Wall clock time and date at job start Sat Apr 11 2020 05:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47198 * 2 1 4 4 C 1.47196 * 109.47363 * 120.00538 * 2 1 3 5 5 N 2.60794 * 109.47433 * 120.00541 * 2 1 3 6 6 C 1.50702 * 109.46824 * 240.00290 * 2 1 3 7 7 O 1.21282 * 120.00103 * 239.99938 * 6 2 1 8 8 N 1.34786 * 120.00009 * 59.99838 * 6 2 1 9 9 C 1.47485 * 127.03052 * 0.02562 * 8 6 2 10 10 C 1.54005 * 107.24392 * 154.61643 * 9 8 6 11 11 C 1.54616 * 105.04550 * 1.20635 * 10 9 8 12 12 C 1.53004 * 110.74066 * 263.33330 * 11 10 9 13 13 C 1.52999 * 110.73839 * 140.18699 * 11 10 9 14 14 N 1.46498 * 109.47179 * 61.45720 * 13 11 10 15 15 C 1.34770 * 120.00167 * 180.02562 * 14 13 11 16 16 O 1.21278 * 120.00194 * 359.97438 * 15 14 13 17 17 C 1.50706 * 120.00032 * 179.97438 * 15 14 13 18 18 S 1.81001 * 109.47150 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00013 * 179.97438 * 18 17 15 20 20 H 1.07993 * 119.99740 * 0.02562 * 19 18 17 21 21 C 1.38796 * 119.99859 * 179.97438 * 19 18 17 22 22 N 1.31637 * 120.00072 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00138 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47091 * 89.99950 * 23 21 19 25 25 H 1.48499 * 109.47287 * 210.00521 * 23 21 19 26 26 H 1.48502 * 109.46570 * 330.00086 * 23 21 19 27 27 C 1.48377 * 127.17223 * 179.82156 * 8 6 2 28 28 H 1.09006 * 109.46941 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46651 * 299.99724 * 1 2 3 30 30 H 1.08993 * 109.47347 * 59.99610 * 1 2 3 31 31 H 1.09002 * 109.91598 * 35.15729 * 9 8 6 32 32 H 1.08999 * 109.91369 * 274.06810 * 9 8 6 33 33 H 1.08993 * 110.32614 * 120.10270 * 10 9 8 34 34 H 1.09001 * 110.32306 * 242.31588 * 10 9 8 35 35 H 1.08997 * 109.47043 * 58.54693 * 12 11 10 36 36 H 1.08996 * 109.47111 * 178.54567 * 12 11 10 37 37 H 1.08998 * 109.46959 * 298.54615 * 12 11 10 38 38 H 1.09004 * 109.47095 * 181.45240 * 13 11 10 39 39 H 1.08996 * 109.47379 * 301.45217 * 13 11 10 40 40 H 0.97008 * 119.99999 * 359.97438 * 14 13 11 41 41 H 1.08996 * 109.47138 * 299.99815 * 17 15 14 42 42 H 1.08999 * 109.47302 * 60.00173 * 17 15 14 43 43 H 0.97000 * 119.99763 * 179.97438 * 22 21 19 44 44 H 1.09005 * 110.51886 * 100.79006 * 27 8 6 45 45 H 1.09006 * 110.83140 * 337.82723 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 1.2018 5 7 2.3995 -1.2296 2.1292 6 6 2.0323 -0.7104 -1.2305 7 8 2.7295 -1.6965 -1.1194 8 7 1.7066 -0.2498 -2.4547 9 6 0.8750 0.9271 -2.7687 10 6 1.2956 1.4240 -4.1643 11 6 2.3915 0.4370 -4.6284 12 6 3.7848 0.9998 -4.3404 13 6 2.2362 0.1153 -6.1161 14 7 2.3845 1.3443 -6.8996 15 6 2.2848 1.3033 -8.2429 16 8 2.0727 0.2489 -8.8034 17 6 2.4368 2.5677 -9.0488 18 16 2.2532 2.1872 -10.8088 19 6 2.4693 3.7961 -11.4939 20 1 2.6525 4.6393 -10.8445 21 6 2.4051 3.9796 -12.8681 22 7 2.1823 2.9516 -13.6597 23 14 2.6335 5.6854 -13.5944 24 1 4.0727 5.9126 -13.8813 25 1 1.8543 5.7956 -14.8537 26 1 2.1550 6.7039 -12.6255 27 6 2.1129 -0.8181 -3.7637 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.0449 1.7097 -2.0292 32 1 -0.1781 0.6461 -2.7764 33 1 0.4470 1.3963 -4.8477 34 1 1.6987 2.4348 -4.1008 35 1 3.8850 1.1929 -3.2724 36 1 4.5397 0.2777 -4.6515 37 1 3.9222 1.9297 -4.8922 38 1 3.0019 -0.6006 -6.4150 39 1 1.2496 -0.3123 -6.2944 40 1 2.5538 2.1878 -6.4513 41 1 1.6712 3.2835 -8.7497 42 1 3.4235 2.9955 -8.8710 43 1 2.1371 3.0800 -14.6201 44 1 1.3027 -1.4083 -4.1920 45 1 3.0144 -1.4223 -3.6610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739872078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:30 Heat of formation + Delta-G solvation = -46.163386 kcal Electronic energy + Delta-G solvation = -26227.059777 eV Core-core repulsion = 22370.901068 eV Total energy + Delta-G solvation = -3856.158709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.11032 -39.55595 -38.46719 -36.95117 -35.28881 -33.94298 -32.46207 -32.32950 -30.34411 -29.41668 -27.55086 -26.28040 -25.63844 -25.24956 -23.62987 -20.89881 -20.23413 -19.81944 -18.05912 -18.00323 -17.64860 -16.84279 -16.30836 -15.91445 -15.69076 -15.45883 -15.11024 -14.83286 -14.60946 -14.46694 -14.03854 -13.95078 -13.71796 -13.57892 -13.28621 -13.21675 -13.19881 -12.96586 -12.74833 -12.60501 -12.47478 -12.31043 -12.18433 -12.08883 -11.73802 -11.41296 -11.15771 -11.10616 -11.08951 -11.05504 -10.78947 -10.42226 -9.84855 -9.48793 -9.27590 -9.10201 -8.95729 -8.27114 -6.53432 -6.24698 -3.95553 1.87242 1.92523 2.30838 2.59225 2.98404 3.04616 3.19900 3.23385 3.25451 3.28823 3.59910 3.76462 3.94053 4.14545 4.17428 4.18488 4.24923 4.34255 4.55796 4.64413 4.69391 4.85959 4.94441 5.00674 5.09751 5.10598 5.19672 5.23997 5.30806 5.35536 5.39582 5.45063 5.51388 5.54431 5.63779 5.70387 5.80481 5.84593 5.89818 6.08936 6.52606 6.84330 7.06643 7.47640 7.56343 7.62828 8.31972 8.55477 9.20701 10.82663 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034963 B = 0.001740 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.655776 B =16086.791198 C =16358.133370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.007 4.007 3 H 0.140 0.860 4 C 0.220 3.780 5 N -0.409 5.409 6 C 0.543 3.457 7 O -0.526 6.526 8 N -0.614 5.614 9 C 0.095 3.905 10 C -0.130 4.130 11 C -0.087 4.087 12 C -0.136 4.136 13 C 0.137 3.863 14 N -0.736 5.736 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.118 3.882 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.083 0.917 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 0.032 26.438 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 H 0.158 0.842 4 C -0.100 4.100 5 N -0.084 5.084 6 C 0.329 3.671 7 O -0.401 6.401 8 N -0.348 5.348 9 C -0.027 4.027 10 C -0.168 4.168 11 C -0.088 4.088 12 C -0.194 4.194 13 C 0.012 3.988 14 N -0.392 5.392 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.004 4.004 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.851 -3.200 26.888 27.350 hybrid contribution 0.345 3.028 -0.028 3.048 sum -3.506 -0.172 26.860 27.089 Atomic orbital electron populations 1.21949 0.89462 1.04611 1.04862 1.18755 0.98964 1.00069 0.85331 0.84238 1.28037 0.93912 0.94038 0.93994 1.81214 1.07526 1.07624 1.11995 1.19573 0.80341 0.84475 0.82703 1.90820 1.37588 1.26008 1.85689 1.48640 1.51406 1.29812 1.04981 1.22339 0.95168 0.87602 0.97637 1.22702 0.99145 0.99507 0.95446 1.21913 0.96561 0.95744 0.94579 1.21792 0.94518 1.01410 1.01657 1.21175 1.02465 0.87748 0.87375 1.45952 1.76014 1.10629 1.06568 1.20301 0.75576 0.90860 0.81475 1.90714 1.46350 1.31730 1.70237 1.23527 1.04834 0.97721 1.04329 1.85421 1.94026 1.13669 0.90236 1.22861 1.57058 0.93962 0.94583 0.90927 1.24991 0.94557 0.98024 0.95982 1.70018 1.45797 1.29991 1.04428 0.86172 0.78368 0.82476 0.78503 1.20274 1.20743 1.19708 1.22546 1.01840 0.95060 0.80973 0.90925 0.90081 0.89373 0.90168 0.90399 0.89357 0.89795 0.92339 0.91868 0.91856 0.91126 0.91120 0.76845 0.89246 0.89274 0.92160 0.89918 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.26 8.97 37.16 0.33 0.07 16 2 C -0.01 -0.03 2.48 -94.56 -0.23 -0.26 16 3 H 0.14 0.10 7.91 -51.93 -0.41 -0.31 16 4 C 0.22 1.85 13.88 -20.76 -0.29 1.56 16 5 N -0.41 -4.76 18.54 42.15 0.78 -3.98 16 6 C 0.54 3.94 7.24 -10.98 -0.08 3.86 16 7 O -0.53 -6.45 16.26 5.56 0.09 -6.36 16 8 N -0.61 -3.21 3.24 -169.54 -0.55 -3.76 16 9 C 0.10 0.21 5.19 -2.98 -0.02 0.20 16 10 C -0.13 -0.46 5.52 -25.36 -0.14 -0.60 16 11 C -0.09 -0.49 0.64 -152.63 -0.10 -0.58 16 12 C -0.14 -0.81 8.31 37.16 0.31 -0.50 16 13 C 0.14 1.23 4.50 -4.04 -0.02 1.21 16 14 N -0.74 -7.96 5.10 -60.30 -0.31 -8.26 16 15 C 0.53 8.95 7.85 -10.99 -0.09 8.87 16 16 O -0.52 -10.98 15.86 5.56 0.09 -10.89 16 17 C -0.15 -2.87 6.16 36.01 0.22 -2.65 16 18 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 19 C -0.54 -14.84 9.50 30.94 0.29 -14.55 16 20 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 22 N -0.87 -25.64 13.22 55.49 0.73 -24.91 16 23 Si 0.92 20.87 29.55 -169.99 -5.02 15.85 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 C 0.12 0.73 5.99 -1.98 -0.01 0.72 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.09 0.00 5.12 -51.93 -0.27 -0.26 16 31 H 0.08 0.01 7.38 -51.93 -0.38 -0.38 16 32 H 0.08 0.09 7.20 -51.93 -0.37 -0.28 16 33 H 0.09 0.36 7.85 -51.93 -0.41 -0.05 16 34 H 0.08 0.22 7.86 -51.93 -0.41 -0.19 16 35 H 0.06 0.33 8.11 -51.93 -0.42 -0.09 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.35 7.11 -51.93 -0.37 -0.02 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 40 H 0.40 3.16 7.18 -40.82 -0.29 2.87 16 41 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 42 H 0.09 1.54 8.14 -51.92 -0.42 1.11 16 43 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.08 0.48 8.04 -51.93 -0.42 0.06 16 45 H 0.09 0.71 7.79 -51.93 -0.40 0.31 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -38.70 390.02 -7.09 -45.78 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -6.66 Total: -4.87 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 0.09 Total: -0.69 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.66 Total: -40.91 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.18 Total: -17.25 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.70 -7.09 -45.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739872078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.379 kcal (2) G-P(sol) polarization free energy of solvation -38.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds