Wall clock time and date at job start Sat Apr 11 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35740 * 116.99735 * 2 1 4 4 C 1.39284 * 120.84615 * 0.02562 * 3 2 1 5 5 C 1.37955 * 119.08943 * 179.97438 * 4 3 2 6 6 N 1.31977 * 120.82475 * 0.02562 * 5 4 3 7 7 C 1.31953 * 121.86268 * 359.65946 * 6 5 4 8 8 C 1.50699 * 119.59147 * 180.31157 * 7 6 5 9 9 N 1.46895 * 109.47201 * 275.31559 * 8 7 6 10 10 C 1.46904 * 111.00013 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47089 * 34.99750 * 10 9 8 12 12 C 1.53002 * 109.46979 * 274.99986 * 10 9 8 13 13 C 1.52996 * 109.47407 * 154.99760 * 10 9 8 14 14 N 1.46499 * 109.47042 * 305.00265 * 13 10 9 15 15 C 1.34776 * 119.99925 * 180.02562 * 14 13 10 16 16 O 1.21281 * 120.00141 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.99966 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.47041 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99823 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99987 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99451 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00165 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47087 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46922 * 119.99971 * 23 21 19 26 26 H 1.48495 * 109.47421 * 240.00443 * 23 21 19 27 27 C 1.37993 * 120.82106 * 0.63269 * 7 6 5 28 28 H 1.08999 * 109.47490 * 59.99898 * 1 2 3 29 29 H 1.08998 * 109.47310 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47354 * 299.99731 * 1 2 3 31 31 H 1.07997 * 120.45628 * 359.95654 * 4 3 2 32 32 H 1.07994 * 119.58624 * 180.02562 * 5 4 3 33 33 H 1.09008 * 109.46924 * 35.31738 * 8 7 6 34 34 H 1.08996 * 109.47290 * 155.30915 * 8 7 6 35 35 H 1.00901 * 110.99670 * 303.94827 * 9 8 7 36 36 H 1.09004 * 109.47018 * 299.99808 * 12 10 9 37 37 H 1.08996 * 109.46921 * 59.99944 * 12 10 9 38 38 H 1.09001 * 109.46771 * 179.97438 * 12 10 9 39 39 H 1.09003 * 109.47214 * 64.99829 * 13 10 9 40 40 H 1.08999 * 109.47089 * 184.99876 * 13 10 9 41 41 H 0.96997 * 120.00400 * 359.97438 * 14 13 10 42 42 H 1.08996 * 109.47031 * 299.99332 * 17 15 14 43 43 H 1.09005 * 109.46995 * 59.99719 * 17 15 14 44 44 H 0.97012 * 119.99327 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.45799 * 179.68491 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0005 7 6 4.0230 2.5510 0.0062 8 6 5.5257 2.6651 0.0124 9 7 6.0102 2.8270 -1.3649 10 6 7.4743 2.9424 -1.3978 11 1 7.9060 2.3116 -0.6207 12 6 7.8767 4.3984 -1.1548 13 6 7.9908 2.4920 -2.7656 14 7 7.5049 1.1395 -3.0500 15 6 7.8366 0.5337 -4.2073 16 8 8.5370 1.1083 -5.0136 17 6 7.3372 -0.8578 -4.4996 18 16 7.9481 -1.3906 -6.1179 19 6 7.2350 -2.9998 -6.1995 20 1 6.6288 -3.3639 -5.3832 21 6 7.4515 -3.7992 -7.3134 22 7 8.1899 -3.3552 -8.3085 23 14 6.6961 -5.5054 -7.3996 24 1 5.9164 -5.7647 -6.1626 25 1 5.7964 -5.5894 -8.5780 26 1 7.7744 -6.5184 -7.5269 27 6 3.4346 1.3029 -0.0002 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2244 2.3566 0.0003 32 1 1.4007 4.5173 0.0019 33 1 5.8219 3.5302 0.6059 34 1 5.9568 1.7626 0.4456 35 1 5.6936 2.0691 -1.9509 36 1 7.4450 5.0292 -1.9319 37 1 7.5088 4.7192 -0.1802 38 1 8.9631 4.4838 -1.1787 39 1 7.6303 3.1764 -3.5336 40 1 9.0808 2.4929 -2.7608 41 1 6.9450 0.6797 -2.4050 42 1 7.6977 -1.5420 -3.7315 43 1 6.2471 -0.8590 -4.5046 44 1 8.3415 -3.9140 -9.0869 45 1 4.0432 0.4106 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752862076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:37 Heat of formation + Delta-G solvation = -64.903682 kcal Electronic energy + Delta-G solvation = -25924.673875 eV Core-core repulsion = 22067.702525 eV Total energy + Delta-G solvation = -3856.971349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.63869 -40.76893 -39.44167 -38.33710 -35.28913 -34.58698 -33.45529 -32.49935 -31.32907 -30.57424 -28.53110 -27.74905 -27.02682 -26.00358 -24.46353 -22.51156 -21.83319 -21.65878 -19.88437 -19.07438 -18.19767 -17.83644 -17.44143 -17.12794 -16.88565 -16.81281 -16.69764 -16.30560 -16.00104 -15.93790 -15.78123 -15.03045 -14.79574 -14.58719 -14.49428 -14.40874 -14.04482 -13.68405 -13.56582 -13.28102 -13.16436 -13.01548 -12.91377 -12.83871 -12.59207 -12.54033 -12.46273 -12.12530 -11.88545 -11.69700 -11.16218 -10.99322 -10.48896 -10.27888 -10.19114 -10.12713 -9.88264 -9.44419 -8.67136 -8.35184 -6.13139 0.04519 0.34395 1.26195 1.41194 1.46457 1.57692 1.58803 2.14271 2.22413 2.27536 2.66892 2.99111 3.19810 3.30882 3.38785 3.67482 3.70550 3.89457 3.95118 4.10789 4.14806 4.22607 4.28265 4.31008 4.33379 4.37389 4.46207 4.49112 4.59078 4.65377 4.70427 4.76740 4.84900 4.93173 4.97721 5.05774 5.07770 5.31811 5.41823 5.46708 5.52789 5.96572 6.19713 6.20260 6.26609 6.40373 7.06280 7.08352 7.19151 8.74323 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008714 B = 0.002633 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3212.281757 B =10631.658504 C =13490.452044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.329 6.329 3 C 0.155 3.845 4 C -0.260 4.260 5 C 0.128 3.872 6 N -0.514 5.514 7 C 0.155 3.845 8 C 0.112 3.888 9 N -0.687 5.687 10 C 0.087 3.913 11 H 0.072 0.928 12 C -0.135 4.135 13 C 0.119 3.881 14 N -0.715 5.715 15 C 0.536 3.464 16 O -0.563 6.563 17 C -0.130 4.130 18 S -0.151 6.151 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.213 4.213 28 H 0.066 0.934 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.164 0.836 32 H 0.182 0.818 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.340 0.660 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.410 0.590 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.271 0.729 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.110 11.804 25.161 31.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.101 3.899 4 C -0.281 4.281 5 C -0.029 4.029 6 N -0.227 5.227 7 C 0.018 3.982 8 C -0.016 4.016 9 N -0.321 5.321 10 C -0.022 4.022 11 H 0.090 0.910 12 C -0.193 4.193 13 C -0.005 4.005 14 N -0.370 5.370 15 C 0.321 3.679 16 O -0.440 6.440 17 C -0.282 4.282 18 S 0.077 5.923 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.180 1.180 25 H -0.200 1.200 26 H -0.199 1.199 27 C -0.235 4.235 28 H 0.085 0.915 29 H 0.136 0.864 30 H 0.091 0.909 31 H 0.181 0.819 32 H 0.199 0.801 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.160 0.840 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.247 0.753 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.491 14.001 23.675 30.635 hybrid contribution -1.764 -3.351 0.734 3.858 sum -15.255 10.650 24.409 30.691 Atomic orbital electron populations 1.23432 0.75765 1.05914 1.02716 1.86068 1.24055 1.26323 1.87651 1.19554 0.92732 0.85346 0.92273 1.22509 1.02871 0.92593 1.10102 1.23051 0.89821 0.98292 0.91717 1.67564 1.07763 1.32383 1.14978 1.21089 0.96761 0.87300 0.93012 1.20886 0.87283 1.02857 0.90619 1.60427 1.10313 1.51582 1.09812 1.21737 0.86859 0.98906 0.94697 0.90970 1.21716 1.01379 0.93683 1.02527 1.21635 0.99557 0.82037 0.97269 1.45755 1.54074 1.17628 1.19518 1.20039 0.79382 0.86981 0.81458 1.90700 1.38690 1.66657 1.48002 1.23378 1.05244 0.96477 1.03058 1.85593 1.68880 1.19032 1.18843 1.23231 1.37130 1.01082 1.07842 0.89930 1.26139 0.95366 1.03657 0.94063 1.70197 1.37808 1.39018 1.07766 0.84896 0.78027 0.76165 0.78801 1.18013 1.19950 1.19895 1.21519 0.92772 0.99996 1.09176 0.91488 0.86380 0.90861 0.81874 0.80084 0.88574 0.91240 0.84000 0.92768 0.91292 0.91051 0.92187 0.90829 0.75305 0.87099 0.87348 0.91991 0.83414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.84 113.37 1.12 1.25 16 2 O -0.33 -5.57 10.51 -90.65 -0.95 -6.52 16 3 C 0.15 2.72 6.74 22.76 0.15 2.87 16 4 C -0.26 -3.64 9.11 22.45 0.20 -3.43 16 5 C 0.13 1.99 11.17 84.60 0.95 2.93 16 6 N -0.51 -10.34 10.27 -184.12 -1.89 -12.24 16 7 C 0.16 2.85 6.29 42.48 0.27 3.12 16 8 C 0.11 1.65 5.79 85.56 0.50 2.14 16 9 N -0.69 -11.71 6.29 -495.57 -3.12 -14.83 16 10 C 0.09 1.35 2.81 44.91 0.13 1.48 16 11 H 0.07 0.89 7.80 -2.38 -0.02 0.87 16 12 C -0.13 -1.94 9.41 71.98 0.68 -1.26 16 13 C 0.12 2.64 5.31 86.38 0.46 3.10 16 14 N -0.71 -17.74 4.99 -463.06 -2.31 -20.05 16 15 C 0.54 19.75 7.85 87.66 0.69 20.43 16 16 O -0.56 -26.27 15.86 -3.03 -0.05 -26.32 16 17 C -0.13 -5.16 6.16 71.24 0.44 -4.72 16 18 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 19 C -0.55 -31.19 9.50 67.96 0.65 -30.55 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.71 5.49 84.86 0.47 1.18 16 22 N -0.91 -56.21 13.22 21.65 0.29 -55.92 16 23 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 24 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 27 C -0.21 -3.81 9.68 22.45 0.22 -3.59 16 28 H 0.07 0.46 7.71 -2.39 -0.02 0.44 16 29 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.38 7.71 -2.39 -0.02 0.36 16 31 H 0.16 1.29 6.47 -2.91 -0.02 1.27 16 32 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 33 H 0.10 1.39 7.44 -2.38 -0.02 1.38 16 34 H 0.07 0.74 7.95 -2.39 -0.02 0.72 16 35 H 0.34 6.16 6.71 -89.69 -0.60 5.56 16 36 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.07 0.88 7.45 -2.39 -0.02 0.87 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.41 7.47 7.37 -92.71 -0.68 6.78 16 42 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 43 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 44 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 45 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -81.17 393.57 -0.54 -81.70 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -0.27 Total: 23.09 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 6.90 Total: -5.05 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -7.03 Total: -103.03 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -1.00 Total: -32.84 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -81.17 -0.54 -81.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752862076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.801 kcal (2) G-P(sol) polarization free energy of solvation -81.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds