Wall clock time and date at job start Sat Apr 11 2020 05:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47140 * 2 1 4 4 C 1.47195 * 109.47348 * 119.99971 * 2 1 3 5 5 N 2.60799 * 109.47166 * 120.00049 * 2 1 3 6 6 C 1.50705 * 109.47100 * 240.00125 * 2 1 3 7 7 O 1.21278 * 119.99653 * 240.00156 * 6 2 1 8 8 N 1.34773 * 120.00146 * 59.99781 * 6 2 1 9 9 C 1.46500 * 120.00472 * 180.02562 * 8 6 2 10 10 C 1.52994 * 109.47308 * 178.57483 * 9 8 6 11 11 C 1.52996 * 115.54947 * 279.24176 * 10 9 8 12 12 C 1.53008 * 109.47441 * 294.62819 * 11 10 9 13 13 N 1.46497 * 109.46904 * 185.16018 * 12 11 10 14 14 C 1.34781 * 119.99793 * 180.02562 * 13 12 11 15 15 O 1.21288 * 119.99700 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00199 * 180.02562 * 14 13 12 17 17 S 1.81000 * 109.47105 * 180.02562 * 16 14 13 18 18 C 1.76195 * 99.99998 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00207 * 359.97438 * 18 17 16 20 20 C 1.38802 * 120.00038 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99779 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00104 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46967 * 89.99710 * 22 20 18 24 24 H 1.48491 * 109.47347 * 209.99842 * 22 20 18 25 25 H 1.48502 * 109.47326 * 329.99995 * 22 20 18 26 26 C 1.53002 * 117.49931 * 133.53990 * 10 9 8 27 27 C 1.52995 * 117.50138 * 64.91708 * 10 9 8 28 28 H 1.09002 * 109.46604 * 299.99803 * 1 2 3 29 29 H 1.08993 * 109.47236 * 60.00082 * 1 2 3 30 30 H 1.08999 * 109.47140 * 179.97438 * 1 2 3 31 31 H 0.97011 * 119.99831 * 359.97438 * 8 6 2 32 32 H 1.09002 * 109.46602 * 298.57704 * 9 8 6 33 33 H 1.09000 * 109.46488 * 58.57070 * 9 8 6 34 34 H 1.09005 * 109.47460 * 54.62661 * 11 10 9 35 35 H 1.09003 * 109.47603 * 174.62652 * 11 10 9 36 36 H 1.08993 * 109.46707 * 305.16381 * 12 11 10 37 37 H 1.09001 * 109.46753 * 65.16202 * 12 11 10 38 38 H 0.96996 * 120.00775 * 0.02562 * 13 12 11 39 39 H 1.09002 * 109.46666 * 299.99699 * 16 14 13 40 40 H 1.08996 * 109.47066 * 59.99395 * 16 14 13 41 41 H 0.97005 * 119.99685 * 180.02562 * 21 20 18 42 42 H 1.09004 * 117.49550 * 359.97438 * 26 10 9 43 43 H 1.08996 * 117.49934 * 145.01954 * 26 10 9 44 44 H 1.09004 * 117.50010 * 214.97988 * 27 10 9 45 45 H 1.09004 * 117.49617 * 359.97253 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2294 2.1294 6 6 2.0324 -0.7104 -1.2305 7 8 2.7296 -1.6965 -1.1192 8 7 1.7068 -0.2500 -2.4546 9 6 2.1946 -0.9408 -3.6508 10 6 1.6556 -0.2405 -4.8997 11 6 0.2208 -0.6002 -5.2905 12 6 0.1565 -2.0746 -5.6946 13 7 -1.1876 -2.3882 -6.1856 14 6 -1.4794 -3.6372 -6.5996 15 8 -0.6290 -4.5013 -6.5662 16 6 -2.8619 -3.9598 -7.1052 17 16 -2.9383 -5.7042 -7.5817 18 6 -4.6140 -5.8020 -8.1175 19 1 -5.2445 -4.9258 -8.0814 20 6 -5.1241 -7.0053 -8.5849 21 7 -4.3559 -8.0732 -8.6283 22 14 -6.9008 -7.1091 -9.1522 23 1 -6.9762 -6.7992 -10.6025 24 1 -7.4180 -8.4800 -8.9115 25 1 -7.7207 -6.1304 -8.3937 26 6 2.6450 0.0478 -6.0306 27 6 2.1209 1.1931 -5.1621 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.1487 0.5385 -2.5436 32 1 3.2843 -0.9191 -3.6638 33 1 1.8519 -1.9755 -3.6379 34 1 -0.4413 -0.4270 -4.4421 35 1 -0.0939 0.0204 -6.1295 36 1 0.8852 -2.2675 -6.4819 37 1 0.3822 -2.6985 -4.8298 38 1 -1.8677 -1.6971 -6.2127 39 1 -3.5909 -3.7662 -6.3182 40 1 -3.0871 -3.3362 -7.9703 41 1 -4.7123 -8.9141 -8.9553 42 1 3.6801 -0.2612 -5.8845 43 1 2.2739 -0.0189 -7.0532 44 1 1.4049 1.8800 -5.6134 45 1 2.8108 1.6376 -4.4447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739301811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:20 Heat of formation + Delta-G solvation = -34.735640 kcal Electronic energy + Delta-G solvation = -25591.249141 eV Core-core repulsion = 21735.585976 eV Total energy + Delta-G solvation = -3855.663165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.68900 -39.43136 -38.66965 -36.95148 -34.94300 -34.64849 -33.57853 -32.43555 -30.99705 -28.74370 -27.48206 -25.65817 -25.49849 -23.75078 -22.78855 -21.39718 -20.57050 -19.84183 -18.36094 -17.81219 -17.70594 -16.49058 -16.35930 -16.03043 -15.90169 -15.70461 -15.25206 -14.96734 -14.81037 -14.35706 -14.29169 -13.99736 -13.79916 -13.60588 -13.24082 -13.16973 -12.97608 -12.83234 -12.59677 -12.42084 -12.36983 -12.25695 -12.04459 -11.97209 -11.79266 -11.46531 -11.07200 -11.03238 -10.78671 -10.74803 -10.58896 -10.18547 -9.82303 -9.59496 -9.41279 -9.07847 -8.90097 -8.24085 -6.50771 -6.22254 -3.92955 1.98427 2.02326 2.38117 2.74840 3.00059 3.09044 3.21544 3.23302 3.27784 3.30719 3.36776 3.68697 4.05889 4.12416 4.19509 4.19847 4.22826 4.37780 4.41920 4.43617 4.87685 4.90020 4.98166 5.03171 5.12812 5.16549 5.17316 5.18887 5.23280 5.40590 5.42593 5.46284 5.58167 5.63216 5.66637 5.79657 5.85044 5.89108 5.93320 6.11901 6.59003 6.86041 7.14020 7.58617 7.62336 7.67909 8.34338 8.60295 9.22906 10.85130 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.001917 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.051511 B =14605.520398 C =15781.174320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.010 4.010 3 H 0.141 0.859 4 C 0.218 3.782 5 N -0.409 5.409 6 C 0.520 3.480 7 O -0.523 6.523 8 N -0.718 5.718 9 C 0.153 3.847 10 C -0.142 4.142 11 C -0.092 4.092 12 C 0.121 3.879 13 N -0.740 5.740 14 C 0.530 3.470 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.158 4.158 27 C -0.167 4.167 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.404 0.596 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.397 0.603 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.207 27.764 10.789 31.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 H 0.158 0.842 4 C -0.101 4.101 5 N -0.083 5.083 6 C 0.304 3.696 7 O -0.398 6.398 8 N -0.371 5.371 9 C 0.030 3.970 10 C -0.143 4.143 11 C -0.129 4.129 12 C -0.003 4.003 13 N -0.395 5.395 14 C 0.316 3.684 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.195 4.195 27 C -0.205 4.205 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.239 0.761 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.231 0.769 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.750 24.559 12.287 30.277 hybrid contribution -2.828 1.857 -0.902 3.502 sum 9.922 26.417 11.384 30.429 Atomic orbital electron populations 1.21828 0.89376 1.04708 1.04490 1.18829 0.98921 1.00082 0.85588 0.84188 1.28061 0.93958 0.94081 0.94036 1.81221 1.07551 1.07518 1.12056 1.19996 0.80734 0.84750 0.84167 1.90832 1.37014 1.25544 1.86457 1.45836 1.53902 1.32285 1.05040 1.20947 0.98816 0.96421 0.80784 1.21545 0.95901 0.99433 0.97429 1.21307 0.93752 0.96101 1.01782 1.21241 0.84794 0.94559 0.99678 1.45988 1.13476 1.11970 1.68093 1.20317 0.89933 0.81499 0.76607 1.90716 1.49121 1.46362 1.52780 1.23528 0.95530 1.07650 1.03691 1.85433 1.16222 0.99132 1.82600 1.22862 0.96807 0.98992 1.49740 0.90935 1.25002 0.98799 0.94707 0.95141 1.70021 1.35977 1.00574 1.43654 0.86162 0.82687 0.77630 0.78982 1.20280 1.20752 1.19708 1.23081 0.98806 1.01746 0.95878 1.23069 1.03625 0.90391 1.03373 0.90103 0.89820 0.90728 0.76099 0.90858 0.89927 0.90683 0.90664 0.91437 0.91588 0.76949 0.89268 0.89261 0.92169 0.88223 0.87945 0.88268 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.29 9.05 37.16 0.34 0.05 16 2 C -0.01 -0.04 3.10 -94.56 -0.29 -0.33 16 3 H 0.14 -0.01 8.14 -51.93 -0.42 -0.43 16 4 C 0.22 1.93 13.88 -20.76 -0.29 1.64 16 5 N -0.41 -5.04 18.54 42.15 0.78 -4.26 16 6 C 0.52 3.65 7.14 -10.98 -0.08 3.57 16 7 O -0.52 -6.62 16.03 5.56 0.09 -6.54 16 8 N -0.72 -3.08 5.41 -60.30 -0.33 -3.41 16 9 C 0.15 0.95 5.54 -4.05 -0.02 0.93 16 10 C -0.14 -0.66 1.52 -154.52 -0.24 -0.90 16 11 C -0.09 -0.49 5.21 -26.73 -0.14 -0.63 16 12 C 0.12 1.22 5.44 -4.04 -0.02 1.20 16 13 N -0.74 -8.91 5.56 -60.29 -0.33 -9.25 16 14 C 0.53 9.59 7.85 -10.98 -0.09 9.50 16 15 O -0.52 -11.63 15.86 5.55 0.09 -11.54 16 16 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 22 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 C -0.16 -0.76 9.90 -26.73 -0.26 -1.02 16 27 C -0.17 -0.53 9.84 -26.73 -0.26 -0.79 16 28 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 29 H 0.08 -0.03 7.56 -51.93 -0.39 -0.43 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.40 0.41 7.85 -40.82 -0.32 0.09 16 32 H 0.07 0.50 7.94 -51.93 -0.41 0.09 16 33 H 0.08 0.71 6.72 -51.93 -0.35 0.36 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.77 6.96 -51.93 -0.36 0.41 16 38 H 0.40 3.47 8.47 -40.82 -0.35 3.12 16 39 H 0.09 1.61 8.14 -51.91 -0.42 1.18 16 40 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.10 0.48 8.08 -51.93 -0.42 0.06 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 404.89 15.07 6.10 6.10 Total: -1.00 -40.29 404.89 -7.83 -48.13 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -6.79 Total: -3.78 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -0.94 Total: -2.47 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.85 Total: -42.29 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.18 Total: -18.08 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -40.29 -7.83 -48.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739301811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.391 kcal (2) G-P(sol) polarization free energy of solvation -40.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds