Wall clock time and date at job start Sat Apr 11 2020 05:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47378 * 2 1 4 4 C 1.47201 * 109.46860 * 240.00007 * 2 1 3 5 5 N 2.60804 * 109.46893 * 240.00105 * 2 1 3 6 6 C 1.50701 * 109.47384 * 120.00282 * 2 1 3 7 7 O 1.21275 * 119.99875 * 88.92448 * 6 2 1 8 8 N 1.34779 * 119.99838 * 268.92938 * 6 2 1 9 9 C 1.47480 * 127.03107 * 184.97610 * 8 6 2 10 10 C 1.54009 * 107.08374 * 154.51246 * 9 8 6 11 11 C 1.54621 * 105.04104 * 1.30767 * 10 9 8 12 12 C 1.52999 * 110.73624 * 263.32699 * 11 10 9 13 13 C 1.53000 * 110.73662 * 140.18783 * 11 10 9 14 14 N 1.46497 * 109.47574 * 61.45304 * 13 11 10 15 15 C 1.34776 * 120.00377 * 180.02562 * 14 13 11 16 16 O 1.21285 * 119.99604 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00254 * 179.97438 * 15 14 13 18 18 S 1.81003 * 109.47258 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99984 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00004 * 0.02562 * 19 18 17 21 21 C 1.38800 * 119.99698 * 179.97438 * 19 18 17 22 22 N 1.31636 * 119.99705 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00249 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47150 * 89.99500 * 23 21 19 25 25 H 1.48493 * 109.46928 * 209.99886 * 23 21 19 26 26 H 1.48498 * 109.46808 * 329.99764 * 23 21 19 27 27 C 1.48117 * 127.03410 * 4.65476 * 8 6 2 28 28 H 1.09004 * 109.47369 * 184.50120 * 1 2 3 29 29 H 1.09005 * 109.46953 * 304.49505 * 1 2 3 30 30 H 1.08997 * 109.47659 * 64.49494 * 1 2 3 31 31 H 1.08994 * 109.91460 * 273.87028 * 9 8 6 32 32 H 1.08998 * 109.91518 * 35.15647 * 9 8 6 33 33 H 1.09004 * 110.32375 * 120.19876 * 10 9 8 34 34 H 1.09000 * 110.32820 * 242.40943 * 10 9 8 35 35 H 1.09003 * 109.47357 * 58.54929 * 12 11 10 36 36 H 1.08994 * 109.47166 * 178.54815 * 12 11 10 37 37 H 1.09006 * 109.47268 * 298.55122 * 12 11 10 38 38 H 1.08998 * 109.46783 * 181.45119 * 13 11 10 39 39 H 1.09001 * 109.46882 * 301.44861 * 13 11 10 40 40 H 0.97003 * 119.99799 * 359.97438 * 14 13 11 41 41 H 1.08998 * 109.47249 * 299.99638 * 17 15 14 42 42 H 1.09001 * 109.47166 * 59.99840 * 17 15 14 43 43 H 0.97001 * 119.99488 * 179.97438 * 22 21 19 44 44 H 1.09000 * 110.66281 * 337.77638 * 27 8 6 45 45 H 1.08999 * 110.65915 * 100.89149 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 -1.2019 5 7 2.3992 -1.2294 -2.1295 6 6 2.0323 -0.7105 1.2304 7 8 2.2159 -1.9090 1.2061 8 7 2.2776 -0.0139 2.3579 9 6 2.8637 -0.5279 3.6097 10 6 3.5275 0.6655 4.3220 11 6 3.2482 1.8827 3.4103 12 6 4.4407 2.1564 2.4917 13 6 2.9154 3.1204 4.2460 14 7 4.0588 3.4564 5.0980 15 6 3.9933 4.5174 5.9264 16 8 2.9877 5.1944 5.9663 17 6 5.1693 4.8627 6.8032 18 16 4.7756 6.3269 7.7917 19 6 6.2791 6.5002 8.6940 20 1 7.0872 5.8015 8.5361 21 6 6.4251 7.5354 9.6071 22 7 7.5481 7.6646 10.2816 23 14 5.0274 8.7444 9.8798 24 1 4.1447 8.2442 10.9642 25 1 5.5842 10.0660 10.2648 26 1 4.2422 8.8839 8.6272 27 6 2.0195 1.4259 2.5908 28 1 -0.3634 -1.0245 0.0807 29 1 -0.3633 0.5820 0.8470 30 1 -0.3634 0.4425 -0.9275 31 1 2.0809 -0.9483 4.2410 32 1 3.6114 -1.2884 3.3848 33 1 3.0794 0.8171 5.3040 34 1 4.6009 0.5010 4.4160 35 1 4.6414 1.2739 1.8841 36 1 4.2121 3.0008 1.8414 37 1 5.3182 2.3895 3.0949 38 1 2.6974 3.9581 3.5836 39 1 2.0456 2.9144 4.8698 40 1 4.8629 2.9147 5.0664 41 1 5.3872 4.0247 7.4654 42 1 6.0392 5.0688 6.1797 43 1 7.6502 8.3882 10.9194 44 1 1.9669 1.9652 1.6450 45 1 1.1036 1.5645 3.1652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739872075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:22 Heat of formation + Delta-G solvation = -47.573548 kcal Electronic energy + Delta-G solvation = -26314.265085 eV Core-core repulsion = 22458.045226 eV Total energy + Delta-G solvation = -3856.219858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.14838 -39.66763 -38.59058 -37.01149 -35.17109 -33.96744 -32.55772 -32.46472 -30.44656 -29.57951 -27.56361 -26.20407 -25.76597 -25.45606 -23.69101 -20.85889 -20.41676 -19.78573 -18.17645 -17.99702 -17.87935 -16.82000 -16.43253 -15.94913 -15.76607 -15.45401 -15.11353 -14.98547 -14.62116 -14.45130 -14.20560 -13.98735 -13.75223 -13.56817 -13.40359 -13.32537 -13.17722 -12.99146 -12.83725 -12.80433 -12.58827 -12.38959 -12.27961 -12.07658 -11.81645 -11.56443 -11.30476 -11.24572 -11.14167 -11.04394 -10.65451 -10.44166 -9.90007 -9.63403 -9.31802 -9.10470 -9.02798 -8.55132 -6.96441 -6.32581 -4.04821 1.76665 1.95076 2.26609 2.54192 2.70960 2.88925 3.21660 3.27133 3.30205 3.46698 3.56563 3.67394 3.88898 4.11403 4.15769 4.20788 4.29360 4.30087 4.56625 4.67042 4.67727 4.71159 4.82366 4.89238 4.98344 5.06479 5.07680 5.18677 5.19426 5.28542 5.36339 5.37725 5.43337 5.48925 5.52403 5.65394 5.67405 5.71026 5.81706 5.95207 6.39909 6.79897 7.02196 7.44264 7.49027 7.90354 8.37802 8.39547 9.13473 10.76583 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032299 B = 0.001838 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.690392 B =15227.979063 C =15440.231812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.009 4.009 3 H 0.135 0.865 4 C 0.218 3.782 5 N -0.408 5.408 6 C 0.544 3.456 7 O -0.525 6.525 8 N -0.614 5.614 9 C 0.109 3.891 10 C -0.129 4.129 11 C -0.088 4.088 12 C -0.140 4.140 13 C 0.138 3.862 14 N -0.735 5.735 15 C 0.532 3.468 16 O -0.519 6.519 17 C -0.125 4.125 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.106 3.894 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.399 0.601 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.090 0.910 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.729 -14.623 -18.176 26.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 H 0.152 0.848 4 C -0.102 4.102 5 N -0.083 5.083 6 C 0.330 3.670 7 O -0.400 6.400 8 N -0.348 5.348 9 C -0.014 4.014 10 C -0.167 4.167 11 C -0.089 4.089 12 C -0.197 4.197 13 C 0.013 3.987 14 N -0.390 5.390 15 C 0.318 3.682 16 O -0.393 6.393 17 C -0.276 4.276 18 S 0.085 5.915 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.017 4.017 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.650 -14.924 -19.482 28.082 hybrid contribution 1.165 -0.190 0.732 1.389 sum -12.485 -15.114 -18.750 27.127 Atomic orbital electron populations 1.21768 0.88943 1.04646 1.04627 1.18806 0.99318 0.99812 0.85373 0.84757 1.28096 0.94036 0.93949 0.94081 1.81233 1.07663 1.07733 1.11685 1.19555 0.77956 0.86867 0.82656 1.90802 1.51737 1.14085 1.83409 1.48647 1.62232 1.10916 1.12984 1.22063 0.98019 0.97088 0.84191 1.22714 1.02202 0.92757 0.99040 1.21868 0.96248 0.94909 0.95915 1.21839 0.96799 1.01961 0.99142 1.21196 0.89512 0.95275 0.92725 1.45918 1.18389 1.31669 1.43027 1.20267 0.88983 0.79467 0.79527 1.90708 1.32296 1.49868 1.66427 1.23278 0.98965 1.04337 1.00975 1.84790 1.25139 1.31823 1.49760 1.22309 0.99785 1.18372 1.26528 0.89388 1.24723 0.95813 0.96718 0.94080 1.69941 1.24857 1.31950 1.24856 0.86730 0.82769 0.80954 0.81363 1.19208 1.19944 1.15925 1.22643 0.97910 0.80347 1.00819 0.90721 0.89688 0.90001 0.90911 0.90277 0.89419 0.89870 0.92212 0.91728 0.91691 0.91004 0.91040 0.76613 0.88511 0.88488 0.91920 0.89192 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.34 9.13 37.15 0.34 0.00 16 2 C -0.01 -0.04 2.69 -94.56 -0.25 -0.29 16 3 H 0.13 0.14 6.51 -51.93 -0.34 -0.20 16 4 C 0.22 1.82 14.09 -20.76 -0.29 1.52 16 5 N -0.41 -4.69 18.54 42.15 0.78 -3.91 16 6 C 0.54 3.90 6.91 -10.98 -0.08 3.83 16 7 O -0.53 -6.22 16.74 5.56 0.09 -6.13 16 8 N -0.61 -3.19 3.22 -169.99 -0.55 -3.73 16 9 C 0.11 0.58 6.94 -2.98 -0.02 0.56 16 10 C -0.13 -0.57 5.52 -25.35 -0.14 -0.71 16 11 C -0.09 -0.38 0.64 -152.82 -0.10 -0.48 16 12 C -0.14 -0.64 8.29 37.16 0.31 -0.33 16 13 C 0.14 0.99 4.50 -4.04 -0.02 0.97 16 14 N -0.73 -7.10 5.10 -60.30 -0.31 -7.41 16 15 C 0.53 8.18 7.85 -10.99 -0.09 8.10 16 16 O -0.52 -10.02 15.86 5.55 0.09 -9.94 16 17 C -0.12 -2.20 6.16 36.00 0.22 -1.98 16 18 S -0.14 -3.42 18.55 -107.50 -1.99 -5.41 16 19 C -0.52 -14.58 10.04 30.94 0.31 -14.26 16 20 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 21 C 0.10 2.72 5.50 -17.43 -0.10 2.63 16 22 N -0.88 -25.98 13.97 55.49 0.78 -25.21 16 23 Si 0.86 21.19 27.74 -169.99 -4.72 16.47 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.24 -5.78 6.74 56.52 0.38 -5.40 16 27 C 0.11 0.31 5.85 -2.32 -0.01 0.30 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.09 0.42 7.85 -51.93 -0.41 0.01 16 34 H 0.08 0.35 7.86 -51.93 -0.41 -0.06 16 35 H 0.06 0.29 8.10 -51.93 -0.42 -0.13 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 0.32 7.11 -51.93 -0.37 -0.05 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.56 8.12 -51.93 -0.42 0.13 16 40 H 0.40 2.92 7.18 -40.82 -0.29 2.63 16 41 H 0.10 1.58 8.14 -51.92 -0.42 1.16 16 42 H 0.10 1.59 8.14 -51.91 -0.42 1.17 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.09 0.08 6.35 -51.93 -0.33 -0.25 16 45 H 0.09 0.19 8.03 -51.93 -0.42 -0.22 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -37.90 391.47 -6.63 -44.52 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -6.78 Total: -5.01 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 0.08 Total: -0.15 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.70 Total: -40.25 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.18 Total: -16.07 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.72 Total: 16.47 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -1.99 Total: -5.41 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.90 -6.63 -44.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739872075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.051 kcal (2) G-P(sol) polarization free energy of solvation -37.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds