Wall clock time and date at job start Sat Apr 11 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47238 * 2 1 4 4 C 1.47195 * 109.47254 * 120.00062 * 2 1 3 5 5 N 2.60801 * 109.47239 * 119.99982 * 2 1 3 6 6 C 1.50704 * 109.47276 * 239.99865 * 2 1 3 7 7 O 1.21275 * 120.00253 * 239.99923 * 6 2 1 8 8 N 1.34784 * 119.99618 * 59.72630 * 6 2 1 9 9 C 1.46500 * 119.99668 * 180.27344 * 8 6 2 10 10 C 1.53003 * 109.47042 * 179.97438 * 9 8 6 11 11 C 1.52993 * 109.46945 * 180.02562 * 10 9 8 12 12 N 1.46504 * 109.46982 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99861 * 270.00189 * 12 11 10 14 14 O 1.21275 * 120.00204 * 5.04040 * 13 12 11 15 15 C 1.50708 * 119.99523 * 185.04445 * 13 12 11 16 16 S 1.81004 * 109.46483 * 185.01380 * 15 13 12 17 17 C 1.76206 * 99.99635 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00117 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00138 * 180.02562 * 17 16 15 20 20 N 1.31633 * 119.99762 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00242 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47304 * 89.99673 * 21 19 17 23 23 H 1.48500 * 109.47341 * 210.00044 * 21 19 17 24 24 H 1.48501 * 109.46992 * 329.99775 * 21 19 17 25 25 C 1.46500 * 120.00218 * 89.99891 * 12 11 10 26 26 C 1.53007 * 117.49554 * 2.75725 * 25 12 11 27 27 C 1.53003 * 60.00112 * 252.51184 * 26 25 12 28 28 H 1.09001 * 109.47073 * 299.99933 * 1 2 3 29 29 H 1.09011 * 109.47208 * 59.99950 * 1 2 3 30 30 H 1.08998 * 109.47238 * 180.02562 * 1 2 3 31 31 H 0.97002 * 120.00278 * 0.27724 * 8 6 2 32 32 H 1.09001 * 109.47366 * 300.00152 * 9 8 6 33 33 H 1.09000 * 109.46775 * 60.00279 * 9 8 6 34 34 H 1.09001 * 109.46788 * 300.00629 * 10 9 8 35 35 H 1.08992 * 109.46782 * 59.99917 * 10 9 8 36 36 H 1.08996 * 109.47462 * 299.99366 * 11 10 9 37 37 H 1.09000 * 109.47574 * 60.00431 * 11 10 9 38 38 H 1.08999 * 109.46848 * 305.00709 * 15 13 12 39 39 H 1.08993 * 109.47078 * 65.01704 * 15 13 12 40 40 H 0.97004 * 120.00006 * 180.02562 * 20 19 17 41 41 H 1.08996 * 115.55552 * 148.46358 * 25 12 11 42 42 H 1.09002 * 117.49634 * 359.97438 * 26 25 12 43 43 H 1.08996 * 117.49936 * 145.02770 * 26 25 12 44 44 H 1.09002 * 117.49778 * 252.51583 * 27 26 25 45 45 H 1.08993 * 117.51923 * 107.47871 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6939 1.2018 5 7 2.3993 -1.2294 2.1294 6 6 2.0323 -0.7104 -1.2305 7 8 2.7296 -1.6965 -1.1192 8 7 1.7021 -0.2532 -2.4546 9 6 2.1856 -0.9473 -3.6507 10 6 1.6705 -0.2296 -4.9000 11 6 2.1748 -0.9549 -6.1491 12 7 1.6811 -0.2681 -7.3453 13 6 0.5010 -0.6260 -7.8891 14 8 -0.1951 -1.4520 -7.3378 15 6 0.0464 0.0003 -9.1823 16 16 -1.6265 -0.5697 -9.5732 17 6 -1.8978 0.2927 -11.0857 18 1 -1.1284 0.9363 -11.4858 19 6 -3.1003 0.1447 -11.7629 20 7 -4.0378 -0.6403 -11.2755 21 14 -3.3882 1.0594 -13.3660 22 1 -2.9302 0.2214 -14.5032 23 1 -4.8366 1.3499 -13.5169 24 1 -2.6265 2.3341 -13.3522 25 6 2.4702 0.8078 -7.9504 26 6 3.8304 1.1238 -7.3251 27 6 2.6587 2.0894 -7.1363 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.1445 0.5355 -2.5436 32 1 3.2755 -0.9478 -3.6550 33 1 1.8217 -1.9748 -3.6465 34 1 0.5805 -0.2295 -4.8954 35 1 2.0339 0.7979 -4.9044 36 1 3.2648 -0.9553 -6.1539 37 1 1.8110 -1.9824 -6.1445 38 1 0.0458 1.0855 -9.0798 39 1 0.7254 -0.2887 -9.9843 40 1 -4.8781 -0.7440 -11.7489 41 1 2.3778 0.9075 -9.0319 42 1 4.1379 0.5316 -6.4632 43 1 4.6331 1.4316 -7.9951 44 1 2.6905 3.0323 -7.6822 45 1 2.1952 2.1323 -6.1507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001744049812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:35 Heat of formation + Delta-G solvation = -20.457892 kcal Electronic energy + Delta-G solvation = -25932.853662 eV Core-core repulsion = 22077.809626 eV Total energy + Delta-G solvation = -3855.044035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.52601 -39.96694 -37.43664 -37.05672 -35.91872 -34.16659 -33.38230 -32.46290 -31.66446 -29.19235 -26.28936 -25.57918 -25.20138 -23.04425 -22.53073 -21.84387 -21.43139 -19.19188 -18.51798 -17.98058 -17.67325 -16.90999 -16.50168 -16.24599 -15.60695 -15.28203 -15.10038 -14.83731 -14.76373 -14.46000 -14.14865 -14.03406 -13.69780 -13.54493 -13.19007 -13.06423 -12.81997 -12.72517 -12.66694 -12.48170 -12.32091 -12.02030 -11.94358 -11.84911 -11.71064 -11.18203 -11.09471 -11.05974 -10.89858 -10.81503 -10.75241 -10.35287 -9.84466 -9.54307 -9.45466 -9.10006 -8.52897 -8.27636 -6.54201 -6.25250 -3.96068 2.01940 2.06223 2.39271 2.69724 2.89065 2.92960 3.19476 3.21391 3.27037 3.33170 3.51274 3.64097 4.13255 4.16734 4.27100 4.42134 4.43207 4.54429 4.63711 4.67888 4.74403 4.89548 4.93399 4.97580 5.08679 5.10130 5.14434 5.27840 5.40147 5.46815 5.48186 5.53574 5.58015 5.74519 5.81161 5.84530 5.87912 5.89662 6.00085 6.09494 6.52334 6.90556 7.15200 7.42778 7.56113 7.65821 8.31546 8.44690 9.20205 10.82121 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016403 B = 0.002021 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.597248 B =13848.544690 C =14857.269690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.011 4.011 3 H 0.142 0.858 4 C 0.221 3.779 5 N -0.411 5.411 6 C 0.522 3.478 7 O -0.527 6.527 8 N -0.720 5.720 9 C 0.122 3.878 10 C -0.152 4.152 11 C 0.118 3.882 12 N -0.593 5.593 13 C 0.539 3.461 14 O -0.510 6.510 15 C -0.150 4.150 16 S -0.062 6.062 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.077 3.923 26 C -0.186 4.186 27 C -0.195 4.195 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.405 0.595 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.132 0.868 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.285 8.448 15.388 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.035 4.035 3 H 0.159 0.841 4 C -0.099 4.099 5 N -0.086 5.086 6 C 0.305 3.695 7 O -0.403 6.403 8 N -0.372 5.372 9 C -0.002 4.002 10 C -0.191 4.191 11 C -0.006 4.006 12 N -0.327 5.327 13 C 0.328 3.672 14 O -0.383 6.383 15 C -0.301 4.301 16 S 0.164 5.836 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.029 4.029 26 C -0.224 4.224 27 C -0.233 4.233 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.240 0.760 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.149 0.851 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.094 5.636 17.687 23.308 hybrid contribution 0.323 2.196 -2.193 3.120 sum 14.418 7.832 15.494 22.567 Atomic orbital electron populations 1.21833 0.89312 1.04635 1.04650 1.18843 0.98968 1.00169 0.85559 0.84107 1.28075 0.93839 0.93982 0.93995 1.81209 1.07669 1.07703 1.12054 1.19981 0.80617 0.84706 0.84193 1.90806 1.37257 1.25687 1.86529 1.45864 1.53766 1.32318 1.05279 1.21342 0.99410 0.96858 0.82561 1.22312 1.03170 1.00130 0.93504 1.21288 0.98998 0.97285 0.83032 1.47418 1.20759 1.36196 1.28320 1.20315 0.79457 0.81553 0.85910 1.90709 1.52510 1.32695 1.62431 1.23556 1.06460 1.03731 0.96318 1.85381 1.06769 1.61970 1.29437 1.22845 1.04326 1.32486 1.08641 0.90939 1.24989 0.94960 0.95373 0.98239 1.70016 1.05939 1.35593 1.38689 0.86176 0.77624 0.79686 0.82062 1.20264 1.20748 1.19698 1.21750 0.94958 0.89226 0.96930 1.23333 0.91826 1.03444 1.03780 1.23500 1.02172 0.94975 1.02672 0.90100 0.89650 0.90820 0.76010 0.91089 0.90686 0.90011 0.90876 0.90159 0.89307 0.89255 0.89170 0.92170 0.85063 0.88126 0.87875 0.88032 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 9.04 37.15 0.34 -0.08 16 2 C -0.01 -0.05 3.10 -94.56 -0.29 -0.34 16 3 H 0.14 0.11 8.14 -51.93 -0.42 -0.31 16 4 C 0.22 2.00 13.88 -20.76 -0.29 1.71 16 5 N -0.41 -5.06 18.54 42.16 0.78 -4.28 16 6 C 0.52 4.03 7.14 -10.98 -0.08 3.95 16 7 O -0.53 -6.75 16.03 5.56 0.09 -6.66 16 8 N -0.72 -4.10 5.44 -60.29 -0.33 -4.43 16 9 C 0.12 0.89 5.67 -4.04 -0.02 0.87 16 10 C -0.15 -1.19 5.61 -26.73 -0.15 -1.34 16 11 C 0.12 1.15 4.91 -4.04 -0.02 1.13 16 12 N -0.59 -7.29 2.80 -166.10 -0.47 -7.75 16 13 C 0.54 9.38 7.67 -10.98 -0.08 9.30 16 14 O -0.51 -10.72 15.50 5.56 0.09 -10.63 16 15 C -0.15 -2.87 4.68 36.01 0.17 -2.70 16 16 S -0.06 -1.63 20.58 -107.50 -2.21 -3.84 16 17 C -0.53 -14.77 9.50 30.94 0.29 -14.48 16 18 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 19 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 20 N -0.87 -25.56 13.22 55.49 0.73 -24.83 16 21 Si 0.92 20.86 29.55 -169.99 -5.02 15.83 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 C 0.08 0.74 5.79 -67.92 -0.39 0.35 16 26 C -0.19 -1.27 9.74 -26.73 -0.26 -1.53 16 27 C -0.19 -1.48 10.19 -26.73 -0.27 -1.76 16 28 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.08 0.09 7.56 -51.92 -0.39 -0.31 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.40 1.13 7.88 -40.82 -0.32 0.81 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.47 5.90 -51.93 -0.31 0.16 16 36 H 0.08 0.60 6.00 -51.93 -0.31 0.29 16 37 H 0.09 1.04 7.50 -51.93 -0.39 0.65 16 38 H 0.09 1.58 7.87 -51.92 -0.41 1.17 16 39 H 0.09 1.62 7.96 -51.92 -0.41 1.20 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.13 1.28 7.13 -51.93 -0.37 0.91 16 42 H 0.10 0.62 6.11 -51.93 -0.32 0.30 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.10 0.73 6.12 -51.93 -0.32 0.41 16 LS Contribution 396.67 15.07 5.98 5.98 Total: -1.00 -38.25 396.67 -8.00 -46.25 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -6.47 Total: -2.67 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -1.16 Total: -2.97 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.72 Total: -41.29 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.18 Total: -17.29 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.25 -8.00 -46.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744049812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.790 kcal (2) G-P(sol) polarization free energy of solvation -38.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds