Wall clock time and date at job start Sat Apr 11 2020 05:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47128 * 2 1 4 4 C 1.47199 * 109.47088 * 239.99781 * 2 1 3 5 5 N 2.60799 * 109.47176 * 239.99575 * 2 1 3 6 6 C 1.50701 * 109.47038 * 119.99601 * 2 1 3 7 7 O 1.21281 * 119.99786 * 87.59246 * 6 2 1 8 8 N 1.34778 * 120.00097 * 267.58530 * 6 2 1 9 9 C 1.48114 * 127.03169 * 174.72436 * 8 6 2 10 10 C 1.54945 * 103.25458 * 140.74956 * 9 8 6 11 11 C 1.54625 * 102.83715 * 37.37550 * 10 9 8 12 12 C 1.53001 * 110.40977 * 97.08507 * 11 10 9 13 13 C 1.52992 * 110.32718 * 219.26139 * 11 10 9 14 14 N 1.46497 * 109.47350 * 295.61857 * 13 11 10 15 15 C 1.34776 * 120.00436 * 180.02562 * 14 13 11 16 16 O 1.21279 * 119.99808 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00258 * 180.02562 * 15 14 13 18 18 S 1.80997 * 109.47126 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00084 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99712 * 0.02562 * 19 18 17 21 21 C 1.38793 * 119.99921 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00103 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99806 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47212 * 90.00063 * 23 21 19 25 25 H 1.48503 * 109.47025 * 209.99919 * 23 21 19 26 26 H 1.48498 * 109.47081 * 329.99779 * 23 21 19 27 27 C 1.47481 * 127.03344 * 354.77860 * 8 6 2 28 28 H 1.09005 * 109.46844 * 305.99393 * 1 2 3 29 29 H 1.09000 * 109.47018 * 65.99147 * 1 2 3 30 30 H 1.09002 * 109.46732 * 185.99509 * 1 2 3 31 31 H 1.09000 * 110.66957 * 259.19167 * 9 8 6 32 32 H 1.09003 * 110.66428 * 22.14657 * 9 8 6 33 33 H 1.09002 * 110.74056 * 279.04719 * 10 9 8 34 34 H 1.08993 * 110.74445 * 155.71362 * 10 9 8 35 35 H 1.08997 * 109.47243 * 182.89292 * 12 11 10 36 36 H 1.09000 * 109.47577 * 302.90016 * 12 11 10 37 37 H 1.09004 * 109.46617 * 62.89689 * 12 11 10 38 38 H 1.08998 * 109.47716 * 55.62199 * 13 11 10 39 39 H 1.09008 * 109.47170 * 175.62386 * 13 11 10 40 40 H 0.97004 * 119.99900 * 0.02562 * 14 13 11 41 41 H 1.09004 * 109.47055 * 299.99853 * 17 15 14 42 42 H 1.08996 * 109.47393 * 59.99618 * 17 15 14 43 43 H 0.97010 * 120.00066 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.91528 * 86.04334 * 27 8 6 45 45 H 1.09000 * 109.91117 * 324.76711 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2296 -2.1293 6 6 2.0324 -0.7103 1.2305 7 8 2.1929 -1.9124 1.2137 8 7 2.3033 -0.0098 2.3496 9 6 2.6968 -0.5545 3.6696 10 6 3.7699 0.4487 4.1623 11 6 3.2239 1.8074 3.6655 12 6 2.4639 2.5192 4.7866 13 6 4.3685 2.6870 3.1588 14 7 5.2656 3.0099 4.2711 15 6 6.3515 3.7797 4.0595 16 8 6.5858 4.2054 2.9483 17 6 7.2745 4.1114 5.2037 18 16 8.6286 5.1521 4.6042 19 6 9.5255 5.3810 6.1035 20 1 9.1739 4.9262 7.0178 21 6 10.6842 6.1450 6.1093 22 7 11.1129 6.6989 4.9948 23 14 11.6354 6.3871 7.6987 24 1 12.6436 5.3064 7.8417 25 1 12.3217 7.7036 7.6691 26 1 10.6968 6.3439 8.8487 27 6 2.2677 1.4558 2.5106 28 1 -0.3633 0.6040 0.8315 29 1 -0.3633 0.4181 -0.9388 30 1 -0.3633 -1.0221 0.1073 31 1 1.8444 -0.5703 4.3488 32 1 3.1205 -1.5531 3.5629 33 1 4.7374 0.2327 3.7090 34 1 3.8404 0.4355 5.2499 35 1 2.0426 3.4496 4.4061 36 1 1.6603 1.8764 5.1459 37 1 3.1478 2.7385 5.6066 38 1 4.9236 2.1526 2.3878 39 1 3.9616 3.6080 2.7411 40 1 5.0780 2.6697 5.1599 41 1 6.7196 4.6453 5.9751 42 1 7.6818 3.1904 5.6207 43 1 11.9226 7.2332 4.9989 44 1 1.2556 1.7779 2.7554 45 1 2.6017 1.9383 1.5921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739872077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:28 Heat of formation + Delta-G solvation = -47.581729 kcal Electronic energy + Delta-G solvation = -26324.074208 eV Core-core repulsion = 22467.853995 eV Total energy + Delta-G solvation = -3856.220213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.07082 -39.58517 -38.49401 -36.92486 -35.10397 -33.88712 -32.54874 -32.45008 -30.34759 -29.43963 -27.34206 -26.23749 -25.68222 -25.31429 -23.64145 -20.78393 -20.30292 -19.78643 -18.14905 -17.98952 -17.74354 -16.63592 -16.41844 -15.88594 -15.72593 -15.36572 -15.07257 -14.82898 -14.50463 -14.23488 -14.19428 -13.96676 -13.79612 -13.49793 -13.34829 -13.16399 -13.04063 -12.86325 -12.72796 -12.58744 -12.52133 -12.38002 -12.32265 -12.02389 -11.74629 -11.55925 -11.12641 -11.09452 -11.08394 -11.05165 -10.78594 -10.36663 -9.84729 -9.50774 -9.27074 -9.10078 -8.97018 -8.27147 -6.53344 -6.24451 -3.95333 1.84894 2.01104 2.35846 2.63115 2.96886 3.03780 3.20263 3.25411 3.28873 3.34714 3.60483 3.74983 3.99901 4.09879 4.17674 4.21191 4.27646 4.34884 4.62952 4.69505 4.76394 4.92383 4.93425 5.02239 5.08013 5.10833 5.15226 5.20106 5.28251 5.36679 5.41036 5.41328 5.52876 5.58453 5.59896 5.66510 5.77111 5.83775 5.88312 6.08988 6.51501 6.86104 7.11450 7.49993 7.56552 7.61603 8.32230 8.54464 9.20930 10.82898 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021787 B = 0.001941 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.874457 B =14419.386402 C =14958.256257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.009 4.009 3 H 0.135 0.865 4 C 0.216 3.784 5 N -0.407 5.407 6 C 0.545 3.455 7 O -0.525 6.525 8 N -0.616 5.616 9 C 0.106 3.894 10 C -0.129 4.129 11 C -0.086 4.086 12 C -0.140 4.140 13 C 0.135 3.865 14 N -0.737 5.737 15 C 0.532 3.468 16 O -0.517 6.517 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.106 3.894 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.083 0.917 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.950 -11.081 -0.699 28.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 H 0.152 0.848 4 C -0.103 4.103 5 N -0.082 5.082 6 C 0.331 3.669 7 O -0.400 6.400 8 N -0.350 5.350 9 C -0.016 4.016 10 C -0.167 4.167 11 C -0.087 4.087 12 C -0.197 4.197 13 C 0.010 3.990 14 N -0.392 5.392 15 C 0.318 3.682 16 O -0.391 6.391 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.018 4.018 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.780 -11.772 -4.171 27.749 hybrid contribution 0.216 -0.164 3.135 3.147 sum -24.564 -11.936 -1.036 27.330 Atomic orbital electron populations 1.21737 0.88945 1.04515 1.04516 1.18819 0.99228 0.99911 0.85372 0.84790 1.28097 0.94100 0.94000 0.94114 1.81233 1.07512 1.07771 1.11663 1.19570 0.77658 0.86985 0.82720 1.90797 1.52080 1.14209 1.82953 1.48692 1.68123 1.07807 1.10426 1.22530 0.97548 0.98860 0.82656 1.22918 0.99033 0.92794 1.01985 1.21724 0.95260 0.95893 0.95845 1.21907 1.00036 1.00436 0.97355 1.21331 0.89513 0.98455 0.89694 1.45978 1.26684 1.54507 1.12059 1.20310 0.80478 0.77211 0.90209 1.90711 1.72347 1.51165 1.24835 1.23525 1.01905 1.05405 0.99578 1.85418 1.21482 1.61593 1.14891 1.22857 1.12440 1.37748 0.95348 0.90924 1.24997 0.96468 0.94770 0.97386 1.70017 1.22687 1.31299 1.26237 0.86166 0.79588 0.77789 0.81945 1.20270 1.20748 1.19696 1.22307 1.00042 0.80132 0.99279 0.89816 0.90019 0.90772 0.90448 0.89402 0.89907 0.89278 0.91602 0.91906 0.91670 0.91391 0.91140 0.76779 0.89232 0.89267 0.92161 0.89879 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.40 9.14 37.16 0.34 -0.06 16 2 C -0.01 -0.05 2.81 -94.56 -0.27 -0.31 16 3 H 0.13 0.31 6.52 -51.93 -0.34 -0.03 16 4 C 0.22 2.07 14.11 -20.76 -0.29 1.78 16 5 N -0.41 -5.21 18.54 42.15 0.78 -4.42 16 6 C 0.54 4.41 6.89 -10.98 -0.08 4.34 16 7 O -0.53 -6.64 16.58 5.56 0.09 -6.55 16 8 N -0.62 -3.66 3.29 -169.76 -0.56 -4.22 16 9 C 0.11 0.59 7.11 -2.13 -0.02 0.57 16 10 C -0.13 -0.67 5.74 -24.85 -0.14 -0.81 16 11 C -0.09 -0.42 0.67 -153.13 -0.10 -0.52 16 12 C -0.14 -0.53 8.03 37.16 0.30 -0.23 16 13 C 0.13 1.16 4.26 -4.05 -0.02 1.15 16 14 N -0.74 -8.03 5.08 -60.30 -0.31 -8.34 16 15 C 0.53 9.03 7.85 -10.98 -0.09 8.95 16 16 O -0.52 -11.02 15.86 5.56 0.09 -10.93 16 17 C -0.15 -2.90 6.16 36.01 0.22 -2.68 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -14.92 9.50 30.94 0.29 -14.63 16 20 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 21 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 22 N -0.87 -25.81 13.22 55.49 0.73 -25.07 16 23 Si 0.92 21.04 29.55 -169.99 -5.02 16.01 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 C 0.11 0.39 5.98 -2.98 -0.02 0.37 16 28 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.08 0.15 8.13 -51.93 -0.42 -0.27 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.63 7.81 -51.93 -0.41 0.23 16 33 H 0.08 0.60 7.84 -51.93 -0.41 0.19 16 34 H 0.09 0.35 7.86 -51.93 -0.41 -0.06 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.06 0.28 6.78 -51.93 -0.35 -0.07 16 38 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 39 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.40 3.22 6.99 -40.82 -0.29 2.93 16 41 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 42 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.08 0.13 7.68 -51.93 -0.40 -0.26 16 45 H 0.08 0.24 6.43 -51.93 -0.33 -0.09 16 LS Contribution 393.15 15.07 5.92 5.92 Total: -1.00 -38.92 393.15 -7.14 -46.06 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -6.70 Total: -4.52 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 0.04 Total: -0.14 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.65 Total: -42.06 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.18 Total: -17.48 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.92 -7.14 -46.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739872077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.526 kcal (2) G-P(sol) polarization free energy of solvation -38.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds