Wall clock time and date at job start Sat Apr 11 2020 05:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46810 * 2 1 4 4 C 1.47202 * 109.47141 * 239.99839 * 2 1 3 5 5 N 2.60798 * 109.47074 * 239.99997 * 2 1 3 6 6 C 1.50695 * 109.47041 * 120.00220 * 2 1 3 7 7 O 1.21281 * 120.00326 * 86.63304 * 6 2 1 8 8 N 1.34781 * 119.99777 * 266.63327 * 6 2 1 9 9 C 1.46502 * 119.99909 * 185.18958 * 8 6 2 10 10 C 1.52999 * 109.47038 * 175.73685 * 9 8 6 11 11 C 1.53000 * 115.55086 * 279.60392 * 10 9 8 12 12 C 1.53001 * 109.47062 * 295.01422 * 11 10 9 13 13 N 1.46504 * 109.47138 * 184.01486 * 12 11 10 14 14 C 1.34780 * 119.99743 * 183.94143 * 13 12 11 15 15 O 1.21272 * 120.00093 * 4.53241 * 14 13 12 16 16 C 1.50702 * 119.99341 * 184.52818 * 14 13 12 17 17 S 1.81009 * 109.46554 * 180.02562 * 16 14 13 18 18 C 1.76203 * 99.99655 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00010 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99655 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00012 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99720 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46854 * 59.99920 * 22 20 18 24 24 H 1.48497 * 109.46979 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47137 * 299.99835 * 22 20 18 26 26 C 1.52996 * 117.50106 * 133.89756 * 10 9 8 27 27 C 1.52997 * 60.00151 * 252.50947 * 26 10 9 28 28 H 1.09001 * 109.47273 * 177.91829 * 1 2 3 29 29 H 1.09005 * 109.46970 * 57.92263 * 1 2 3 30 30 H 1.09000 * 109.47335 * 297.92654 * 1 2 3 31 31 H 0.96999 * 120.00188 * 5.19147 * 8 6 2 32 32 H 1.09001 * 109.47331 * 295.73555 * 9 8 6 33 33 H 1.08999 * 109.46764 * 55.73652 * 9 8 6 34 34 H 1.09005 * 109.47079 * 55.01129 * 11 10 9 35 35 H 1.09001 * 109.47579 * 175.01219 * 11 10 9 36 36 H 1.09001 * 109.47252 * 304.01734 * 12 11 10 37 37 H 1.08999 * 109.47059 * 64.01893 * 12 11 10 38 38 H 0.96995 * 119.99865 * 3.95120 * 13 12 11 39 39 H 1.09002 * 109.47255 * 299.99936 * 16 14 13 40 40 H 1.09000 * 109.47440 * 60.00321 * 16 14 13 41 41 H 0.97002 * 119.99911 * 180.02562 * 21 20 18 42 42 H 1.09005 * 117.49674 * 359.97438 * 26 10 9 43 43 H 1.08992 * 117.50301 * 145.02162 * 26 10 9 44 44 H 1.08996 * 117.50066 * 252.51070 * 27 26 10 45 45 H 1.08997 * 117.50409 * 107.48610 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6940 -1.2019 5 7 2.3993 -1.2294 -2.1294 6 6 2.0323 -0.7104 1.2304 7 8 2.1763 -1.9146 1.2191 8 7 2.3216 -0.0076 2.3435 9 6 2.9165 -0.6806 3.5008 10 6 3.2408 0.3534 4.5809 11 6 4.5375 1.1388 4.3745 12 6 5.7307 0.1850 4.4614 13 7 6.9759 0.9502 4.3596 14 6 8.1608 0.3084 4.3318 15 8 8.1935 -0.9036 4.3079 16 6 9.4449 1.0972 4.3301 17 16 10.8519 -0.0409 4.2890 18 6 12.1812 1.1157 4.2948 19 1 11.9747 2.1755 4.3182 20 6 13.4936 0.6646 4.2681 21 7 13.7451 -0.6270 4.2391 22 14 14.9028 1.8908 4.2735 23 1 14.8331 2.7196 5.5038 24 1 16.1950 1.1598 4.2422 25 1 14.8005 2.7677 3.0794 26 6 2.8353 0.0238 6.0189 27 6 2.0665 1.0871 5.2318 28 1 -0.3634 -1.0270 -0.0373 29 1 -0.3633 0.5458 -0.8708 30 1 -0.3634 0.4813 0.9080 31 1 2.1358 0.9438 2.3783 32 1 2.2123 -1.4118 3.8976 33 1 3.8324 -1.1866 3.1955 34 1 4.5226 1.6135 3.3934 35 1 4.6263 1.9030 5.1467 36 1 5.7054 -0.3427 5.4148 37 1 5.6797 -0.5360 3.6455 38 1 6.9476 1.9186 4.3124 39 1 9.4741 1.7422 3.4519 40 1 9.4974 1.7080 5.2314 41 1 14.6623 -0.9423 4.2208 42 1 2.3370 -0.9295 6.1953 43 1 3.4923 0.3664 6.8182 44 1 2.2179 2.1291 5.5133 45 1 1.0630 0.8332 4.8905 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739301794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:18 Heat of formation + Delta-G solvation = -34.387016 kcal Electronic energy + Delta-G solvation = -25542.773250 eV Core-core repulsion = 21687.125203 eV Total energy + Delta-G solvation = -3855.648048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.67006 -39.42983 -38.67242 -36.96340 -34.88636 -34.57681 -33.64414 -32.42796 -30.99277 -28.74652 -27.61834 -25.55387 -25.47218 -23.74622 -22.78624 -21.44347 -20.56129 -19.83469 -18.36842 -17.80311 -17.74847 -16.44907 -16.32613 -16.00240 -15.87465 -15.59854 -15.34381 -14.81519 -14.78615 -14.61283 -14.26690 -14.01166 -13.78557 -13.56789 -13.23886 -13.18566 -12.92643 -12.83326 -12.59421 -12.44801 -12.36299 -12.22237 -12.06545 -11.96976 -11.81685 -11.46036 -11.04648 -11.03921 -10.78550 -10.74151 -10.58320 -10.17868 -9.82410 -9.59165 -9.40793 -9.06350 -8.89064 -8.23704 -6.49987 -6.21217 -3.92079 1.87136 2.11953 2.38033 2.73566 3.00552 3.09530 3.23321 3.24428 3.28332 3.32581 3.38883 3.69327 4.06298 4.13096 4.19795 4.20592 4.27132 4.34469 4.41475 4.44050 4.88568 4.90347 4.98382 5.01764 5.13656 5.16422 5.17754 5.19135 5.24262 5.39404 5.41112 5.45717 5.58288 5.63838 5.66409 5.79985 5.85513 5.89794 5.93926 6.12687 6.59998 6.87333 7.13217 7.59103 7.62137 7.68704 8.35005 8.60834 9.23693 10.86125 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013357 B = 0.001943 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.842600 B =14410.319408 C =15772.711881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.008 4.008 3 H 0.135 0.865 4 C 0.214 3.786 5 N -0.405 5.405 6 C 0.521 3.479 7 O -0.521 6.521 8 N -0.719 5.719 9 C 0.153 3.847 10 C -0.142 4.142 11 C -0.092 4.092 12 C 0.121 3.879 13 N -0.741 5.741 14 C 0.531 3.469 15 O -0.515 6.515 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.158 4.158 27 C -0.167 4.167 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.404 0.596 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.397 0.603 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.996 10.233 0.077 33.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.033 4.033 3 H 0.152 0.848 4 C -0.105 4.105 5 N -0.080 5.080 6 C 0.304 3.696 7 O -0.396 6.396 8 N -0.371 5.371 9 C 0.030 3.970 10 C -0.143 4.143 11 C -0.130 4.130 12 C -0.003 4.003 13 N -0.396 5.396 14 C 0.317 3.683 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.195 4.195 27 C -0.205 4.205 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.239 0.761 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.231 0.769 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -31.086 6.332 -1.365 31.754 hybrid contribution 0.715 3.363 0.450 3.468 sum -30.371 9.695 -0.916 31.894 Atomic orbital electron populations 1.21757 0.89200 1.04583 1.04356 1.18788 0.99072 0.99800 0.85656 0.84783 1.28094 0.94175 0.94104 0.94146 1.81250 1.07405 1.07618 1.11761 1.19993 0.78026 0.87693 0.83886 1.90820 1.51348 1.14032 1.83396 1.45886 1.63992 1.12909 1.14350 1.20955 0.99042 0.93217 0.83803 1.21546 0.96342 1.01490 0.94925 1.21307 0.91345 0.97391 1.02925 1.21244 0.82265 0.94331 1.02461 1.45983 1.05588 1.10137 1.77879 1.20315 0.84440 0.88410 0.75167 1.90711 1.87027 1.13996 1.47198 1.23533 0.97736 1.04277 1.04858 1.85433 0.92874 1.08403 1.96662 1.22823 0.92360 0.94197 1.59088 0.90985 1.24999 0.98267 0.95807 0.94548 1.70007 1.20768 1.12791 1.46666 0.86222 0.80146 0.80336 0.78772 1.19945 1.20808 1.19945 1.23078 1.02984 1.00479 0.92966 1.23067 0.95722 0.98043 1.03619 0.90775 0.90131 0.89896 0.76091 0.90857 0.89907 0.90683 0.90675 0.91626 0.91391 0.76940 0.89313 0.89212 0.92111 0.88209 0.87963 0.88272 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.29 9.13 37.16 0.34 0.05 16 2 C -0.01 -0.04 3.09 -94.56 -0.29 -0.33 16 3 H 0.13 0.04 8.14 -51.93 -0.42 -0.38 16 4 C 0.21 1.98 14.12 -20.76 -0.29 1.68 16 5 N -0.41 -5.20 18.54 42.15 0.78 -4.42 16 6 C 0.52 3.77 6.82 -10.99 -0.07 3.70 16 7 O -0.52 -6.58 16.42 5.56 0.09 -6.49 16 8 N -0.72 -3.30 5.51 -60.29 -0.33 -3.63 16 9 C 0.15 0.98 5.54 -4.04 -0.02 0.96 16 10 C -0.14 -0.68 1.53 -154.51 -0.24 -0.92 16 11 C -0.09 -0.53 5.22 -26.73 -0.14 -0.67 16 12 C 0.12 1.26 5.47 -4.04 -0.02 1.23 16 13 N -0.74 -9.21 5.55 -60.29 -0.33 -9.54 16 14 C 0.53 9.78 7.84 -10.98 -0.09 9.70 16 15 O -0.52 -11.80 15.85 5.56 0.09 -11.71 16 16 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 22 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 26 C -0.16 -0.75 9.90 -26.73 -0.26 -1.01 16 27 C -0.17 -0.53 9.83 -26.73 -0.26 -0.79 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 30 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 31 H 0.40 0.52 8.41 -40.82 -0.34 0.17 16 32 H 0.07 0.50 7.94 -51.93 -0.41 0.09 16 33 H 0.08 0.75 6.68 -51.93 -0.35 0.40 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.84 6.89 -51.93 -0.36 0.48 16 38 H 0.40 3.62 8.48 -40.82 -0.35 3.28 16 39 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 41 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.10 0.47 8.08 -51.93 -0.42 0.05 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 406.43 15.07 6.12 6.12 Total: -1.00 -40.47 406.43 -7.86 -48.33 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -6.84 Total: -3.39 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -0.94 Total: -2.24 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.85 Total: -43.16 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.18 Total: -18.21 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -40.47 -7.86 -48.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739301794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.944 kcal (2) G-P(sol) polarization free energy of solvation -40.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds