60 16 2 C 0.13 1.70 2.88 -67.93 -0.20 1.51 16 3 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 4 C 0.11 1.14 5.11 -4.04 -0.02 1.11 16 5 N -0.61 -6.85 2.77 -182.91 -0.51 -7.36 16 6 C 0.07 0.59 8.65 59.84 0.52 1.10 16 7 C 0.60 8.16 7.08 -12.59 -0.09 8.07 16 8 O -0.55 -8.86 13.93 5.25 0.07 -8.78 16 9 C -0.23 -2.84 6.04 -103.35 -0.62 -3.47 16 10 C -0.18 -1.70 8.84 -37.50 -0.33 -2.03 16 11 C -0.02 -0.17 11.34 -16.83 -0.19 -0.36 16 12 N -0.45 -3.85 3.09 -124.52 -0.38 -4.23 16 13 C 0.07 0.33 11.03 59.85 0.66 0.99 16 14 C 0.08 0.89 11.13 -16.85 -0.19 0.70 16 15 N -0.73 -12.26 4.48 -53.80 -0.24 -12.50 16 16 C 0.53 11.30 7.81 -10.99 -0.09 11.21 16 17 O -0.53 -12.81 15.53 5.55 0.09 -12.73 16 18 C -0.15 -3.43 6.16 36.01 0.22 -3.20 16 19 S -0.06 -1.76 20.57 -107.50 -2.21 -3.97 16 20 C -0.53 -15.87 9.50 30.94 0.29 -15.57 16 21 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16 22 C 0.07 2.16 5.49 -17.43 -0.10 2.06 16 23 N -0.87 -26.91 13.22 55.49 0.73 -26.17 16 24 Si 0.92 22.04 29.55 -169.99 -5.02 17.02 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.09 0.96 7.51 -51.93 -0.39 0.57 16 33 H 0.06 0.35 7.32 -51.93 -0.38 -0.03 16 34 H 0.09 0.77 5.36 -51.93 -0.28 0.50 16 35 H 0.07 0.51 8.03 -51.93 -0.42 0.10 16 36 H 0.16 1.12 4.82 -52.48 -0.25 0.87 16 37 H 0.17 0.84 8.06 -52.48 -0.42 0.41 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.09 0.40 8.13 -51.93 -0.42 -0.03 16 40 H 0.09 0.29 8.13 -51.93 -0.42 -0.13 16 41 H 0.18 1.79 8.06 -52.48 -0.42 1.36 16 42 H 0.41 6.84 5.56 -40.82 -0.23 6.62 16 43 H 0.09 1.89 8.14 -51.92 -0.42 1.47 16 44 H 0.09 1.90 8.14 -51.92 -0.42 1.47 16 45 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -38.68 386.61 -7.95 -46.63 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.53 Total: 5.75 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 0.23 Total: 0.52 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.40 Total: -50.26 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: 0.16 Total: -21.51 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.97 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.68 -7.95 -46.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735182441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.212 kcal (2) G-P(sol) polarization free energy of solvation -38.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds