Wall clock time and date at job start Sat Apr 11 2020 05:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35740 * 116.99735 * 2 1 4 4 C 1.39284 * 120.84615 * 0.02562 * 3 2 1 5 5 C 1.37955 * 119.08943 * 179.97438 * 4 3 2 6 6 N 1.31977 * 120.82475 * 0.02562 * 5 4 3 7 7 C 1.31953 * 121.86268 * 359.65946 * 6 5 4 8 8 C 1.50699 * 119.59147 * 180.31157 * 7 6 5 9 9 N 1.46895 * 109.47201 * 275.31559 * 8 7 6 10 10 C 1.46904 * 111.00013 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47089 * 34.99750 * 10 9 8 12 12 C 1.53002 * 109.46979 * 274.99986 * 10 9 8 13 13 C 1.52996 * 109.47407 * 154.99760 * 10 9 8 14 14 N 1.46499 * 109.47042 * 305.00265 * 13 10 9 15 15 C 1.34776 * 119.99925 * 180.02562 * 14 13 10 16 16 O 1.21281 * 120.00141 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.99966 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.47041 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99823 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99987 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99451 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00165 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47087 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46922 * 119.99971 * 23 21 19 26 26 H 1.48495 * 109.47421 * 240.00443 * 23 21 19 27 27 C 1.37993 * 120.82106 * 0.63269 * 7 6 5 28 28 H 1.08999 * 109.47490 * 59.99898 * 1 2 3 29 29 H 1.08998 * 109.47310 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47354 * 299.99731 * 1 2 3 31 31 H 1.07997 * 120.45628 * 359.95654 * 4 3 2 32 32 H 1.07994 * 119.58624 * 180.02562 * 5 4 3 33 33 H 1.09008 * 109.46924 * 35.31738 * 8 7 6 34 34 H 1.08996 * 109.47290 * 155.30915 * 8 7 6 35 35 H 1.00901 * 110.99670 * 303.94827 * 9 8 7 36 36 H 1.09004 * 109.47018 * 299.99808 * 12 10 9 37 37 H 1.08996 * 109.46921 * 59.99944 * 12 10 9 38 38 H 1.09001 * 109.46771 * 179.97438 * 12 10 9 39 39 H 1.09003 * 109.47214 * 64.99829 * 13 10 9 40 40 H 1.08999 * 109.47089 * 184.99876 * 13 10 9 41 41 H 0.96997 * 120.00400 * 359.97438 * 14 13 10 42 42 H 1.08996 * 109.47031 * 299.99332 * 17 15 14 43 43 H 1.09005 * 109.46995 * 59.99719 * 17 15 14 44 44 H 0.97012 * 119.99327 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.45799 * 179.68491 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0005 7 6 4.0230 2.5510 0.0062 8 6 5.5257 2.6651 0.0124 9 7 6.0102 2.8270 -1.3649 10 6 7.4743 2.9424 -1.3978 11 1 7.9060 2.3116 -0.6207 12 6 7.8767 4.3984 -1.1548 13 6 7.9908 2.4920 -2.7656 14 7 7.5049 1.1395 -3.0500 15 6 7.8366 0.5337 -4.2073 16 8 8.5370 1.1083 -5.0136 17 6 7.3372 -0.8578 -4.4996 18 16 7.9481 -1.3906 -6.1179 19 6 7.2350 -2.9998 -6.1995 20 1 6.6288 -3.3639 -5.3832 21 6 7.4515 -3.7992 -7.3134 22 7 8.1899 -3.3552 -8.3085 23 14 6.6961 -5.5054 -7.3996 24 1 5.9164 -5.7647 -6.1626 25 1 5.7964 -5.5894 -8.5780 26 1 7.7744 -6.5184 -7.5269 27 6 3.4346 1.3029 -0.0002 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2244 2.3566 0.0003 32 1 1.4007 4.5173 0.0019 33 1 5.8219 3.5302 0.6059 34 1 5.9568 1.7626 0.4456 35 1 5.6936 2.0691 -1.9509 36 1 7.4450 5.0292 -1.9319 37 1 7.5088 4.7192 -0.1802 38 1 8.9631 4.4838 -1.1787 39 1 7.6303 3.1764 -3.5336 40 1 9.0808 2.4929 -2.7608 41 1 6.9450 0.6797 -2.4050 42 1 7.6977 -1.5420 -3.7315 43 1 6.2471 -0.8590 -4.5046 44 1 8.3415 -3.9140 -9.0869 45 1 4.0432 0.4106 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752862076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:38 Heat of formation + Delta-G solvation = -37.197201 kcal Electronic energy + Delta-G solvation = -25923.472432 eV Core-core repulsion = 22067.702525 eV Total energy + Delta-G solvation = -3855.769906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.02210 -39.45160 -38.77334 -37.41312 -34.20349 -32.58962 -32.42519 -31.87239 -30.39943 -29.31807 -28.06171 -26.28819 -25.54690 -25.09049 -23.83602 -21.88121 -20.87840 -20.41252 -18.51904 -17.89464 -17.47698 -16.55654 -16.36410 -16.19195 -16.13628 -16.02849 -15.37410 -15.13018 -14.86879 -14.80522 -14.44150 -14.10220 -13.90512 -13.76237 -13.28713 -13.00492 -12.93686 -12.86288 -12.62090 -12.44249 -12.10906 -12.02583 -11.91939 -11.70231 -11.53080 -11.12173 -11.07147 -11.01710 -10.75222 -9.82237 -9.80708 -9.50795 -9.42145 -9.25045 -9.07908 -8.92405 -8.76725 -8.23045 -6.49742 -6.21754 -3.92071 0.67359 0.99892 2.66139 3.01166 3.08766 3.21447 3.27448 3.30974 3.34032 3.69196 3.84498 4.04332 4.20244 4.23412 4.46079 4.52268 4.60870 4.66144 4.73062 4.79944 4.94532 4.98852 5.05688 5.10217 5.13524 5.14673 5.21458 5.36446 5.52131 5.53631 5.58743 5.62888 5.68304 5.70894 5.87479 5.90028 6.07295 6.12682 6.13157 6.54927 6.64839 6.76261 7.01120 7.59703 7.62896 7.72619 8.35467 8.58982 9.23722 10.85733 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008714 B = 0.002633 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3212.281757 B =10631.658504 C =13490.452044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.170 3.830 4 C -0.264 4.264 5 C 0.138 3.862 6 N -0.487 5.487 7 C 0.166 3.834 8 C 0.109 3.891 9 N -0.676 5.676 10 C 0.076 3.924 11 H 0.053 0.947 12 C -0.137 4.137 13 C 0.118 3.882 14 N -0.743 5.743 15 C 0.533 3.467 16 O -0.514 6.514 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.201 4.201 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.138 0.862 32 H 0.159 0.841 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.345 0.655 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.392 0.608 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.371 12.509 22.874 29.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.116 3.884 4 C -0.285 4.285 5 C -0.019 4.019 6 N -0.199 5.199 7 C 0.029 3.971 8 C -0.020 4.020 9 N -0.311 5.311 10 C -0.034 4.034 11 H 0.071 0.929 12 C -0.196 4.196 13 C -0.006 4.006 14 N -0.398 5.398 15 C 0.319 3.681 16 O -0.387 6.387 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.222 4.222 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.076 0.924 31 H 0.156 0.844 32 H 0.176 0.824 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.165 0.835 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.226 0.774 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.720 14.691 21.321 28.422 hybrid contribution -2.224 -3.670 1.339 4.495 sum -13.944 11.022 22.661 28.800 Atomic orbital electron populations 1.23161 0.77570 1.04588 1.01658 1.86097 1.22065 1.26239 1.87642 1.19310 0.92385 0.84679 0.92014 1.22250 1.01596 0.93359 1.11296 1.22586 0.90117 0.96981 0.92224 1.67553 1.06648 1.31726 1.13991 1.20893 0.96129 0.87302 0.92775 1.20860 0.87917 1.01912 0.91343 1.60427 1.10130 1.51543 1.09000 1.21804 0.87052 0.98178 0.96361 0.92927 1.21729 1.00720 0.94579 1.02545 1.21527 0.99558 0.83646 0.95896 1.46049 1.55327 1.17284 1.21180 1.20287 0.79742 0.87541 0.80504 1.90710 1.36241 1.65777 1.46020 1.23539 1.04450 0.95139 1.07349 1.85411 1.67322 1.17908 1.12633 1.22907 1.37096 1.01016 1.07281 0.90898 1.24998 0.95072 0.98890 0.94673 1.70035 1.36217 1.37076 1.06934 0.86114 0.78857 0.82294 0.78212 1.19627 1.20565 1.20564 1.21349 0.92244 0.99757 1.08839 0.92167 0.87699 0.92358 0.84380 0.82409 0.88647 0.93173 0.83498 0.91416 0.92242 0.92095 0.90519 0.90722 0.77405 0.89274 0.89233 0.92237 0.84110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.84 101.05 0.99 1.12 16 2 O -0.31 -2.82 10.51 -18.93 -0.20 -3.02 16 3 C 0.17 1.60 6.74 -38.82 -0.26 1.34 16 4 C -0.26 -2.07 9.11 -39.30 -0.36 -2.43 16 5 C 0.14 1.17 11.17 -17.59 -0.20 0.98 16 6 N -0.49 -5.16 10.27 -9.55 -0.10 -5.25 16 7 C 0.17 1.62 6.29 -82.63 -0.52 1.10 16 8 C 0.11 0.90 5.79 -4.98 -0.03 0.87 16 9 N -0.68 -6.34 6.29 -107.99 -0.68 -7.02 16 10 C 0.08 0.66 2.81 -67.71 -0.19 0.47 16 11 H 0.05 0.41 7.80 -51.93 -0.41 0.01 16 12 C -0.14 -1.10 9.41 37.16 0.35 -0.75 16 13 C 0.12 1.38 5.31 -4.04 -0.02 1.35 16 14 N -0.74 -9.78 4.99 -60.29 -0.30 -10.08 16 15 C 0.53 9.95 7.85 -10.98 -0.09 9.87 16 16 O -0.51 -11.75 15.86 5.56 0.09 -11.66 16 17 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 19 C -0.53 -15.28 9.50 30.94 0.29 -14.99 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 23 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 C -0.20 -1.90 9.68 -39.30 -0.38 -2.28 16 28 H 0.06 0.27 7.71 -51.93 -0.40 -0.13 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.22 7.71 -51.93 -0.40 -0.18 16 31 H 0.14 0.72 6.47 -52.49 -0.34 0.38 16 32 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 33 H 0.10 0.78 7.44 -51.92 -0.39 0.39 16 34 H 0.05 0.33 7.95 -51.93 -0.41 -0.08 16 35 H 0.34 3.41 6.71 -39.29 -0.26 3.15 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.44 7.45 -51.93 -0.39 0.06 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.39 4.07 7.37 -40.82 -0.30 3.76 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 44 H 0.27 7.51 8.31 -40.81 -0.34 7.17 16 45 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -36.36 393.57 -8.68 -45.04 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.64 Total: 3.21 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -0.28 Total: -4.25 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.34 Total: -47.87 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.11 Total: -14.68 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.36 -8.68 -45.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752862076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.847 kcal (2) G-P(sol) polarization free energy of solvation -36.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds