Wall clock time and date at job start Sat Apr 11 2020 05:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.47202 * 109.47534 * 120.00226 * 2 1 3 5 5 N 2.60798 * 109.47438 * 120.00225 * 2 1 3 6 6 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 7 7 O 1.21282 * 119.99865 * 240.00203 * 6 2 1 8 8 N 1.34774 * 120.00164 * 59.99708 * 6 2 1 9 9 C 1.47420 * 125.64691 * 359.69223 * 8 6 2 10 10 C 1.55133 * 104.72553 * 155.81726 * 9 8 6 11 11 C 1.55156 * 101.47979 * 37.29751 * 10 9 8 12 12 C 1.52997 * 110.87499 * 82.77056 * 11 10 9 13 13 C 1.53007 * 110.71821 * 205.97215 * 11 10 9 14 14 N 1.46495 * 109.46826 * 293.51963 * 13 11 10 15 15 C 1.34786 * 119.99954 * 179.97438 * 14 13 11 16 16 O 1.21283 * 119.99604 * 0.02562 * 15 14 13 17 17 C 1.50690 * 119.99804 * 180.02562 * 15 14 13 18 18 S 1.81009 * 109.47119 * 180.02562 * 17 15 14 19 19 C 1.76189 * 100.00211 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00274 * 359.97438 * 19 18 17 21 21 C 1.38805 * 120.00013 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99764 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00214 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47068 * 89.99560 * 23 21 19 25 25 H 1.48494 * 109.47546 * 209.99996 * 23 21 19 26 26 H 1.48502 * 109.46870 * 329.99993 * 23 21 19 27 27 C 1.47021 * 125.65039 * 180.02562 * 8 6 2 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 1.08998 * 110.37152 * 274.74807 * 9 8 6 32 32 H 1.09002 * 110.37132 * 37.07093 * 9 8 6 33 33 H 1.08999 * 111.19299 * 279.19814 * 10 9 8 34 34 H 1.08997 * 110.90839 * 155.27531 * 10 9 8 35 35 H 1.09002 * 109.46966 * 306.38487 * 12 11 10 36 36 H 1.09000 * 109.47210 * 66.38662 * 12 11 10 37 37 H 1.09004 * 109.47565 * 186.38916 * 12 11 10 38 38 H 1.08997 * 109.47420 * 53.52108 * 13 11 10 39 39 H 1.09004 * 109.46800 * 173.52241 * 13 11 10 40 40 H 0.97003 * 120.00603 * 0.02562 * 14 13 11 41 41 H 1.09007 * 109.47515 * 299.99734 * 17 15 14 42 42 H 1.09004 * 109.47473 * 60.00499 * 17 15 14 43 43 H 0.96997 * 120.00305 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.88088 * 300.44210 * 27 8 6 45 45 H 1.08997 * 109.87956 * 61.60567 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2295 2.1293 6 6 2.0324 -0.7103 -1.2306 7 8 2.7296 -1.6964 -1.1193 8 7 1.7068 -0.2498 -2.4546 9 6 0.8657 0.9283 -2.7336 10 6 1.2939 1.3918 -4.1508 11 6 1.5388 0.0333 -4.8592 12 6 0.2250 -0.5572 -5.3750 13 6 2.5441 0.1919 -6.0016 14 7 1.9596 1.0268 -7.0540 15 6 2.6690 1.3045 -8.1659 16 8 3.7911 0.8628 -8.2953 17 6 2.0679 2.1637 -9.2481 18 16 3.2571 2.3514 -10.5997 19 6 2.3208 3.3683 -11.6922 20 1 1.3220 3.6764 -11.4203 21 6 2.8663 3.7726 -12.9028 22 7 4.0834 3.3967 -13.2344 23 14 1.8739 4.8513 -14.0607 24 1 2.1332 6.2802 -13.7504 25 1 2.2719 4.5692 -15.4633 26 1 0.4275 4.5620 -13.8890 27 6 2.1258 -0.8433 -3.7328 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 -0.1887 0.6525 -2.7247 32 1 1.0592 1.7142 -2.0035 33 1 2.2089 1.9828 -4.1124 34 1 0.4921 1.9471 -4.6373 35 1 -0.4950 -0.6101 -4.5584 36 1 -0.1714 0.0765 -6.1684 37 1 0.4053 -1.5587 -5.7658 38 1 3.4510 0.6646 -5.6246 39 1 2.7882 -0.7890 -6.4096 40 1 1.0623 1.3804 -6.9503 41 1 1.1610 1.6912 -9.6256 42 1 1.8238 3.1445 -8.8398 43 1 4.4646 3.6789 -14.0805 44 1 3.2138 -0.8516 -3.7986 45 1 1.7396 -1.8593 -3.8141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739872076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:25 Heat of formation + Delta-G solvation = -46.274398 kcal Electronic energy + Delta-G solvation = -26197.537476 eV Core-core repulsion = 22341.373953 eV Total energy + Delta-G solvation = -3856.163523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.16399 -39.57399 -38.48987 -36.94698 -35.31635 -33.94789 -32.46790 -32.39420 -30.30585 -29.40191 -27.53874 -26.36103 -25.63869 -25.25030 -23.58379 -20.94668 -20.25769 -19.82866 -18.11291 -18.01386 -17.55699 -16.72334 -16.35931 -16.32416 -15.52850 -15.43311 -15.08988 -14.83272 -14.59365 -14.33330 -14.19759 -13.93511 -13.69321 -13.53264 -13.36375 -13.19525 -13.15541 -12.93730 -12.74144 -12.62419 -12.57028 -12.45963 -12.18230 -12.06695 -11.78973 -11.47677 -11.17629 -11.09221 -11.07523 -11.05317 -10.79014 -10.40980 -9.84915 -9.47581 -9.23898 -9.10292 -8.96049 -8.26992 -6.53507 -6.24668 -3.95541 1.89616 1.94319 2.32401 2.61183 2.97862 3.04469 3.19768 3.24353 3.25392 3.28706 3.58718 3.76671 3.88433 4.12034 4.16917 4.17435 4.22099 4.34141 4.57857 4.59076 4.66448 4.85133 4.92457 4.95869 5.08218 5.10615 5.20673 5.23436 5.29616 5.33834 5.40180 5.45189 5.49802 5.57119 5.60993 5.66859 5.78703 5.83902 5.87257 6.08461 6.51954 6.81562 7.07743 7.49552 7.56233 7.62231 8.31883 8.55344 9.20653 10.82725 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033960 B = 0.001742 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.301474 B =16073.901810 C =16398.800892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.007 4.007 3 H 0.141 0.859 4 C 0.220 3.780 5 N -0.409 5.409 6 C 0.538 3.462 7 O -0.525 6.525 8 N -0.611 5.611 9 C 0.092 3.908 10 C -0.127 4.127 11 C -0.085 4.085 12 C -0.140 4.140 13 C 0.137 3.863 14 N -0.736 5.736 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.120 3.880 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.078 0.922 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.704 -2.879 24.076 27.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 H 0.158 0.842 4 C -0.100 4.100 5 N -0.084 5.084 6 C 0.324 3.676 7 O -0.400 6.400 8 N -0.345 5.345 9 C -0.030 4.030 10 C -0.165 4.165 11 C -0.086 4.086 12 C -0.197 4.197 13 C 0.012 3.988 14 N -0.392 5.392 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.002 4.002 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.685 -5.007 25.270 27.890 hybrid contribution -2.466 1.638 -0.969 3.115 sum -13.151 -3.369 24.302 27.837 Atomic orbital electron populations 1.21964 0.89529 1.04573 1.04875 1.18760 0.98905 1.00122 0.85334 0.84172 1.28034 0.93915 0.94034 0.93989 1.81213 1.07496 1.07640 1.12013 1.19623 0.80595 0.84549 0.82876 1.90822 1.37449 1.25932 1.85808 1.48295 1.51221 1.30002 1.05008 1.22663 0.95063 0.87405 0.97883 1.23016 1.03371 0.96310 0.93765 1.21858 0.96745 0.95674 0.94324 1.21860 0.95086 1.01578 1.01198 1.21187 0.94933 0.96060 0.86576 1.45972 1.19430 1.54386 1.19424 1.20310 0.85677 0.80328 0.81927 1.90719 1.18700 1.51269 1.78286 1.23525 1.05556 1.01164 1.00146 1.85434 1.19021 1.66861 1.12036 1.22862 1.03546 1.36455 1.05626 0.90924 1.24991 0.95229 0.96159 0.97178 1.70011 1.14149 1.43120 1.22939 0.86170 0.79808 0.80110 0.79421 1.20271 1.20748 1.19708 1.21984 1.00557 0.96940 0.80743 0.90062 0.90963 0.89364 0.90216 0.89791 0.89544 0.89050 0.92040 0.91652 0.91643 0.91148 0.91107 0.76830 0.89250 0.89247 0.92152 0.90374 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.24 8.95 37.16 0.33 0.09 16 2 C -0.01 -0.03 2.45 -94.56 -0.23 -0.26 16 3 H 0.14 0.13 7.85 -51.93 -0.41 -0.28 16 4 C 0.22 1.88 13.88 -20.76 -0.29 1.60 16 5 N -0.41 -4.83 18.54 42.15 0.78 -4.05 16 6 C 0.54 4.06 7.20 -10.98 -0.08 3.98 16 7 O -0.52 -6.65 16.36 5.56 0.09 -6.56 16 8 N -0.61 -3.34 3.32 -170.38 -0.57 -3.90 16 9 C 0.09 0.20 4.82 -2.41 -0.01 0.19 16 10 C -0.13 -0.45 5.74 -24.46 -0.14 -0.59 16 11 C -0.09 -0.46 0.61 -152.67 -0.09 -0.55 16 12 C -0.14 -0.65 8.28 37.16 0.31 -0.34 16 13 C 0.14 1.26 4.49 -4.04 -0.02 1.24 16 14 N -0.74 -7.96 5.11 -60.29 -0.31 -8.27 16 15 C 0.53 9.00 7.85 -10.99 -0.09 8.91 16 16 O -0.52 -11.08 15.86 5.56 0.09 -10.99 16 17 C -0.15 -2.86 6.16 36.00 0.22 -2.64 16 18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 19 C -0.54 -14.85 9.50 30.94 0.29 -14.56 16 20 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 22 N -0.87 -25.68 13.22 55.49 0.73 -24.94 16 23 Si 0.92 20.86 29.55 -169.99 -5.02 15.84 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 C 0.12 0.79 6.05 -3.06 -0.02 0.77 16 28 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 29 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 -0.02 4.98 -51.93 -0.26 -0.28 16 31 H 0.08 0.05 6.63 -51.93 -0.34 -0.29 16 32 H 0.08 0.01 7.34 -51.93 -0.38 -0.37 16 33 H 0.09 0.40 8.02 -51.93 -0.42 -0.02 16 34 H 0.09 0.21 8.04 -51.93 -0.42 -0.20 16 35 H 0.06 0.21 7.41 -51.93 -0.38 -0.17 16 36 H 0.06 0.30 6.69 -51.93 -0.35 -0.05 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.40 3.07 7.02 -40.82 -0.29 2.78 16 41 H 0.09 1.53 8.14 -51.91 -0.42 1.11 16 42 H 0.09 1.52 8.14 -51.91 -0.42 1.09 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.08 0.62 7.82 -51.93 -0.41 0.22 16 45 H 0.08 0.54 7.84 -51.93 -0.41 0.14 16 LS Contribution 388.03 15.07 5.85 5.85 Total: -1.00 -39.08 388.03 -7.03 -46.12 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -6.56 Total: -5.09 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 0.09 Total: -0.21 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.64 Total: -41.17 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.18 Total: -17.55 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.08 -7.03 -46.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739872076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.157 kcal (2) G-P(sol) polarization free energy of solvation -39.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds